Wall clock time and date at job start Tue Mar 31 2020 20:50:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46509 * 1 3 3 C 1.36935 * 120.00357 * 2 1 4 4 H 1.07993 * 120.00336 * 202.31100 * 3 2 1 5 5 C 1.38817 * 119.99729 * 22.30829 * 3 2 1 6 6 N 1.31623 * 119.99961 * 9.96194 * 5 3 2 7 7 Si 1.86793 * 119.99771 * 189.95685 * 5 3 2 8 8 H 1.48500 * 109.47182 * 90.00226 * 7 5 3 9 9 H 1.48499 * 109.47222 * 210.00170 * 7 5 3 10 10 H 1.48501 * 109.47538 * 330.00188 * 7 5 3 11 11 C 1.46506 * 119.99509 * 179.97438 * 2 1 3 12 12 C 1.53000 * 109.46994 * 269.99988 * 11 2 1 13 13 H 1.08999 * 110.91733 * 57.44809 * 12 11 2 14 14 C 1.55163 * 111.00583 * 293.54862 * 12 11 2 15 15 C 1.54317 * 103.10301 * 206.51273 * 14 12 11 16 16 N 1.47026 * 107.27294 * 22.10542 * 15 14 12 17 17 C 1.34771 * 125.64636 * 181.09274 * 16 15 14 18 18 O 1.21282 * 119.99547 * 174.95436 * 17 16 15 19 19 C 1.50698 * 120.00341 * 354.95814 * 17 16 15 20 20 H 1.08998 * 109.49396 * 334.16552 * 19 17 16 21 21 C 1.53039 * 109.49447 * 214.07099 * 19 17 16 22 22 C 1.53043 * 109.53573 * 178.68304 * 21 19 17 23 23 C 1.53189 * 109.31425 * 61.36501 * 22 21 19 24 24 N 1.46929 * 108.77358 * 305.36699 * 23 22 21 25 25 C 1.34779 * 120.62855 * 233.63204 * 24 23 22 26 26 N 1.34776 * 120.00166 * 5.02307 * 25 24 23 27 27 O 1.21591 * 120.00133 * 185.02646 * 25 24 23 28 28 C 1.46922 * 118.74144 * 53.60804 * 24 23 22 29 29 C 1.47426 * 108.70247 * 1.05738 * 16 15 14 30 30 H 1.08997 * 109.47101 * 273.64363 * 1 2 3 31 31 H 1.09005 * 109.46644 * 33.64156 * 1 2 3 32 32 H 1.08996 * 109.46970 * 153.63818 * 1 2 3 33 33 H 0.96998 * 119.99831 * 180.02562 * 6 5 3 34 34 H 1.09000 * 109.46789 * 150.00338 * 11 2 1 35 35 H 1.08993 * 109.47491 * 29.99795 * 11 2 1 36 36 H 1.09004 * 110.71734 * 88.05583 * 14 12 11 37 37 H 1.09005 * 110.71769 * 324.97053 * 14 12 11 38 38 H 1.09004 * 109.88289 * 141.52266 * 15 14 12 39 39 H 1.09000 * 109.88381 * 262.68703 * 15 14 12 40 40 H 1.08998 * 109.46053 * 298.69973 * 21 19 17 41 41 H 1.09003 * 109.46571 * 58.66146 * 21 19 17 42 42 H 1.08996 * 109.49966 * 301.41243 * 22 21 19 43 43 H 1.09001 * 109.49675 * 181.31520 * 22 21 19 44 44 H 1.09004 * 109.59158 * 185.58058 * 23 22 21 45 45 H 1.09003 * 109.70554 * 65.22167 * 23 22 21 46 46 H 0.97003 * 119.99591 * 354.97317 * 26 25 24 47 47 H 0.97003 * 120.00358 * 174.97487 * 26 25 24 48 48 H 1.09004 * 109.58768 * 186.60492 * 28 24 23 49 49 H 1.08999 * 109.58595 * 66.17927 * 28 24 23 50 50 H 1.08996 * 110.36421 * 94.70649 * 29 16 15 51 51 H 1.08990 * 110.36767 * 217.03260 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1498 1.1858 0.0000 4 1 3.1691 1.2209 -0.3550 5 6 1.5337 2.3431 0.4564 6 7 0.3705 2.2719 1.0682 7 14 2.3555 4.0011 0.2022 8 1 1.9181 4.5768 -1.0950 9 1 1.9715 4.9182 1.3053 10 1 3.8302 3.8268 0.1942 11 6 2.1975 -1.2688 0.0006 12 6 2.4525 -1.7099 1.4433 13 1 1.5158 -1.8037 1.9928 14 6 3.4224 -0.7337 2.1601 15 6 4.0804 -1.6221 3.2368 16 7 3.9431 -3.0176 2.7949 17 6 4.3723 -4.1015 3.4712 18 8 4.1246 -5.2133 3.0549 19 6 5.1597 -3.9319 4.7449 20 1 5.6695 -2.9685 4.7319 21 6 6.1925 -5.0555 4.8602 22 6 7.0148 -4.8657 6.1369 23 6 6.0859 -4.9360 7.3530 24 7 5.0052 -3.9557 7.1799 25 6 4.7487 -3.0405 8.1356 26 7 5.5490 -2.9524 9.2164 27 8 3.7953 -2.2944 8.0226 28 6 4.2098 -3.9917 5.9452 29 6 3.2576 -3.0350 1.4898 30 1 -0.3633 0.0653 1.0256 31 1 -0.3633 0.8556 -0.5694 32 1 -0.3633 -0.9208 -0.4563 33 1 -0.0602 3.0805 1.3867 34 1 3.1499 -1.1387 -0.5133 35 1 1.6084 -2.0287 -0.5128 36 1 2.8727 0.0873 2.6206 37 1 4.1702 -0.3529 1.4644 38 1 5.1355 -1.3662 3.3345 39 1 3.5734 -1.4841 4.1918 40 1 5.6804 -6.0169 4.8977 41 1 6.8546 -5.0305 3.9947 42 1 7.5074 -3.8937 6.1112 43 1 7.7655 -5.6529 6.2065 44 1 6.6489 -4.7034 8.2570 45 1 5.6618 -5.9369 7.4342 46 1 6.2654 -3.5940 9.3430 47 1 5.4086 -2.2474 9.8677 48 1 3.5350 -3.1360 5.9201 49 1 3.6329 -4.9158 5.9090 50 1 3.9858 -3.0617 0.6792 51 1 2.5856 -3.8907 1.4257 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001732073788.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:50:32 Heat of formation + Delta-G solvation = -37.369700 kcal Electronic energy + Delta-G solvation = -30705.204967 eV Core-core repulsion = 26640.226466 eV Total energy + Delta-G solvation = -4064.978501 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -40.87621 -39.80229 -37.93232 -36.99004 -35.31436 -34.27727 -32.70610 -32.32688 -31.40041 -30.28666 -28.92118 -26.15075 -25.79009 -25.58801 -24.19795 -22.70770 -21.79146 -21.25203 -19.92169 -19.54292 -18.99301 -18.60793 -17.27305 -16.99934 -16.81156 -16.00767 -15.57460 -15.44956 -15.12069 -14.81815 -14.57482 -14.43269 -14.16473 -13.65236 -13.46864 -13.44316 -13.33738 -13.24277 -12.91482 -12.83437 -12.34215 -12.07415 -11.80790 -11.77400 -11.45476 -11.26173 -11.15084 -10.97059 -10.91389 -10.83562 -10.63109 -10.45629 -10.33382 -10.21986 -9.98473 -9.97876 -9.85539 -9.70809 -9.69295 -8.94395 -8.51659 -8.43740 -6.74444 -5.70039 -3.15804 2.32352 2.71716 2.94075 3.14345 3.38583 3.45059 3.46432 3.74919 4.28106 4.43139 4.49644 4.50442 4.63045 4.68106 4.93480 5.03339 5.10504 5.11383 5.23542 5.33938 5.38928 5.44790 5.46813 5.52768 5.58546 5.59221 5.74245 5.80120 5.86416 5.95143 5.98974 6.05111 6.07321 6.27622 6.38306 6.42963 6.43452 6.61576 6.65117 6.66623 6.81806 6.94884 7.04241 7.43857 7.53205 7.68505 7.76064 7.83854 8.22947 8.33462 8.42032 9.26320 9.89406 10.38726 11.34810 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.013815 B = 0.002796 C = 0.002515 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2026.237898 B =10012.665775 C =11131.839331 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.164 3.836 2 N -0.600 5.600 3 C -0.248 4.248 4 H 0.067 0.933 5 C 0.002 3.998 6 N -0.908 5.908 7 Si 0.901 3.099 8 H -0.289 1.289 9 H -0.292 1.292 10 H -0.280 1.280 11 C 0.163 3.837 12 C -0.115 4.115 13 H 0.075 0.925 14 C -0.104 4.104 15 C 0.094 3.906 16 N -0.611 5.611 17 C 0.534 3.466 18 O -0.547 6.547 19 C -0.119 4.119 20 H 0.094 0.906 21 C -0.102 4.102 22 C -0.134 4.134 23 C 0.110 3.890 24 N -0.627 5.627 25 C 0.708 3.292 26 N -0.869 5.869 27 O -0.586 6.586 28 C 0.144 3.856 29 C 0.107 3.893 30 H 0.026 0.974 31 H 0.047 0.953 32 H -0.005 1.005 33 H 0.252 0.748 34 H 0.046 0.954 35 H 0.040 0.960 36 H 0.091 0.909 37 H 0.073 0.927 38 H 0.061 0.939 39 H 0.066 0.934 40 H 0.079 0.921 41 H 0.070 0.930 42 H 0.069 0.931 43 H 0.081 0.919 44 H 0.078 0.922 45 H 0.073 0.927 46 H 0.395 0.605 47 H 0.414 0.586 48 H 0.100 0.900 49 H 0.075 0.925 50 H 0.065 0.935 51 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.745 -15.089 13.508 25.051 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 N -0.322 5.322 3 C -0.377 4.377 4 H 0.085 0.915 5 C -0.196 4.196 6 N -0.553 5.553 7 Si 0.732 3.268 8 H -0.216 1.216 9 H -0.218 1.218 10 H -0.206 1.206 11 C 0.035 3.965 12 C -0.138 4.138 13 H 0.094 0.906 14 C -0.141 4.141 15 C -0.029 4.029 16 N -0.343 5.343 17 C 0.321 3.679 18 O -0.425 6.425 19 C -0.141 4.141 20 H 0.112 0.888 21 C -0.140 4.140 22 C -0.172 4.172 23 C -0.014 4.014 24 N -0.365 5.365 25 C 0.408 3.592 26 N -0.439 5.439 27 O -0.463 6.463 28 C 0.020 3.980 29 C -0.015 4.015 30 H 0.044 0.956 31 H 0.065 0.935 32 H 0.013 0.987 33 H 0.062 0.938 34 H 0.064 0.936 35 H 0.058 0.942 36 H 0.110 0.890 37 H 0.091 0.909 38 H 0.079 0.921 39 H 0.084 0.916 40 H 0.097 0.903 41 H 0.089 0.911 42 H 0.088 0.912 43 H 0.099 0.901 44 H 0.096 0.904 45 H 0.092 0.908 46 H 0.225 0.775 47 H 0.246 0.754 48 H 0.118 0.882 49 H 0.093 0.907 50 H 0.083 0.917 51 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 13.834 -15.155 13.158 24.376 hybrid contribution 0.827 1.079 0.437 1.428 sum 14.660 -14.075 13.595 24.451 Atomic orbital electron populations 1.20809 0.82484 0.95640 0.99135 1.43947 1.01908 1.00578 1.85777 1.19151 0.97771 0.85323 1.35492 0.91489 1.25009 0.97567 0.98345 0.98712 1.70063 1.16903 1.26941 1.41409 0.86306 0.78848 0.84413 0.77269 1.21635 1.21798 1.20558 1.20740 0.95958 0.88351 0.91462 1.23202 0.97493 0.91596 1.01469 0.90636 1.22450 0.98256 0.97322 0.96112 1.22291 1.00371 0.80681 0.99513 1.48651 1.57503 1.06508 1.21665 1.19957 0.79533 0.83461 0.84938 1.90677 1.57942 1.24266 1.69610 1.21676 0.97424 1.01949 0.93046 0.88823 1.21373 0.96636 0.98342 0.97655 1.21939 0.97876 1.03018 0.94407 1.21700 0.88422 0.92873 0.98365 1.47199 1.36532 1.34043 1.18736 1.15855 0.82479 0.80692 0.80160 1.43162 1.37079 1.37302 1.26402 1.91014 1.30275 1.45970 1.79007 1.21290 0.92233 1.04296 0.80203 1.22444 0.95534 0.99637 0.83935 0.95550 0.93457 0.98683 0.93802 0.93589 0.94186 0.89016 0.90865 0.92058 0.91558 0.90258 0.91135 0.91219 0.90070 0.90401 0.90841 0.77487 0.75384 0.88171 0.90689 0.91705 0.90978 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 4.00 9.00 59.85 0.54 4.53 16 2 N -0.60 -14.46 2.87 -181.11 -0.52 -14.98 16 3 C -0.25 -6.45 8.74 -15.06 -0.13 -6.59 16 4 H 0.07 1.71 7.84 -52.49 -0.41 1.30 16 5 C 0.00 0.05 5.15 -17.43 -0.09 -0.04 16 6 N -0.91 -25.86 10.51 55.49 0.58 -25.28 16 7 Si 0.90 21.44 29.56 -169.99 -5.03 16.42 16 8 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 9 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 10 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 11 C 0.16 3.18 5.26 -4.04 -0.02 3.16 16 12 C -0.12 -2.05 3.30 -88.35 -0.29 -2.34 16 13 H 0.08 1.48 8.14 -51.93 -0.42 1.06 16 14 C -0.10 -1.81 5.39 -24.90 -0.13 -1.95 16 15 C 0.09 1.37 6.17 -3.07 -0.02 1.35 16 16 N -0.61 -9.20 3.33 -170.39 -0.57 -9.77 16 17 C 0.53 7.81 6.86 -10.99 -0.08 7.74 16 18 O -0.55 -9.54 16.51 5.56 0.09 -9.45 16 19 C -0.12 -1.32 2.29 -91.65 -0.21 -1.53 16 20 H 0.09 1.02 6.99 -51.93 -0.36 0.65 16 21 C -0.10 -0.91 4.79 -26.69 -0.13 -1.03 16 22 C -0.13 -0.78 6.08 -26.61 -0.16 -0.94 16 23 C 0.11 0.63 6.43 -3.71 -0.02 0.61 16 24 N -0.63 -6.01 2.97 -178.50 -0.53 -6.54 16 25 C 0.71 8.06 8.57 -86.92 -0.75 7.32 16 26 N -0.87 -5.76 8.79 27.64 0.24 -5.52 16 27 O -0.59 -9.65 16.61 5.29 0.09 -9.56 16 28 C 0.14 1.66 5.68 -3.71 -0.02 1.64 16 29 C 0.11 1.68 6.42 -2.41 -0.02 1.67 16 30 H 0.03 0.69 7.46 -51.93 -0.39 0.30 16 31 H 0.05 1.25 7.10 -51.93 -0.37 0.88 16 32 H -0.01 -0.12 7.85 -51.93 -0.41 -0.52 16 33 H 0.25 7.04 8.31 -40.82 -0.34 6.70 16 34 H 0.05 0.87 8.00 -51.93 -0.42 0.45 16 35 H 0.04 0.73 7.87 -51.93 -0.41 0.32 16 36 H 0.09 1.89 8.14 -51.93 -0.42 1.46 16 37 H 0.07 1.30 8.01 -51.93 -0.42 0.88 16 38 H 0.06 0.78 7.73 -51.93 -0.40 0.38 16 39 H 0.07 0.98 8.11 -51.93 -0.42 0.56 16 40 H 0.08 0.77 7.90 -51.93 -0.41 0.36 16 41 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 42 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 43 H 0.08 0.32 8.14 -51.93 -0.42 -0.10 16 44 H 0.08 0.24 5.56 -51.93 -0.29 -0.05 16 45 H 0.07 0.39 8.14 -51.93 -0.42 -0.04 16 46 H 0.39 1.36 6.29 -40.82 -0.26 1.10 16 47 H 0.41 2.38 8.93 -40.82 -0.36 2.01 16 48 H 0.10 1.39 7.00 -51.93 -0.36 1.03 16 49 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 50 H 0.06 0.97 8.03 -51.93 -0.42 0.55 16 51 H 0.07 1.16 7.99 -51.93 -0.41 0.74 16 LS Contribution 396.59 15.07 5.98 5.98 Total: -1.00 -33.86 396.59 -9.80 -43.66 By element: Atomic # 1 Polarization: 10.06 SS G_CDS: -8.61 Total: 1.45 kcal Atomic # 6 Polarization: 15.12 SS G_CDS: -1.53 Total: 13.59 kcal Atomic # 7 Polarization: -61.29 SS G_CDS: -0.79 Total: -62.09 kcal Atomic # 8 Polarization: -19.19 SS G_CDS: 0.18 Total: -19.01 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.03 Total: 16.42 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -33.86 -9.80 -43.66 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732073788.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.291 kcal (2) G-P(sol) polarization free energy of solvation -33.860 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.569 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.801 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.661 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.370 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds