Wall clock time and date at job start Tue Mar 31 2020 20:47:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.46901 * 110.99741 * 2 1 4 4 C 1.46894 * 111.00280 * 123.95627 * 2 1 3 5 5 C 1.53004 * 109.47128 * 169.99925 * 4 2 1 6 6 C 1.50697 * 109.47311 * 180.02562 * 5 4 2 7 7 O 1.21281 * 119.99886 * 359.97438 * 6 5 4 8 8 N 1.34774 * 120.00369 * 180.02562 * 6 5 4 9 9 C 1.47154 * 120.68030 * 0.02562 * 8 6 5 10 10 C 1.55316 * 107.98978 * 132.37931 * 9 8 6 11 11 H 1.09000 * 112.23070 * 181.87529 * 10 9 8 12 12 C 1.54548 * 108.40589 * 307.02049 * 10 9 8 13 13 C 1.54261 * 104.93969 * 88.39126 * 12 10 9 14 14 C 1.54541 * 104.93732 * 359.97438 * 13 12 10 15 15 H 1.09008 * 112.20148 * 146.47668 * 14 13 12 16 16 C 1.47151 * 120.68904 * 179.97438 * 8 6 5 17 17 N 1.48730 * 104.32686 * 24.74757 * 14 13 12 18 18 C 1.46904 * 110.99735 * 78.35515 * 17 14 13 19 19 C 1.50706 * 109.46676 * 170.00343 * 18 17 14 20 20 O 1.21288 * 120.00284 * 0.02562 * 19 18 17 21 21 N 1.34777 * 119.99730 * 179.97438 * 19 18 17 22 22 C 1.37095 * 119.99910 * 179.97438 * 21 19 18 23 23 H 1.08005 * 119.99959 * 0.02562 * 22 21 19 24 24 C 1.38950 * 120.00053 * 180.02562 * 22 21 19 25 25 N 1.31413 * 119.99930 * 0.02562 * 24 22 21 26 26 Si 1.86800 * 119.99918 * 180.02562 * 24 22 21 27 27 H 1.48501 * 109.47057 * 179.97438 * 26 24 22 28 28 H 1.48500 * 109.47389 * 300.00155 * 26 24 22 29 29 H 1.48504 * 109.47102 * 60.00503 * 26 24 22 30 30 H 1.08999 * 109.46748 * 296.03759 * 1 2 3 31 31 H 1.08997 * 109.47528 * 56.04299 * 1 2 3 32 32 H 1.09000 * 109.47006 * 176.04690 * 1 2 3 33 33 H 1.09000 * 109.47222 * 183.95676 * 3 2 1 34 34 H 1.08997 * 109.47417 * 303.95936 * 3 2 1 35 35 H 1.09005 * 109.47166 * 63.95930 * 3 2 1 36 36 H 1.09006 * 109.47276 * 50.00228 * 4 2 1 37 37 H 1.08991 * 109.47105 * 289.99889 * 4 2 1 38 38 H 1.08999 * 109.47087 * 60.00189 * 5 4 2 39 39 H 1.09004 * 109.46907 * 300.00125 * 5 4 2 40 40 H 1.09005 * 109.74484 * 252.24861 * 9 8 6 41 41 H 1.09005 * 109.74765 * 12.92414 * 9 8 6 42 42 H 1.09003 * 110.34503 * 207.25498 * 12 10 9 43 43 H 1.09001 * 110.34646 * 329.41768 * 12 10 9 44 44 H 1.08994 * 110.34313 * 241.12912 * 13 12 10 45 45 H 1.08999 * 110.34419 * 118.86514 * 13 12 10 46 46 H 1.08999 * 109.74745 * 107.74171 * 16 8 6 47 47 H 1.09003 * 109.74290 * 347.02545 * 16 8 6 48 48 H 1.08996 * 109.47230 * 50.00891 * 18 17 14 49 49 H 1.09002 * 109.47146 * 290.00123 * 18 17 14 50 50 H 0.96996 * 119.99887 * 0.02562 * 21 19 18 51 51 H 0.97001 * 119.99781 * 359.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.9955 -0.7660 1.1375 5 6 3.5045 -0.9553 0.9702 6 6 4.0446 -1.7417 2.1367 7 8 3.2963 -2.1136 3.0157 8 7 5.3592 -2.0307 2.2039 9 6 6.2809 -1.5855 1.1466 10 6 7.5171 -0.9386 1.8290 11 1 8.2337 -0.5530 1.1039 12 6 7.0202 0.1458 2.8117 13 6 6.7846 -0.6001 4.1412 14 6 7.1590 -2.0700 3.8451 15 1 7.5977 -2.5658 4.7111 16 6 5.9028 -2.7971 3.3364 17 7 8.1093 -1.9849 2.7042 18 6 9.4483 -1.5911 3.1626 19 6 10.4333 -1.7522 2.0334 20 8 10.0569 -2.1549 0.9531 21 7 11.7324 -1.4478 2.2239 22 6 12.6286 -1.5948 1.1969 23 1 12.2935 -1.9542 0.2351 24 6 13.9679 -1.2814 1.3934 25 7 14.3757 -0.8446 2.5638 26 14 15.1889 -1.4811 -0.0062 27 1 16.5423 -1.0824 0.4569 28 1 15.2128 -2.9000 -0.4437 29 1 14.7821 -0.6188 -1.1448 30 1 -0.3633 0.4511 0.9234 31 1 -0.3634 0.5740 -0.8524 32 1 -0.3633 -1.0252 -0.0708 33 1 3.0827 1.3433 -0.0709 34 1 1.5897 1.9164 -0.8523 35 1 1.7044 1.8724 0.9234 36 1 1.5090 -1.7407 1.1755 37 1 1.7976 -0.2248 2.0626 38 1 3.9910 0.0194 0.9322 39 1 3.7024 -1.4965 0.0449 40 1 6.5921 -2.4399 0.5455 41 1 5.7860 -0.8498 0.5124 42 1 7.7792 0.9177 2.9396 43 1 6.0900 0.5857 2.4520 44 1 5.7376 -0.5280 4.4358 45 1 7.4277 -0.1948 4.9224 46 1 6.1668 -3.8023 3.0079 47 1 5.1612 -2.8524 4.1333 48 1 9.7470 -2.2240 3.9983 49 1 9.4307 -0.5496 3.4836 50 1 12.0333 -1.1254 3.0878 51 1 13.7416 -0.7406 3.2904 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001732032933.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:47:17 Heat of formation + Delta-G solvation = -66.593253 kcal Electronic energy + Delta-G solvation = -30646.772604 eV Core-core repulsion = 26580.526875 eV Total energy + Delta-G solvation = -4066.245729 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -42.18431 -40.47377 -39.60642 -38.25755 -36.36712 -35.68329 -33.19232 -33.09141 -32.28307 -31.89235 -29.15428 -28.48748 -27.33401 -26.30427 -25.58385 -25.11924 -22.42173 -21.89266 -21.35272 -21.09039 -19.95313 -19.48131 -18.48022 -18.03242 -17.45080 -17.05291 -16.78166 -16.51597 -16.28209 -15.88174 -15.75655 -15.53792 -15.47901 -15.32192 -15.15118 -14.98005 -14.30892 -14.23943 -14.09980 -13.65789 -13.50988 -13.32242 -13.31882 -13.24434 -12.80001 -12.74471 -12.62204 -12.58831 -12.44782 -12.19484 -12.06799 -11.95840 -11.91515 -11.87751 -11.85202 -11.48285 -11.46204 -10.86060 -10.40240 -10.06887 -9.83268 -9.40087 -9.37307 -8.89141 -6.02796 1.54548 1.55752 1.57074 1.83241 1.89689 2.05095 2.40023 2.66240 2.94702 3.18215 3.21469 3.49991 3.63436 3.77479 3.81705 3.86543 3.92125 4.03610 4.12478 4.19250 4.27837 4.29420 4.30144 4.41817 4.47051 4.47671 4.54008 4.55471 4.63823 4.66152 4.67403 4.73409 4.82340 4.86554 4.88041 4.91170 4.93853 5.00531 5.05790 5.06790 5.17777 5.42569 5.61592 5.80673 5.89201 5.98328 5.99866 6.04314 6.38388 6.61497 6.79327 7.10097 7.48774 7.97940 8.58543 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.019913 B = 0.002339 C = 0.002205 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1405.802780 B =11970.582397 C =12697.215168 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 N -0.558 5.558 3 C 0.016 3.984 4 C 0.078 3.922 5 C -0.130 4.130 6 C 0.518 3.482 7 O -0.583 6.583 8 N -0.601 5.601 9 C 0.129 3.871 10 C 0.054 3.946 11 H 0.084 0.916 12 C -0.139 4.139 13 C -0.137 4.137 14 C 0.050 3.950 15 H 0.119 0.881 16 C 0.129 3.871 17 N -0.499 5.499 18 C 0.050 3.950 19 C 0.449 3.551 20 O -0.606 6.606 21 N -0.591 5.591 22 C -0.404 4.404 23 H 0.074 0.926 24 C -0.045 4.045 25 N -0.919 5.919 26 Si 1.132 2.868 27 H -0.275 1.275 28 H -0.274 1.274 29 H -0.272 1.272 30 H 0.025 0.975 31 H 0.081 0.919 32 H 0.069 0.931 33 H 0.076 0.924 34 H 0.079 0.921 35 H 0.025 0.975 36 H 0.070 0.930 37 H 0.030 0.970 38 H 0.110 0.890 39 H 0.112 0.888 40 H 0.067 0.933 41 H 0.112 0.888 42 H 0.064 0.936 43 H 0.081 0.919 44 H 0.071 0.929 45 H 0.075 0.925 46 H 0.068 0.932 47 H 0.093 0.907 48 H 0.107 0.893 49 H 0.071 0.929 50 H 0.383 0.617 51 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.026 4.698 0.798 23.514 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 N -0.282 5.282 3 C -0.131 4.131 4 C -0.051 4.051 5 C -0.170 4.170 6 C 0.307 3.693 7 O -0.464 6.464 8 N -0.333 5.333 9 C 0.006 3.994 10 C -0.055 4.055 11 H 0.102 0.898 12 C -0.178 4.178 13 C -0.176 4.176 14 C -0.059 4.059 15 H 0.137 0.863 16 C 0.006 3.994 17 N -0.221 5.221 18 C -0.081 4.081 19 C 0.236 3.764 20 O -0.491 6.491 21 N -0.230 5.230 22 C -0.534 4.534 23 H 0.092 0.908 24 C -0.243 4.243 25 N -0.559 5.559 26 Si 0.952 3.048 27 H -0.200 1.200 28 H -0.200 1.200 29 H -0.197 1.197 30 H 0.043 0.957 31 H 0.100 0.900 32 H 0.088 0.912 33 H 0.095 0.905 34 H 0.098 0.902 35 H 0.043 0.957 36 H 0.088 0.912 37 H 0.048 0.952 38 H 0.128 0.872 39 H 0.130 0.870 40 H 0.085 0.915 41 H 0.130 0.870 42 H 0.083 0.917 43 H 0.100 0.900 44 H 0.090 0.910 45 H 0.094 0.906 46 H 0.086 0.914 47 H 0.111 0.889 48 H 0.125 0.875 49 H 0.089 0.911 50 H 0.216 0.784 51 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -21.838 3.639 -0.611 22.148 hybrid contribution -1.415 0.987 2.155 2.760 sum -23.253 4.626 1.543 23.759 Atomic orbital electron populations 1.22419 0.86239 1.02751 1.01026 1.61990 1.08960 1.14705 1.42505 1.22535 1.01515 0.88096 1.00998 1.21694 0.93674 0.98501 0.91191 1.21655 0.96547 1.01779 0.97039 1.20990 0.81193 0.79421 0.87675 1.90664 1.57611 1.55873 1.42249 1.48159 1.07091 1.54226 1.23787 1.22186 0.88521 0.99861 0.88821 1.23627 0.95459 0.90454 0.96002 0.89768 1.22784 1.01779 0.98029 0.95205 1.22765 1.02226 0.95025 0.97552 1.23570 0.92320 0.96422 0.93614 0.86340 1.21718 0.94079 0.94416 0.89220 1.65060 0.99932 1.42843 1.14298 1.21810 0.89381 1.01454 0.95504 1.20712 0.82968 0.82190 0.90484 1.90491 1.78906 1.50924 1.28774 1.42009 1.07461 1.60163 1.13398 1.20474 0.91719 1.46773 0.94386 0.90834 1.27765 0.98257 0.94335 1.03926 1.70975 1.37628 1.44608 1.02702 0.82643 0.73388 0.77564 0.71188 1.19974 1.19955 1.19727 0.95658 0.89995 0.91208 0.90529 0.90223 0.95676 0.91185 0.95208 0.87165 0.86954 0.91461 0.86987 0.91701 0.89991 0.91037 0.90587 0.91413 0.88852 0.87518 0.91144 0.78351 0.93054 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.30 9.57 127.69 1.22 1.52 16 2 N -0.56 -8.62 5.02 -948.86 -4.76 -13.38 16 3 C 0.02 0.20 9.32 127.69 1.19 1.39 16 4 C 0.08 1.39 4.25 86.31 0.37 1.76 16 5 C -0.13 -2.16 4.00 29.85 0.12 -2.04 16 6 C 0.52 11.75 7.70 87.66 0.68 12.42 16 7 O -0.58 -17.07 15.45 -3.03 -0.05 -17.11 16 8 N -0.60 -13.41 2.28 -812.35 -1.85 -15.27 16 9 C 0.13 2.89 5.88 87.05 0.51 3.41 16 10 C 0.05 1.44 3.26 45.89 0.15 1.59 16 11 H 0.08 2.79 7.01 -2.39 -0.02 2.78 16 12 C -0.14 -2.93 5.49 31.55 0.17 -2.76 16 13 C -0.14 -2.72 5.71 31.55 0.18 -2.54 16 14 C 0.05 1.11 3.62 45.36 0.16 1.27 16 15 H 0.12 2.29 7.97 -2.38 -0.02 2.27 16 16 C 0.13 2.96 5.92 86.53 0.51 3.47 16 17 N -0.50 -14.60 4.54 -829.00 -3.76 -18.36 16 18 C 0.05 1.60 5.15 85.56 0.44 2.04 16 19 C 0.45 20.38 7.44 87.66 0.65 21.03 16 20 O -0.61 -32.06 14.93 -3.05 -0.05 -32.11 16 21 N -0.59 -29.20 5.28 -306.98 -1.62 -30.82 16 22 C -0.40 -22.63 9.68 84.04 0.81 -21.82 16 23 H 0.07 4.42 7.16 -2.91 -0.02 4.40 16 24 C -0.04 -2.41 5.50 84.93 0.47 -1.94 16 25 N -0.92 -50.84 13.68 21.66 0.30 -50.54 16 26 Si 1.13 48.01 29.92 68.60 2.05 50.07 16 27 H -0.27 -11.39 7.11 99.48 0.71 -10.68 16 28 H -0.27 -11.10 7.11 99.48 0.71 -10.40 16 29 H -0.27 -10.90 7.11 99.48 0.71 -10.20 16 30 H 0.02 0.32 8.14 -2.39 -0.02 0.30 16 31 H 0.08 0.83 8.12 -2.39 -0.02 0.81 16 32 H 0.07 0.88 8.12 -2.39 -0.02 0.86 16 33 H 0.08 0.85 6.47 -2.39 -0.02 0.83 16 34 H 0.08 0.82 8.12 -2.39 -0.02 0.80 16 35 H 0.02 0.32 8.14 -2.38 -0.02 0.30 16 36 H 0.07 1.41 8.02 -2.38 -0.02 1.40 16 37 H 0.03 0.60 8.08 -2.39 -0.02 0.58 16 38 H 0.11 1.45 6.00 -2.39 -0.01 1.44 16 39 H 0.11 1.70 8.06 -2.38 -0.02 1.68 16 40 H 0.07 1.77 8.14 -2.38 -0.02 1.75 16 41 H 0.11 1.84 6.08 -2.38 -0.01 1.82 16 42 H 0.06 1.41 7.93 -2.39 -0.02 1.39 16 43 H 0.08 1.49 7.88 -2.39 -0.02 1.47 16 44 H 0.07 1.44 7.85 -2.39 -0.02 1.42 16 45 H 0.08 1.38 8.14 -2.39 -0.02 1.37 16 46 H 0.07 1.67 8.14 -2.39 -0.02 1.65 16 47 H 0.09 2.15 7.10 -2.39 -0.02 2.13 16 48 H 0.11 3.03 7.96 -2.39 -0.02 3.01 16 49 H 0.07 2.02 6.98 -2.39 -0.02 2.00 16 50 H 0.38 17.45 6.73 -92.71 -0.62 16.83 16 51 H 0.26 13.80 6.78 -92.71 -0.63 13.17 16 Total: -1.00 -71.86 394.03 -1.66 -73.51 By element: Atomic # 1 Polarization: 34.74 SS G_CDS: 0.45 Total: 35.19 kcal Atomic # 6 Polarization: 11.18 SS G_CDS: 7.64 Total: 18.82 kcal Atomic # 7 Polarization: -116.67 SS G_CDS: -11.70 Total: -128.37 kcal Atomic # 8 Polarization: -49.13 SS G_CDS: -0.09 Total: -49.22 kcal Atomic # 14 Polarization: 48.01 SS G_CDS: 2.05 Total: 50.07 kcal Total: -71.86 -1.66 -73.51 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732032933.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.920 kcal (2) G-P(sol) polarization free energy of solvation -71.857 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.937 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.657 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.514 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.593 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds