Wall clock time and date at job start Tue Mar 31 2020 20:50:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46509 * 1 3 3 C 1.36935 * 120.00357 * 2 1 4 4 H 1.07993 * 120.00336 * 202.31100 * 3 2 1 5 5 C 1.38817 * 119.99729 * 22.30829 * 3 2 1 6 6 N 1.31623 * 119.99961 * 9.96194 * 5 3 2 7 7 Si 1.86793 * 119.99771 * 189.95685 * 5 3 2 8 8 H 1.48500 * 109.47182 * 90.00226 * 7 5 3 9 9 H 1.48499 * 109.47222 * 210.00170 * 7 5 3 10 10 H 1.48501 * 109.47538 * 330.00188 * 7 5 3 11 11 C 1.46506 * 119.99509 * 179.97438 * 2 1 3 12 12 C 1.53000 * 109.46994 * 269.99988 * 11 2 1 13 13 H 1.08999 * 110.91733 * 57.44809 * 12 11 2 14 14 C 1.55163 * 111.00583 * 293.54862 * 12 11 2 15 15 C 1.54317 * 103.10301 * 206.51273 * 14 12 11 16 16 N 1.47026 * 107.27294 * 22.10542 * 15 14 12 17 17 C 1.34771 * 125.64636 * 181.09274 * 16 15 14 18 18 O 1.21282 * 119.99547 * 174.95436 * 17 16 15 19 19 C 1.50698 * 120.00341 * 354.95814 * 17 16 15 20 20 H 1.08998 * 109.49396 * 334.16552 * 19 17 16 21 21 C 1.53039 * 109.49447 * 214.07099 * 19 17 16 22 22 C 1.53043 * 109.53573 * 178.68304 * 21 19 17 23 23 C 1.53189 * 109.31425 * 61.36501 * 22 21 19 24 24 N 1.46929 * 108.77358 * 305.36699 * 23 22 21 25 25 C 1.34779 * 120.62855 * 233.63204 * 24 23 22 26 26 N 1.34776 * 120.00166 * 5.02307 * 25 24 23 27 27 O 1.21591 * 120.00133 * 185.02646 * 25 24 23 28 28 C 1.46922 * 118.74144 * 53.60804 * 24 23 22 29 29 C 1.47426 * 108.70247 * 1.05738 * 16 15 14 30 30 H 1.08997 * 109.47101 * 273.64363 * 1 2 3 31 31 H 1.09005 * 109.46644 * 33.64156 * 1 2 3 32 32 H 1.08996 * 109.46970 * 153.63818 * 1 2 3 33 33 H 0.96998 * 119.99831 * 180.02562 * 6 5 3 34 34 H 1.09000 * 109.46789 * 150.00338 * 11 2 1 35 35 H 1.08993 * 109.47491 * 29.99795 * 11 2 1 36 36 H 1.09004 * 110.71734 * 88.05583 * 14 12 11 37 37 H 1.09005 * 110.71769 * 324.97053 * 14 12 11 38 38 H 1.09004 * 109.88289 * 141.52266 * 15 14 12 39 39 H 1.09000 * 109.88381 * 262.68703 * 15 14 12 40 40 H 1.08998 * 109.46053 * 298.69973 * 21 19 17 41 41 H 1.09003 * 109.46571 * 58.66146 * 21 19 17 42 42 H 1.08996 * 109.49966 * 301.41243 * 22 21 19 43 43 H 1.09001 * 109.49675 * 181.31520 * 22 21 19 44 44 H 1.09004 * 109.59158 * 185.58058 * 23 22 21 45 45 H 1.09003 * 109.70554 * 65.22167 * 23 22 21 46 46 H 0.97003 * 119.99591 * 354.97317 * 26 25 24 47 47 H 0.97003 * 120.00358 * 174.97487 * 26 25 24 48 48 H 1.09004 * 109.58768 * 186.60492 * 28 24 23 49 49 H 1.08999 * 109.58595 * 66.17927 * 28 24 23 50 50 H 1.08996 * 110.36421 * 94.70649 * 29 16 15 51 51 H 1.08990 * 110.36767 * 217.03260 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1498 1.1858 0.0000 4 1 3.1691 1.2209 -0.3550 5 6 1.5337 2.3431 0.4564 6 7 0.3705 2.2719 1.0682 7 14 2.3555 4.0011 0.2022 8 1 1.9181 4.5768 -1.0950 9 1 1.9715 4.9182 1.3053 10 1 3.8302 3.8268 0.1942 11 6 2.1975 -1.2688 0.0006 12 6 2.4525 -1.7099 1.4433 13 1 1.5158 -1.8037 1.9928 14 6 3.4224 -0.7337 2.1601 15 6 4.0804 -1.6221 3.2368 16 7 3.9431 -3.0176 2.7949 17 6 4.3723 -4.1015 3.4712 18 8 4.1246 -5.2133 3.0549 19 6 5.1597 -3.9319 4.7449 20 1 5.6695 -2.9685 4.7319 21 6 6.1925 -5.0555 4.8602 22 6 7.0148 -4.8657 6.1369 23 6 6.0859 -4.9360 7.3530 24 7 5.0052 -3.9557 7.1799 25 6 4.7487 -3.0405 8.1356 26 7 5.5490 -2.9524 9.2164 27 8 3.7953 -2.2944 8.0226 28 6 4.2098 -3.9917 5.9452 29 6 3.2576 -3.0350 1.4898 30 1 -0.3633 0.0653 1.0256 31 1 -0.3633 0.8556 -0.5694 32 1 -0.3633 -0.9208 -0.4563 33 1 -0.0602 3.0805 1.3867 34 1 3.1499 -1.1387 -0.5133 35 1 1.6084 -2.0287 -0.5128 36 1 2.8727 0.0873 2.6206 37 1 4.1702 -0.3529 1.4644 38 1 5.1355 -1.3662 3.3345 39 1 3.5734 -1.4841 4.1918 40 1 5.6804 -6.0169 4.8977 41 1 6.8546 -5.0305 3.9947 42 1 7.5074 -3.8937 6.1112 43 1 7.7655 -5.6529 6.2065 44 1 6.6489 -4.7034 8.2570 45 1 5.6618 -5.9369 7.4342 46 1 6.2654 -3.5940 9.3430 47 1 5.4086 -2.2474 9.8677 48 1 3.5350 -3.1360 5.9201 49 1 3.6329 -4.9158 5.9090 50 1 3.9858 -3.0617 0.6792 51 1 2.5856 -3.8907 1.4257 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001732073788.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:50:31 Heat of formation + Delta-G solvation = -60.902378 kcal Electronic energy + Delta-G solvation = -30706.225421 eV Core-core repulsion = 26640.226466 eV Total energy + Delta-G solvation = -4065.998954 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.80115 -40.89972 -39.16764 -38.02796 -37.07153 -35.11577 -33.91866 -33.39248 -32.57407 -31.71431 -30.32191 -27.96043 -27.32095 -26.48813 -25.32218 -23.81924 -23.16380 -22.49173 -21.05183 -20.70927 -20.02728 -19.41397 -18.76444 -18.21550 -17.94799 -17.32098 -16.69219 -16.57823 -16.31740 -15.91202 -15.65812 -15.43645 -15.33523 -15.18487 -14.99054 -14.61106 -14.48266 -14.30216 -14.15967 -13.93513 -13.61132 -13.48870 -13.36879 -12.89541 -12.83174 -12.63871 -12.55030 -12.38056 -12.12136 -12.07218 -12.03521 -11.96925 -11.75736 -11.65601 -11.58591 -11.38595 -11.31974 -10.89074 -10.74012 -10.56651 -9.75007 -9.64644 -8.74369 -7.76093 -5.23142 1.35365 1.48943 1.50198 1.58013 1.73643 1.99790 2.09736 2.55016 3.17295 3.33471 3.39226 3.59679 3.68707 3.73203 3.77063 3.97419 4.00913 4.03132 4.13915 4.21165 4.28664 4.42825 4.46694 4.52868 4.59119 4.64992 4.70230 4.70920 4.83884 4.85705 4.88144 4.94608 5.01893 5.03604 5.09901 5.12264 5.23092 5.38092 5.38789 5.39413 5.42340 5.50451 5.69259 5.77591 5.78895 5.98605 6.38457 6.47091 6.88290 7.03470 7.21291 7.57661 7.93047 8.37822 9.27872 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.013815 B = 0.002796 C = 0.002515 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2026.237898 B =10012.665775 C =11131.839331 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.178 3.822 2 N -0.615 5.615 3 C -0.242 4.242 4 H 0.075 0.925 5 C -0.054 4.054 6 N -0.941 5.941 7 Si 0.960 3.040 8 H -0.291 1.291 9 H -0.301 1.301 10 H -0.265 1.265 11 C 0.162 3.838 12 C -0.108 4.108 13 H 0.051 0.949 14 C -0.098 4.098 15 C 0.107 3.893 16 N -0.614 5.614 17 C 0.532 3.468 18 O -0.575 6.575 19 C -0.107 4.107 20 H 0.100 0.900 21 C -0.100 4.100 22 C -0.125 4.125 23 C 0.103 3.897 24 N -0.623 5.623 25 C 0.701 3.299 26 N -0.845 5.845 27 O -0.645 6.645 28 C 0.148 3.852 29 C 0.117 3.883 30 H -0.002 1.002 31 H 0.020 0.980 32 H 0.025 0.975 33 H 0.244 0.756 34 H 0.058 0.942 35 H 0.057 0.943 36 H 0.055 0.945 37 H 0.075 0.925 38 H 0.088 0.912 39 H 0.061 0.939 40 H 0.070 0.930 41 H 0.070 0.930 42 H 0.073 0.927 43 H 0.110 0.890 44 H 0.111 0.889 45 H 0.083 0.917 46 H 0.413 0.587 47 H 0.420 0.580 48 H 0.070 0.930 49 H 0.069 0.931 50 H 0.080 0.920 51 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.209 -16.628 14.249 28.479 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 N -0.337 5.337 3 C -0.372 4.372 4 H 0.092 0.908 5 C -0.248 4.248 6 N -0.589 5.589 7 Si 0.789 3.211 8 H -0.218 1.218 9 H -0.228 1.228 10 H -0.189 1.189 11 C 0.035 3.965 12 C -0.130 4.130 13 H 0.069 0.931 14 C -0.136 4.136 15 C -0.016 4.016 16 N -0.347 5.347 17 C 0.321 3.679 18 O -0.455 6.455 19 C -0.130 4.130 20 H 0.118 0.882 21 C -0.138 4.138 22 C -0.163 4.163 23 C -0.019 4.019 24 N -0.361 5.361 25 C 0.400 3.600 26 N -0.417 5.417 27 O -0.527 6.527 28 C 0.023 3.977 29 C -0.006 4.006 30 H 0.016 0.984 31 H 0.039 0.961 32 H 0.044 0.956 33 H 0.053 0.947 34 H 0.076 0.924 35 H 0.075 0.925 36 H 0.073 0.927 37 H 0.093 0.907 38 H 0.106 0.894 39 H 0.079 0.921 40 H 0.089 0.911 41 H 0.089 0.911 42 H 0.091 0.909 43 H 0.128 0.872 44 H 0.129 0.871 45 H 0.101 0.899 46 H 0.247 0.753 47 H 0.253 0.747 48 H 0.089 0.911 49 H 0.088 0.912 50 H 0.098 0.902 51 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 17.391 -16.754 13.920 27.873 hybrid contribution -0.246 1.444 0.194 1.478 sum 17.145 -15.310 14.114 26.973 Atomic orbital electron populations 1.20535 0.83090 0.95877 0.97234 1.44167 1.01935 1.01795 1.85833 1.19445 0.97846 0.86072 1.33828 0.90755 1.25699 0.98308 1.01470 0.99344 1.70242 1.18444 1.27004 1.43181 0.85360 0.78741 0.80550 0.76404 1.21806 1.22819 1.18932 1.20887 0.96258 0.86825 0.92534 1.22933 0.96920 0.93163 0.99993 0.93079 1.22289 0.97934 0.96677 0.96737 1.22143 1.01562 0.79863 0.97991 1.48711 1.57537 1.06869 1.21577 1.20582 0.79077 0.82669 0.85558 1.90661 1.59114 1.25238 1.70509 1.21648 0.97256 1.03409 0.90643 0.88190 1.21405 0.96125 0.96719 0.99589 1.21922 0.97736 1.04313 0.92328 1.22052 0.87549 0.92331 0.99950 1.47190 1.37016 1.34373 1.17482 1.16123 0.82305 0.80378 0.81144 1.42919 1.36370 1.37534 1.24834 1.90977 1.33001 1.48356 1.80399 1.21044 0.92353 1.02673 0.81637 1.22273 0.95583 0.97820 0.84962 0.98365 0.96116 0.95640 0.94697 0.92364 0.92489 0.92666 0.90665 0.89350 0.92085 0.91132 0.91118 0.90870 0.87170 0.87065 0.89863 0.75292 0.74664 0.91137 0.91241 0.90152 0.91342 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 8.86 9.00 127.77 1.15 10.01 16 2 N -0.61 -29.76 2.87 -726.92 -2.09 -31.85 16 3 C -0.24 -12.61 8.74 84.04 0.73 -11.88 16 4 H 0.07 3.72 7.84 -2.91 -0.02 3.70 16 5 C -0.05 -2.95 5.15 84.86 0.44 -2.51 16 6 N -0.94 -55.51 10.51 21.65 0.23 -55.28 16 7 Si 0.96 44.58 29.56 68.60 2.03 46.60 16 8 H -0.29 -13.47 7.11 99.48 0.71 -12.77 16 9 H -0.30 -14.35 7.11 99.48 0.71 -13.64 16 10 H -0.26 -11.50 7.11 99.48 0.71 -10.79 16 11 C 0.16 6.15 5.26 86.38 0.45 6.61 16 12 C -0.11 -3.85 3.30 -9.32 -0.03 -3.88 16 13 H 0.05 2.07 8.14 -2.39 -0.02 2.05 16 14 C -0.10 -3.46 5.39 31.78 0.17 -3.28 16 15 C 0.11 3.05 6.17 86.73 0.53 3.58 16 16 N -0.61 -18.04 3.33 -811.38 -2.70 -20.74 16 17 C 0.53 15.14 6.86 87.66 0.60 15.74 16 18 O -0.58 -19.70 16.51 -3.04 -0.05 -19.75 16 19 C -0.11 -2.24 2.29 -11.46 -0.03 -2.27 16 20 H 0.10 1.97 6.99 -2.39 -0.02 1.96 16 21 C -0.10 -1.54 4.79 30.62 0.15 -1.39 16 22 C -0.12 -0.97 6.08 30.67 0.19 -0.78 16 23 C 0.10 0.81 6.43 86.36 0.56 1.37 16 24 N -0.62 -10.95 2.97 -836.90 -2.49 -13.43 16 25 C 0.70 15.21 8.57 179.05 1.53 16.75 16 26 N -0.84 -9.16 8.79 -184.74 -1.62 -10.79 16 27 O -0.65 -21.74 16.61 -4.00 -0.07 -21.80 16 28 C 0.15 3.39 5.68 86.36 0.49 3.88 16 29 C 0.12 3.55 6.42 86.93 0.56 4.11 16 30 H 0.00 -0.11 7.46 -2.39 -0.02 -0.13 16 31 H 0.02 1.10 7.10 -2.38 -0.02 1.09 16 32 H 0.03 1.08 7.85 -2.39 -0.02 1.06 16 33 H 0.24 14.19 8.31 -92.71 -0.77 13.42 16 34 H 0.06 2.09 8.00 -2.39 -0.02 2.07 16 35 H 0.06 1.98 7.87 -2.39 -0.02 1.96 16 36 H 0.05 2.36 8.14 -2.38 -0.02 2.34 16 37 H 0.07 2.60 8.01 -2.38 -0.02 2.58 16 38 H 0.09 2.08 7.73 -2.38 -0.02 2.06 16 39 H 0.06 1.83 8.11 -2.39 -0.02 1.81 16 40 H 0.07 1.23 7.90 -2.39 -0.02 1.21 16 41 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 42 H 0.07 0.58 8.14 -2.39 -0.02 0.56 16 43 H 0.11 0.32 8.14 -2.39 -0.02 0.30 16 44 H 0.11 0.14 5.56 -2.38 -0.01 0.12 16 45 H 0.08 0.57 8.14 -2.39 -0.02 0.55 16 46 H 0.41 1.28 6.29 -92.71 -0.58 0.70 16 47 H 0.42 3.99 8.93 -92.71 -0.83 3.16 16 48 H 0.07 2.05 7.00 -2.39 -0.02 2.04 16 49 H 0.07 1.64 8.14 -2.39 -0.02 1.62 16 50 H 0.08 2.23 8.03 -2.39 -0.02 2.21 16 51 H 0.07 2.15 7.99 -2.39 -0.02 2.13 16 Total: -1.00 -76.80 396.59 0.27 -76.53 By element: Atomic # 1 Polarization: 14.94 SS G_CDS: -0.47 Total: 14.47 kcal Atomic # 6 Polarization: 28.54 SS G_CDS: 7.50 Total: 36.04 kcal Atomic # 7 Polarization: -123.42 SS G_CDS: -8.67 Total: -132.09 kcal Atomic # 8 Polarization: -41.44 SS G_CDS: -0.12 Total: -41.56 kcal Atomic # 14 Polarization: 44.58 SS G_CDS: 2.03 Total: 46.60 kcal Total: -76.80 0.27 -76.53 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732073788.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.631 kcal (2) G-P(sol) polarization free energy of solvation -76.799 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.168 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.266 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.534 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.902 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds