Wall clock time and date at job start Tue Mar 31 2020 20:50:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.36939 * 119.99691 * 2 1 4 4 H 1.08000 * 120.00208 * 43.15983 * 3 2 1 5 5 C 1.38816 * 119.99960 * 223.15219 * 3 2 1 6 6 N 1.31617 * 119.99625 * 21.72717 * 5 3 2 7 7 Si 1.86797 * 120.00076 * 201.71617 * 5 3 2 8 8 H 1.48497 * 109.46913 * 90.00355 * 7 5 3 9 9 H 1.48503 * 109.47365 * 330.00954 * 7 5 3 10 10 H 1.48499 * 109.47156 * 210.00483 * 7 5 3 11 11 C 1.46497 * 120.00369 * 180.02562 * 2 1 3 12 12 C 1.53007 * 109.47122 * 269.99870 * 11 2 1 13 13 H 1.08996 * 110.88119 * 305.69980 * 12 11 2 14 14 C 1.55155 * 110.99975 * 69.58008 * 12 11 2 15 15 C 1.54320 * 102.93976 * 153.57786 * 14 12 11 16 16 N 1.47029 * 107.27317 * 337.80634 * 15 14 12 17 17 C 1.34776 * 125.64857 * 179.00114 * 16 15 14 18 18 O 1.21284 * 119.99624 * 183.09887 * 17 16 15 19 19 C 1.50701 * 120.00313 * 3.08887 * 17 16 15 20 20 H 1.08997 * 109.49650 * 326.85020 * 19 17 16 21 21 C 1.53034 * 109.49908 * 206.77959 * 19 17 16 22 22 C 1.53035 * 109.53730 * 178.68445 * 21 19 17 23 23 C 1.53193 * 109.31235 * 61.36762 * 22 21 19 24 24 N 1.46921 * 108.77567 * 305.36445 * 23 22 21 25 25 C 1.34772 * 120.63086 * 233.63181 * 24 23 22 26 26 N 1.34775 * 120.00285 * 4.50483 * 25 24 23 27 27 O 1.21588 * 120.00130 * 184.51382 * 25 24 23 28 28 C 1.46928 * 118.73997 * 53.60647 * 24 23 22 29 29 C 1.47472 * 108.71710 * 358.97325 * 16 15 14 30 30 H 1.09008 * 109.47353 * 84.90191 * 1 2 3 31 31 H 1.09007 * 109.46946 * 204.89637 * 1 2 3 32 32 H 1.08995 * 109.47281 * 324.90138 * 1 2 3 33 33 H 0.96994 * 120.00263 * 5.33082 * 6 5 3 34 34 H 1.09001 * 109.47150 * 30.00061 * 11 2 1 35 35 H 1.09003 * 109.47190 * 149.99842 * 11 2 1 36 36 H 1.09001 * 110.72042 * 271.93531 * 14 12 11 37 37 H 1.09004 * 110.72416 * 35.21547 * 14 12 11 38 38 H 1.09001 * 109.88270 * 97.22242 * 15 14 12 39 39 H 1.09004 * 109.88560 * 218.23108 * 15 14 12 40 40 H 1.09000 * 109.46379 * 298.70658 * 21 19 17 41 41 H 1.09005 * 109.46122 * 58.68051 * 21 19 17 42 42 H 1.09001 * 109.49717 * 181.31584 * 22 21 19 43 43 H 1.09004 * 109.49962 * 301.41417 * 22 21 19 44 44 H 1.08999 * 109.58167 * 65.15193 * 23 22 21 45 45 H 1.08995 * 109.58706 * 185.42970 * 23 22 21 46 46 H 0.97005 * 119.99396 * 4.88308 * 26 25 24 47 47 H 0.96997 * 120.00299 * 184.87369 * 26 25 24 48 48 H 1.08995 * 109.58712 * 186.60241 * 28 24 23 49 49 H 1.08998 * 109.58344 * 66.17582 * 28 24 23 50 50 H 1.08997 * 110.34981 * 265.24981 * 29 16 15 51 51 H 1.09000 * 110.40125 * 142.91791 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1496 1.1860 0.0000 4 1 1.8287 1.9948 0.6398 5 6 3.2562 1.3486 -0.8222 6 7 3.4068 0.5827 -1.8819 7 14 4.5312 2.6546 -0.4248 8 1 5.5789 2.0729 0.4521 9 1 3.8760 3.7900 0.2730 10 1 5.1523 3.1392 -1.6836 11 6 2.1975 -1.2687 -0.0006 12 6 2.4526 -1.7110 1.4418 13 1 2.9534 -0.9246 2.0065 14 6 1.1314 -2.1380 2.1343 15 6 1.6114 -3.1366 3.2085 16 7 2.9229 -3.6434 2.7785 17 6 3.6851 -4.5246 3.4560 18 8 4.7794 -4.8312 3.0323 19 6 3.1778 -5.1288 4.7400 20 1 2.5571 -4.4019 5.2637 21 6 4.3641 -5.5192 5.6245 22 6 3.8496 -6.1027 6.9424 23 6 3.0278 -7.3625 6.6520 24 7 1.9714 -7.0263 5.6878 25 6 0.6811 -7.3071 5.9572 26 7 0.3388 -7.8183 7.1564 27 8 -0.1742 -7.0994 5.1184 28 6 2.3484 -6.3775 4.4246 29 6 3.2663 -3.0284 1.4828 30 1 -0.3634 0.0913 -1.0237 31 1 -0.3633 -0.9322 0.4327 32 1 -0.3633 0.8407 0.5909 33 1 2.7082 -0.0420 -2.1322 34 1 1.6085 -2.0281 -0.5148 35 1 3.1499 -1.1380 -0.5144 36 1 0.6433 -1.2798 2.5963 37 1 0.4641 -2.6265 1.4243 38 1 1.7064 -2.6304 4.1692 39 1 0.9024 -3.9603 3.2922 40 1 4.9711 -6.2640 5.1100 41 1 4.9696 -4.6364 5.8303 42 1 4.6947 -6.3589 7.5813 43 1 3.2222 -5.3670 7.4457 44 1 3.6751 -8.1320 6.2314 45 1 2.5794 -7.7273 7.5761 46 1 1.0093 -7.9180 7.8503 47 1 -0.5779 -8.0863 7.3256 48 1 1.4496 -6.0910 3.8786 49 1 2.9402 -7.0668 3.8223 50 1 2.9708 -3.6826 0.6626 51 1 4.3343 -2.8163 1.4341 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001732073786.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:50:24 Heat of formation + Delta-G solvation = -69.930724 kcal Electronic energy + Delta-G solvation = -30693.574768 eV Core-core repulsion = 26627.184315 eV Total energy + Delta-G solvation = -4066.390453 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 1.44 seconds Orbital eigenvalues (eV) -41.82764 -40.92630 -39.29113 -38.06563 -37.27003 -35.09677 -33.80481 -33.39382 -32.78309 -31.83872 -30.55133 -27.74834 -27.28907 -26.47776 -25.42045 -23.94189 -23.01374 -22.52230 -21.32711 -20.72632 -20.11218 -19.42624 -19.16769 -18.27390 -17.93851 -17.38993 -16.72702 -16.32817 -16.06559 -15.89380 -15.79994 -15.64841 -15.44543 -15.36215 -15.24843 -14.80186 -14.47691 -14.34135 -14.16604 -13.95177 -13.77770 -13.55161 -13.38517 -13.20837 -12.82693 -12.73877 -12.58580 -12.56502 -12.13965 -12.01971 -11.98283 -11.92060 -11.75409 -11.66581 -11.52752 -11.37053 -11.28808 -10.92712 -10.71434 -10.48915 -9.77951 -9.67260 -8.84852 -8.10994 -5.62962 1.34229 1.56395 1.63014 1.71346 1.80336 1.95337 2.11453 2.62762 3.16825 3.19632 3.32744 3.52950 3.62641 3.65047 3.72993 3.85419 3.98547 4.01702 4.10738 4.15310 4.22321 4.37627 4.44213 4.51119 4.51704 4.54516 4.68351 4.68765 4.70578 4.74943 4.81630 4.85220 4.93924 4.95769 5.00613 5.05455 5.08930 5.11176 5.19777 5.31861 5.36162 5.38115 5.42139 5.80260 5.95242 6.01154 6.41021 6.44055 6.89023 7.00117 7.14404 7.59050 7.74513 8.22227 8.95624 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.018566 B = 0.002577 C = 0.002382 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1507.747090 B =10863.565601 C =11750.636973 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.124 3.876 2 N -0.615 5.615 3 C -0.357 4.357 4 H 0.039 0.961 5 C -0.064 4.064 6 N -0.932 5.932 7 Si 1.111 2.889 8 H -0.284 1.284 9 H -0.271 1.271 10 H -0.292 1.292 11 C 0.160 3.840 12 C -0.101 4.101 13 H 0.059 0.941 14 C -0.109 4.109 15 C 0.105 3.895 16 N -0.614 5.614 17 C 0.528 3.472 18 O -0.580 6.580 19 C -0.104 4.104 20 H 0.105 0.895 21 C -0.103 4.103 22 C -0.125 4.125 23 C 0.104 3.896 24 N -0.623 5.623 25 C 0.703 3.297 26 N -0.846 5.846 27 O -0.642 6.642 28 C 0.149 3.851 29 C 0.115 3.885 30 H -0.008 1.008 31 H 0.063 0.937 32 H 0.033 0.967 33 H 0.256 0.744 34 H 0.042 0.958 35 H 0.037 0.963 36 H 0.083 0.917 37 H 0.078 0.922 38 H 0.082 0.918 39 H 0.084 0.916 40 H 0.067 0.933 41 H 0.063 0.937 42 H 0.107 0.893 43 H 0.075 0.925 44 H 0.081 0.919 45 H 0.113 0.887 46 H 0.413 0.587 47 H 0.421 0.579 48 H 0.081 0.919 49 H 0.068 0.932 50 H 0.068 0.932 51 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.206 -18.674 24.787 31.199 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.021 4.021 2 N -0.339 5.339 3 C -0.488 4.488 4 H 0.056 0.944 5 C -0.262 4.262 6 N -0.571 5.571 7 Si 0.936 3.064 8 H -0.211 1.211 9 H -0.196 1.196 10 H -0.218 1.218 11 C 0.033 3.967 12 C -0.123 4.123 13 H 0.077 0.923 14 C -0.146 4.146 15 C -0.017 4.017 16 N -0.347 5.347 17 C 0.317 3.683 18 O -0.460 6.460 19 C -0.126 4.126 20 H 0.123 0.877 21 C -0.141 4.141 22 C -0.163 4.163 23 C -0.018 4.018 24 N -0.360 5.360 25 C 0.403 3.597 26 N -0.417 5.417 27 O -0.524 6.524 28 C 0.024 3.976 29 C -0.008 4.008 30 H 0.010 0.990 31 H 0.081 0.919 32 H 0.052 0.948 33 H 0.066 0.934 34 H 0.061 0.939 35 H 0.055 0.945 36 H 0.102 0.898 37 H 0.097 0.903 38 H 0.100 0.900 39 H 0.102 0.898 40 H 0.086 0.914 41 H 0.082 0.918 42 H 0.125 0.875 43 H 0.093 0.907 44 H 0.099 0.901 45 H 0.131 0.869 46 H 0.246 0.754 47 H 0.254 0.746 48 H 0.099 0.901 49 H 0.086 0.914 50 H 0.086 0.914 51 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -1.616 -18.073 23.534 29.717 hybrid contribution -1.447 -0.362 0.022 1.492 sum -3.063 -18.435 23.556 30.068 Atomic orbital electron populations 1.21201 0.83946 0.99890 0.97036 1.43934 1.01295 1.01799 1.86822 1.19987 1.14310 0.93797 1.20683 0.94383 1.27313 1.03376 1.03544 0.91999 1.70865 1.37409 1.25874 1.22994 0.82901 0.74104 0.73886 0.75494 1.21113 1.19629 1.21831 1.20674 0.96475 0.86528 0.93005 1.22726 0.96075 0.94396 0.99070 0.92281 1.22573 0.96558 0.98323 0.97174 1.22201 0.83222 0.97618 0.98625 1.48720 1.20927 1.43185 1.21824 1.20758 0.83727 0.77977 0.85806 1.90680 1.22262 1.62544 1.70484 1.21636 0.99810 0.98417 0.92778 0.87731 1.21403 0.95177 1.01799 0.95718 1.21928 1.01038 0.97269 0.96070 1.22011 0.89270 0.97732 0.92757 1.47181 1.05221 1.63410 1.20199 1.16071 0.82284 0.78085 0.83288 1.42935 1.16098 1.69552 1.13131 1.90954 1.50167 1.61999 1.49306 1.21049 0.98769 0.92101 0.85639 1.22134 0.99306 0.93921 0.85488 0.99024 0.91857 0.94809 0.93446 0.93940 0.94486 0.89803 0.90346 0.89977 0.89766 0.91405 0.91791 0.87484 0.90672 0.90064 0.86886 0.75368 0.74617 0.90082 0.91400 0.91366 0.92745 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 5.13 10.39 127.77 1.33 6.46 16 2 N -0.61 -30.26 2.46 -726.92 -1.79 -32.05 16 3 C -0.36 -19.90 9.39 84.03 0.79 -19.12 16 4 H 0.04 2.16 7.92 -2.91 -0.02 2.14 16 5 C -0.06 -3.64 4.89 84.86 0.42 -3.22 16 6 N -0.93 -56.89 12.40 21.65 0.27 -56.62 16 7 Si 1.11 51.48 29.97 68.60 2.06 53.54 16 8 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 9 H -0.27 -11.57 7.11 99.48 0.71 -10.86 16 10 H -0.29 -13.62 7.11 99.48 0.71 -12.91 16 11 C 0.16 7.20 4.29 86.38 0.37 7.57 16 12 C -0.10 -3.77 3.27 -9.40 -0.03 -3.80 16 13 H 0.06 2.51 8.14 -2.39 -0.02 2.49 16 14 C -0.11 -3.13 5.05 31.78 0.16 -2.97 16 15 C 0.11 2.58 6.14 86.73 0.53 3.11 16 16 N -0.61 -18.34 3.33 -811.67 -2.70 -21.04 16 17 C 0.53 15.54 6.94 87.66 0.61 16.15 16 18 O -0.58 -21.47 16.39 -3.04 -0.05 -21.52 16 19 C -0.10 -2.10 2.24 -11.46 -0.03 -2.13 16 20 H 0.10 1.90 7.19 -2.39 -0.02 1.88 16 21 C -0.10 -1.67 4.70 30.62 0.14 -1.52 16 22 C -0.12 -0.95 6.08 30.67 0.19 -0.77 16 23 C 0.10 0.71 6.43 86.36 0.56 1.26 16 24 N -0.62 -9.42 2.97 -836.93 -2.49 -11.91 16 25 C 0.70 12.93 8.57 179.06 1.54 14.46 16 26 N -0.85 -6.87 8.77 -184.75 -1.62 -8.49 16 27 O -0.64 -18.66 16.61 -3.99 -0.07 -18.73 16 28 C 0.15 3.03 5.69 86.36 0.49 3.52 16 29 C 0.12 4.05 6.39 86.84 0.56 4.61 16 30 H -0.01 -0.37 8.14 -2.38 -0.02 -0.39 16 31 H 0.06 2.16 6.34 -2.38 -0.02 2.15 16 32 H 0.03 1.36 8.08 -2.39 -0.02 1.34 16 33 H 0.26 15.88 7.17 -92.71 -0.66 15.22 16 34 H 0.04 1.78 7.97 -2.39 -0.02 1.76 16 35 H 0.04 1.97 5.82 -2.39 -0.01 1.96 16 36 H 0.08 2.40 8.14 -2.39 -0.02 2.38 16 37 H 0.08 2.17 7.35 -2.39 -0.02 2.16 16 38 H 0.08 1.75 7.86 -2.39 -0.02 1.73 16 39 H 0.08 1.84 7.68 -2.38 -0.02 1.82 16 40 H 0.07 1.27 7.91 -2.39 -0.02 1.25 16 41 H 0.06 1.15 8.14 -2.38 -0.02 1.13 16 42 H 0.11 0.37 8.14 -2.39 -0.02 0.35 16 43 H 0.07 0.55 8.14 -2.38 -0.02 0.53 16 44 H 0.08 0.51 8.14 -2.39 -0.02 0.49 16 45 H 0.11 -0.01 5.58 -2.39 -0.01 -0.02 16 46 H 0.41 0.43 6.32 -92.70 -0.59 -0.16 16 47 H 0.42 2.74 8.93 -92.71 -0.83 1.92 16 48 H 0.08 1.97 6.56 -2.39 -0.02 1.96 16 49 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16 50 H 0.07 2.36 8.04 -2.39 -0.02 2.34 16 51 H 0.05 2.14 8.01 -2.39 -0.02 2.13 16 Total: -1.00 -79.94 394.53 0.87 -79.08 By element: Atomic # 1 Polarization: 14.50 SS G_CDS: -0.36 Total: 14.14 kcal Atomic # 6 Polarization: 16.00 SS G_CDS: 7.61 Total: 23.61 kcal Atomic # 7 Polarization: -121.79 SS G_CDS: -8.33 Total: -130.12 kcal Atomic # 8 Polarization: -40.13 SS G_CDS: -0.12 Total: -40.25 kcal Atomic # 14 Polarization: 51.48 SS G_CDS: 2.06 Total: 53.54 kcal Total: -79.94 0.87 -79.08 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732073786.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.145 kcal (2) G-P(sol) polarization free energy of solvation -79.941 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.796 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.866 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.075 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.931 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.44 seconds