Wall clock time and date at job start Tue Mar 31 2020 20:50:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.36939 * 119.99691 * 2 1 4 4 H 1.08000 * 120.00208 * 43.15983 * 3 2 1 5 5 C 1.38816 * 119.99960 * 223.15219 * 3 2 1 6 6 N 1.31617 * 119.99625 * 21.72717 * 5 3 2 7 7 Si 1.86797 * 120.00076 * 201.71617 * 5 3 2 8 8 H 1.48497 * 109.46913 * 90.00355 * 7 5 3 9 9 H 1.48503 * 109.47365 * 330.00954 * 7 5 3 10 10 H 1.48499 * 109.47156 * 210.00483 * 7 5 3 11 11 C 1.46497 * 120.00369 * 180.02562 * 2 1 3 12 12 C 1.53007 * 109.47122 * 269.99870 * 11 2 1 13 13 H 1.08996 * 110.88119 * 305.69980 * 12 11 2 14 14 C 1.55155 * 110.99975 * 69.58008 * 12 11 2 15 15 C 1.54320 * 102.93976 * 153.57786 * 14 12 11 16 16 N 1.47029 * 107.27317 * 337.80634 * 15 14 12 17 17 C 1.34776 * 125.64857 * 179.00114 * 16 15 14 18 18 O 1.21284 * 119.99624 * 183.09887 * 17 16 15 19 19 C 1.50701 * 120.00313 * 3.08887 * 17 16 15 20 20 H 1.08997 * 109.49650 * 326.85020 * 19 17 16 21 21 C 1.53034 * 109.49908 * 206.77959 * 19 17 16 22 22 C 1.53035 * 109.53730 * 178.68445 * 21 19 17 23 23 C 1.53193 * 109.31235 * 61.36762 * 22 21 19 24 24 N 1.46921 * 108.77567 * 305.36445 * 23 22 21 25 25 C 1.34772 * 120.63086 * 233.63181 * 24 23 22 26 26 N 1.34775 * 120.00285 * 4.50483 * 25 24 23 27 27 O 1.21588 * 120.00130 * 184.51382 * 25 24 23 28 28 C 1.46928 * 118.73997 * 53.60647 * 24 23 22 29 29 C 1.47472 * 108.71710 * 358.97325 * 16 15 14 30 30 H 1.09008 * 109.47353 * 84.90191 * 1 2 3 31 31 H 1.09007 * 109.46946 * 204.89637 * 1 2 3 32 32 H 1.08995 * 109.47281 * 324.90138 * 1 2 3 33 33 H 0.96994 * 120.00263 * 5.33082 * 6 5 3 34 34 H 1.09001 * 109.47150 * 30.00061 * 11 2 1 35 35 H 1.09003 * 109.47190 * 149.99842 * 11 2 1 36 36 H 1.09001 * 110.72042 * 271.93531 * 14 12 11 37 37 H 1.09004 * 110.72416 * 35.21547 * 14 12 11 38 38 H 1.09001 * 109.88270 * 97.22242 * 15 14 12 39 39 H 1.09004 * 109.88560 * 218.23108 * 15 14 12 40 40 H 1.09000 * 109.46379 * 298.70658 * 21 19 17 41 41 H 1.09005 * 109.46122 * 58.68051 * 21 19 17 42 42 H 1.09001 * 109.49717 * 181.31584 * 22 21 19 43 43 H 1.09004 * 109.49962 * 301.41417 * 22 21 19 44 44 H 1.08999 * 109.58167 * 65.15193 * 23 22 21 45 45 H 1.08995 * 109.58706 * 185.42970 * 23 22 21 46 46 H 0.97005 * 119.99396 * 4.88308 * 26 25 24 47 47 H 0.96997 * 120.00299 * 184.87369 * 26 25 24 48 48 H 1.08995 * 109.58712 * 186.60241 * 28 24 23 49 49 H 1.08998 * 109.58344 * 66.17582 * 28 24 23 50 50 H 1.08997 * 110.34981 * 265.24981 * 29 16 15 51 51 H 1.09000 * 110.40125 * 142.91791 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1496 1.1860 0.0000 4 1 1.8287 1.9948 0.6398 5 6 3.2562 1.3486 -0.8222 6 7 3.4068 0.5827 -1.8819 7 14 4.5312 2.6546 -0.4248 8 1 5.5789 2.0729 0.4521 9 1 3.8760 3.7900 0.2730 10 1 5.1523 3.1392 -1.6836 11 6 2.1975 -1.2687 -0.0006 12 6 2.4526 -1.7110 1.4418 13 1 2.9534 -0.9246 2.0065 14 6 1.1314 -2.1380 2.1343 15 6 1.6114 -3.1366 3.2085 16 7 2.9229 -3.6434 2.7785 17 6 3.6851 -4.5246 3.4560 18 8 4.7794 -4.8312 3.0323 19 6 3.1778 -5.1288 4.7400 20 1 2.5571 -4.4019 5.2637 21 6 4.3641 -5.5192 5.6245 22 6 3.8496 -6.1027 6.9424 23 6 3.0278 -7.3625 6.6520 24 7 1.9714 -7.0263 5.6878 25 6 0.6811 -7.3071 5.9572 26 7 0.3388 -7.8183 7.1564 27 8 -0.1742 -7.0994 5.1184 28 6 2.3484 -6.3775 4.4246 29 6 3.2663 -3.0284 1.4828 30 1 -0.3634 0.0913 -1.0237 31 1 -0.3633 -0.9322 0.4327 32 1 -0.3633 0.8407 0.5909 33 1 2.7082 -0.0420 -2.1322 34 1 1.6085 -2.0281 -0.5148 35 1 3.1499 -1.1380 -0.5144 36 1 0.6433 -1.2798 2.5963 37 1 0.4641 -2.6265 1.4243 38 1 1.7064 -2.6304 4.1692 39 1 0.9024 -3.9603 3.2922 40 1 4.9711 -6.2640 5.1100 41 1 4.9696 -4.6364 5.8303 42 1 4.6947 -6.3589 7.5813 43 1 3.2222 -5.3670 7.4457 44 1 3.6751 -8.1320 6.2314 45 1 2.5794 -7.7273 7.5761 46 1 1.0093 -7.9180 7.8503 47 1 -0.5779 -8.0863 7.3256 48 1 1.4496 -6.0910 3.8786 49 1 2.9402 -7.0668 3.8223 50 1 2.9708 -3.6826 0.6626 51 1 4.3343 -2.8163 1.4341 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001732073786.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:50:25 Heat of formation + Delta-G solvation = -45.282656 kcal Electronic energy + Delta-G solvation = -30692.505947 eV Core-core repulsion = 26627.184315 eV Total energy + Delta-G solvation = -4065.321632 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -40.94591 -39.86968 -38.04125 -37.07057 -35.52121 -34.35368 -32.74755 -32.27462 -31.37459 -30.55124 -29.22264 -26.25240 -25.77057 -25.35373 -24.28616 -22.86924 -21.83006 -21.18358 -20.02914 -19.71402 -19.06746 -18.71745 -17.36718 -17.17648 -17.05329 -16.08291 -15.83591 -15.23535 -15.14259 -15.01495 -14.65153 -14.24508 -13.90803 -13.85474 -13.70410 -13.54057 -13.47251 -13.33473 -13.22588 -12.86321 -12.65624 -12.16403 -11.95233 -11.83400 -11.47588 -11.36642 -11.28555 -11.14641 -11.11277 -10.97301 -10.70416 -10.54514 -10.41054 -10.26941 -10.07422 -10.06786 -9.88518 -9.74636 -9.29632 -9.01133 -8.49381 -8.37386 -6.75861 -5.99064 -3.46228 2.26464 2.67841 2.85926 3.08644 3.49821 3.51236 3.67544 3.67684 4.23296 4.37880 4.46618 4.55562 4.59075 4.62645 4.87766 4.90277 4.97821 5.05140 5.16049 5.20506 5.32137 5.35402 5.41143 5.44619 5.50785 5.54399 5.64231 5.74310 5.78533 5.90402 5.96054 5.98534 6.08563 6.13908 6.29249 6.31798 6.35683 6.38485 6.44825 6.53125 6.53885 6.73223 6.79954 6.98502 7.19129 7.45091 7.63951 8.14909 8.20573 8.24450 8.61160 9.15105 9.80372 10.29486 11.16181 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.018566 B = 0.002577 C = 0.002382 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1507.747090 B =10863.565601 C =11750.636973 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.122 3.878 2 N -0.598 5.598 3 C -0.355 4.355 4 H 0.047 0.953 5 C -0.015 4.015 6 N -0.906 5.906 7 Si 1.067 2.933 8 H -0.291 1.291 9 H -0.291 1.291 10 H -0.288 1.288 11 C 0.154 3.846 12 C -0.111 4.111 13 H 0.084 0.916 14 C -0.118 4.118 15 C 0.098 3.902 16 N -0.611 5.611 17 C 0.533 3.467 18 O -0.541 6.541 19 C -0.118 4.118 20 H 0.094 0.906 21 C -0.103 4.103 22 C -0.135 4.135 23 C 0.110 3.890 24 N -0.626 5.626 25 C 0.709 3.291 26 N -0.868 5.868 27 O -0.589 6.589 28 C 0.144 3.856 29 C 0.109 3.891 30 H 0.002 0.998 31 H 0.029 0.971 32 H 0.030 0.970 33 H 0.270 0.730 34 H 0.031 0.969 35 H 0.076 0.924 36 H 0.079 0.921 37 H 0.071 0.929 38 H 0.063 0.937 39 H 0.066 0.934 40 H 0.079 0.921 41 H 0.072 0.928 42 H 0.081 0.919 43 H 0.069 0.931 44 H 0.074 0.926 45 H 0.078 0.922 46 H 0.395 0.605 47 H 0.414 0.586 48 H 0.099 0.901 49 H 0.075 0.925 50 H 0.066 0.934 51 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.512 -17.544 21.291 27.702 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.023 4.023 2 N -0.322 5.322 3 C -0.485 4.485 4 H 0.065 0.935 5 C -0.219 4.219 6 N -0.544 5.544 7 Si 0.897 3.103 8 H -0.218 1.218 9 H -0.218 1.218 10 H -0.215 1.215 11 C 0.027 3.973 12 C -0.132 4.132 13 H 0.102 0.898 14 C -0.156 4.156 15 C -0.024 4.024 16 N -0.345 5.345 17 C 0.320 3.680 18 O -0.419 6.419 19 C -0.141 4.141 20 H 0.112 0.888 21 C -0.141 4.141 22 C -0.173 4.173 23 C -0.014 4.014 24 N -0.364 5.364 25 C 0.409 3.591 26 N -0.439 5.439 27 O -0.467 6.467 28 C 0.020 3.980 29 C -0.014 4.014 30 H 0.020 0.980 31 H 0.048 0.952 32 H 0.048 0.952 33 H 0.081 0.919 34 H 0.049 0.951 35 H 0.094 0.906 36 H 0.098 0.902 37 H 0.089 0.911 38 H 0.081 0.919 39 H 0.084 0.916 40 H 0.098 0.902 41 H 0.091 0.909 42 H 0.100 0.900 43 H 0.087 0.913 44 H 0.092 0.908 45 H 0.096 0.904 46 H 0.226 0.774 47 H 0.246 0.754 48 H 0.118 0.882 49 H 0.093 0.907 50 H 0.084 0.916 51 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -0.907 -16.914 19.949 26.170 hybrid contribution -1.639 -0.666 1.103 2.085 sum -2.546 -17.579 21.052 27.545 Atomic orbital electron populations 1.21144 0.85918 0.97931 0.97285 1.43711 0.99868 1.01971 1.86606 1.19821 1.14087 0.92907 1.21657 0.93539 1.26070 1.01272 1.02169 0.92393 1.70747 1.37578 1.24626 1.21407 0.83491 0.75869 0.75330 0.75648 1.21814 1.21756 1.21462 1.20801 0.98412 0.87018 0.91097 1.23086 0.93866 0.94696 1.01596 0.89774 1.22644 0.98468 0.97672 0.96795 1.22146 0.84087 0.97482 0.98728 1.48642 1.20101 1.43128 1.22587 1.19963 0.84388 0.78716 0.84961 1.90702 1.20494 1.61386 1.69281 1.21678 0.98984 0.98473 0.94940 0.88825 1.21370 0.96135 1.02224 0.94321 1.21957 1.00108 0.97301 0.97959 1.21706 0.89890 0.97619 0.92161 1.47202 1.04793 1.64025 1.20387 1.15839 0.82463 0.78064 0.82721 1.43158 1.15183 1.71207 1.14337 1.90990 1.48602 1.59714 1.47372 1.21286 0.99896 0.92202 0.84614 1.22398 1.00874 0.94233 0.83888 0.98033 0.95192 0.95177 0.91930 0.95058 0.90599 0.90198 0.91080 0.91868 0.91580 0.90245 0.90947 0.89998 0.91268 0.90771 0.90351 0.77404 0.75411 0.88238 0.90698 0.91584 0.90480 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 2.59 10.39 59.84 0.62 3.21 16 2 N -0.60 -14.60 2.46 -181.11 -0.45 -15.04 16 3 C -0.36 -9.75 9.39 -15.06 -0.14 -9.90 16 4 H 0.05 1.31 7.92 -52.49 -0.42 0.90 16 5 C -0.01 -0.42 4.89 -17.43 -0.09 -0.50 16 6 N -0.91 -26.82 12.40 55.49 0.69 -26.13 16 7 Si 1.07 25.20 29.97 -169.99 -5.09 20.11 16 8 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 9 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 10 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 11 C 0.15 3.39 4.29 -4.04 -0.02 3.37 16 12 C -0.11 -2.04 3.27 -88.47 -0.29 -2.33 16 13 H 0.08 1.74 8.14 -51.93 -0.42 1.32 16 14 C -0.12 -1.79 5.05 -24.90 -0.13 -1.92 16 15 C 0.10 1.30 6.14 -3.06 -0.02 1.28 16 16 N -0.61 -9.24 3.33 -170.48 -0.57 -9.81 16 17 C 0.53 7.87 6.94 -10.99 -0.08 7.80 16 18 O -0.54 -9.80 16.39 5.55 0.09 -9.71 16 19 C -0.12 -1.27 2.24 -91.65 -0.20 -1.48 16 20 H 0.09 0.97 7.19 -51.93 -0.37 0.59 16 21 C -0.10 -0.92 4.70 -26.70 -0.13 -1.04 16 22 C -0.13 -0.76 6.08 -26.61 -0.16 -0.92 16 23 C 0.11 0.58 6.43 -3.71 -0.02 0.55 16 24 N -0.63 -5.47 2.97 -178.51 -0.53 -6.00 16 25 C 0.71 7.29 8.57 -86.92 -0.75 6.54 16 26 N -0.87 -4.91 8.77 27.63 0.24 -4.67 16 27 O -0.59 -8.83 16.61 5.29 0.09 -8.74 16 28 C 0.14 1.53 5.69 -3.71 -0.02 1.51 16 29 C 0.11 1.86 6.39 -2.51 -0.02 1.85 16 30 H 0.00 0.03 8.14 -51.92 -0.42 -0.39 16 31 H 0.03 0.54 6.34 -51.93 -0.33 0.21 16 32 H 0.03 0.62 8.08 -51.93 -0.42 0.20 16 33 H 0.27 8.06 7.17 -40.82 -0.29 7.76 16 34 H 0.03 0.65 7.97 -51.93 -0.41 0.23 16 35 H 0.08 1.93 5.82 -51.93 -0.30 1.62 16 36 H 0.08 1.23 8.14 -51.93 -0.42 0.81 16 37 H 0.07 1.07 7.35 -51.93 -0.38 0.68 16 38 H 0.06 0.76 7.86 -51.93 -0.41 0.35 16 39 H 0.07 0.81 7.68 -51.93 -0.40 0.41 16 40 H 0.08 0.78 7.91 -51.93 -0.41 0.37 16 41 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 42 H 0.08 0.32 8.14 -51.93 -0.42 -0.10 16 43 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 44 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 45 H 0.08 0.20 5.58 -51.93 -0.29 -0.09 16 46 H 0.40 1.06 6.32 -40.82 -0.26 0.80 16 47 H 0.41 1.93 8.93 -40.82 -0.36 1.57 16 48 H 0.10 1.24 6.56 -51.93 -0.34 0.90 16 49 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 50 H 0.07 1.11 8.04 -51.93 -0.42 0.69 16 51 H 0.08 1.44 8.01 -51.93 -0.42 1.02 16 LS Contribution 394.53 15.07 5.95 5.95 Total: -1.00 -35.11 394.53 -9.42 -44.53 By element: Atomic # 1 Polarization: 9.90 SS G_CDS: -8.41 Total: 1.49 kcal Atomic # 6 Polarization: 9.45 SS G_CDS: -1.43 Total: 8.02 kcal Atomic # 7 Polarization: -61.04 SS G_CDS: -0.61 Total: -61.65 kcal Atomic # 8 Polarization: -18.62 SS G_CDS: 0.18 Total: -18.44 kcal Atomic # 14 Polarization: 25.20 SS G_CDS: -5.09 Total: 20.11 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -35.11 -9.42 -44.53 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732073786.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.753 kcal (2) G-P(sol) polarization free energy of solvation -35.107 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.860 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.423 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.530 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.283 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds