Wall clock time and date at job start Tue Mar 31 2020 21:13:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86807 * 119.99850 * 2 1 4 4 H 1.48496 * 109.47140 * 90.00064 * 3 2 1 5 5 H 1.48495 * 109.47019 * 209.99946 * 3 2 1 6 6 H 1.48494 * 109.47049 * 330.00193 * 3 2 1 7 7 C 1.38806 * 120.00121 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00071 * 150.71855 * 7 2 1 9 9 N 1.36938 * 120.00062 * 330.71806 * 7 2 1 10 10 C 1.47420 * 125.64663 * 345.34881 * 9 7 2 11 11 C 1.54910 * 104.83278 * 204.08974 * 10 9 7 12 12 C 1.55154 * 101.58159 * 322.99043 * 11 10 9 13 13 H 1.09002 * 110.71992 * 277.13677 * 12 11 10 14 14 C 1.53000 * 110.72565 * 154.04028 * 12 11 10 15 15 C 1.53035 * 109.46456 * 180.02562 * 14 12 11 16 16 C 1.53193 * 109.31534 * 178.60321 * 15 14 12 17 17 N 1.46923 * 108.76590 * 54.65646 * 16 15 14 18 18 C 1.34766 * 120.63409 * 126.36412 * 17 16 15 19 19 O 1.21282 * 120.00778 * 175.70843 * 18 17 16 20 20 C 1.50702 * 119.99889 * 355.70764 * 18 17 16 21 21 C 1.53001 * 115.55137 * 294.41229 * 20 18 17 22 22 C 1.52997 * 109.47323 * 300.31247 * 21 20 18 23 23 F 1.39900 * 109.47338 * 185.45550 * 22 21 20 24 24 C 1.53002 * 117.50287 * 148.74229 * 20 18 17 25 25 C 1.53007 * 117.50028 * 80.08219 * 20 18 17 26 26 C 1.46930 * 118.73769 * 306.38309 * 17 16 15 27 27 C 1.53043 * 109.45447 * 59.97222 * 14 12 11 28 28 C 1.47019 * 125.65056 * 165.03406 * 9 7 2 29 29 H 0.97007 * 120.00141 * 175.84791 * 1 2 3 30 30 H 1.09002 * 110.36645 * 322.92355 * 10 9 7 31 31 H 1.08996 * 110.37211 * 85.14365 * 10 9 7 32 32 H 1.09004 * 111.00614 * 81.06216 * 11 10 9 33 33 H 1.09004 * 111.00978 * 204.87896 * 11 10 9 34 34 H 1.08997 * 109.45843 * 300.00595 * 14 12 11 35 35 H 1.09003 * 109.49820 * 298.56871 * 15 14 12 36 36 H 1.09000 * 109.49730 * 58.66598 * 15 14 12 37 37 H 1.08999 * 109.59500 * 294.87012 * 16 15 14 38 38 H 1.08999 * 109.70148 * 174.50989 * 16 15 14 39 39 H 1.09002 * 109.47001 * 60.30911 * 21 20 18 40 40 H 1.09001 * 109.47202 * 180.30676 * 21 20 18 41 41 H 1.09007 * 109.46801 * 305.45299 * 22 21 20 42 42 H 1.08992 * 109.47311 * 65.44913 * 22 21 20 43 43 H 1.09004 * 117.49191 * 359.97438 * 24 20 18 44 44 H 1.09000 * 117.49979 * 145.02171 * 24 20 18 45 45 H 1.08993 * 117.49858 * 214.98507 * 25 20 18 46 46 H 1.08997 * 117.49430 * 359.97438 * 25 20 18 47 47 H 1.08998 * 109.58999 * 293.82296 * 26 17 16 48 48 H 1.08998 * 109.70211 * 173.46279 * 26 17 16 49 49 H 1.09005 * 109.49870 * 301.33370 * 27 14 12 50 50 H 1.08990 * 109.49804 * 61.40698 * 27 14 12 51 51 H 1.09004 * 109.88431 * 298.40148 * 28 9 7 52 52 H 1.09003 * 109.87822 * 59.56340 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0465 1.4000 5 1 3.5477 1.4403 -0.7000 6 1 1.4476 2.6527 -0.7000 7 6 2.0102 -1.2021 -0.0005 8 1 2.9868 -1.2616 -0.4580 9 7 1.4568 -2.3125 0.5790 10 6 0.2983 -2.3188 1.4907 11 6 0.4531 -3.6183 2.3196 12 6 1.0142 -4.6003 1.2575 13 1 0.2074 -5.0228 0.6585 14 6 1.8296 -5.7104 1.9236 15 6 2.3688 -6.6603 0.8518 16 6 3.2134 -7.7503 1.5193 17 7 2.4046 -8.4068 2.5554 18 6 2.2527 -9.7459 2.5621 19 8 1.6481 -10.2832 3.4657 20 6 2.8343 -10.5758 1.4466 21 6 2.2189 -10.3477 0.0645 22 6 0.7235 -10.6674 0.1130 23 9 0.1857 -10.5794 -1.1755 24 6 3.2977 -11.9933 1.7883 25 6 4.3289 -10.8968 1.5102 26 6 1.7642 -7.5757 3.5839 27 6 0.9360 -6.4875 2.8932 28 6 1.9155 -3.6965 0.3900 29 1 -0.4851 -0.8379 -0.0608 30 1 0.3250 -1.4467 2.1440 31 1 -0.6316 -2.3380 0.9224 32 1 1.1619 -3.4790 3.1359 33 1 -0.5115 -3.9587 2.6963 34 1 2.6628 -5.2701 2.4713 35 1 1.5354 -7.1200 0.3204 36 1 2.9861 -6.1020 0.1481 37 1 4.0961 -7.3012 1.9747 38 1 3.5200 -8.4850 0.7748 39 1 2.3585 -9.3070 -0.2281 40 1 2.7062 -10.9979 -0.6620 41 1 0.5801 -11.6770 0.4983 42 1 0.2204 -9.9545 0.7662 43 1 3.1824 -12.3254 2.8201 44 1 3.1645 -12.7633 1.0283 45 1 4.8737 -10.9457 0.5674 46 1 4.8916 -10.5073 2.3585 47 1 2.5287 -7.1124 4.2076 48 1 1.1128 -8.1932 4.2023 49 1 0.5334 -5.8060 3.6427 50 1 0.1161 -6.9482 2.3424 51 1 1.8250 -3.9770 -0.6594 52 1 2.9523 -3.7907 0.7130 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001733265948.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:13:19 Heat of formation + Delta-G solvation = -72.483762 kcal Electronic energy + Delta-G solvation = -30871.822991 eV Core-core repulsion = 26785.401868 eV Total energy + Delta-G solvation = -4086.421122 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -48.66077 -41.74412 -40.11818 -38.40312 -37.74247 -35.42621 -33.51718 -32.49568 -32.00117 -30.93207 -29.44874 -27.00635 -25.83170 -25.13207 -24.20457 -23.53106 -23.16408 -21.89620 -21.54595 -20.89204 -19.63059 -19.56349 -18.00266 -17.49813 -17.20551 -16.79922 -16.53857 -16.44183 -16.12803 -15.83418 -15.72292 -15.51838 -15.22973 -15.04313 -14.81667 -14.76121 -14.35277 -14.15629 -13.80539 -13.67901 -13.43706 -13.29360 -13.14298 -12.70669 -12.61049 -12.56233 -12.45469 -12.41968 -12.29720 -12.20085 -11.89517 -11.84980 -11.84633 -11.59997 -11.50353 -11.45474 -11.30836 -11.17795 -11.03783 -10.68240 -10.49594 -9.69605 -9.01130 -8.37159 -5.32363 1.45977 1.56129 1.64337 1.81871 1.91005 2.62330 2.63692 3.17514 3.29898 3.43819 3.51763 3.59048 3.66528 3.71306 3.74905 3.83096 3.93446 4.02073 4.06942 4.10071 4.15962 4.22879 4.33416 4.38617 4.39899 4.44981 4.50758 4.52910 4.68723 4.72008 4.74336 4.82440 4.84526 4.86850 4.89876 4.91191 4.94284 4.98108 5.01675 5.03341 5.10318 5.16196 5.20190 5.22607 5.28600 5.34532 5.53129 5.56241 5.66868 6.30495 6.35297 6.90902 7.08055 7.71330 8.30837 8.97818 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.019143 B = 0.002473 C = 0.002418 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1462.305273 B =11320.662216 C =11577.804115 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.948 5.948 2 C -0.083 4.083 3 Si 1.119 2.881 4 H -0.284 1.284 5 H -0.270 1.270 6 H -0.294 1.294 7 C -0.347 4.347 8 H 0.061 0.939 9 N -0.629 5.629 10 C 0.144 3.856 11 C -0.112 4.112 12 C -0.077 4.077 13 H 0.068 0.932 14 C -0.063 4.063 15 C -0.129 4.129 16 C 0.107 3.893 17 N -0.601 5.601 18 C 0.546 3.454 19 O -0.582 6.582 20 C -0.171 4.171 21 C -0.105 4.105 22 C 0.060 3.940 23 F -0.230 7.230 24 C -0.144 4.144 25 C -0.135 4.135 26 C 0.113 3.887 27 C -0.120 4.120 28 C 0.140 3.860 29 H 0.255 0.745 30 H 0.015 0.985 31 H -0.002 1.002 32 H 0.074 0.926 33 H 0.086 0.914 34 H 0.076 0.924 35 H 0.063 0.937 36 H 0.081 0.919 37 H 0.084 0.916 38 H 0.110 0.890 39 H 0.089 0.911 40 H 0.109 0.891 41 H 0.086 0.914 42 H 0.058 0.942 43 H 0.089 0.911 44 H 0.124 0.876 45 H 0.132 0.868 46 H 0.099 0.901 47 H 0.080 0.920 48 H 0.078 0.922 49 H 0.084 0.916 50 H 0.059 0.941 51 H 0.009 0.991 52 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.217 -25.554 4.260 27.497 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.591 5.591 2 C -0.278 4.278 3 Si 0.943 3.057 4 H -0.211 1.211 5 H -0.195 1.195 6 H -0.221 1.221 7 C -0.476 4.476 8 H 0.079 0.921 9 N -0.356 5.356 10 C 0.018 3.982 11 C -0.151 4.151 12 C -0.096 4.096 13 H 0.086 0.914 14 C -0.082 4.082 15 C -0.167 4.167 16 C -0.015 4.015 17 N -0.333 5.333 18 C 0.335 3.665 19 O -0.462 6.462 20 C -0.174 4.174 21 C -0.143 4.143 22 C 0.005 3.995 23 F -0.211 7.211 24 C -0.182 4.182 25 C -0.172 4.172 26 C -0.010 4.010 27 C -0.158 4.158 28 C 0.015 3.985 29 H 0.065 0.935 30 H 0.033 0.967 31 H 0.015 0.985 32 H 0.093 0.907 33 H 0.104 0.896 34 H 0.094 0.906 35 H 0.082 0.918 36 H 0.099 0.901 37 H 0.102 0.898 38 H 0.128 0.872 39 H 0.108 0.892 40 H 0.127 0.873 41 H 0.105 0.895 42 H 0.076 0.924 43 H 0.107 0.893 44 H 0.142 0.858 45 H 0.150 0.850 46 H 0.117 0.883 47 H 0.098 0.902 48 H 0.097 0.903 49 H 0.103 0.897 50 H 0.077 0.923 51 H 0.027 0.973 52 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges 8.797 -24.107 4.700 26.089 hybrid contribution -0.558 -1.042 -0.296 1.219 sum 8.239 -25.149 4.403 26.828 Atomic orbital electron populations 1.70885 1.07719 1.29359 1.51172 1.27173 0.96494 1.04615 0.99520 0.82794 0.74094 0.71745 0.77021 1.21105 1.19457 1.22064 1.20053 1.00393 0.89793 1.37322 0.92093 1.44934 1.35654 1.02693 1.52362 1.21455 0.89242 0.96501 0.90953 1.22749 1.01513 0.93684 0.97106 1.22072 0.97338 0.94346 0.95857 0.91385 1.21011 0.97475 0.93713 0.95957 1.21974 1.00318 0.96523 0.97901 1.22027 0.93273 0.95767 0.90441 1.48165 1.50114 1.05544 1.29459 1.20006 0.78703 0.82088 0.85717 1.90673 1.44288 1.72278 1.38945 1.21209 1.00934 1.00809 0.94495 1.21768 0.93819 1.04886 0.93825 1.22020 0.94487 1.03766 0.79235 1.92754 1.87951 1.98000 1.42415 1.23138 1.01173 0.90257 1.03599 1.23261 0.88116 1.00550 1.05285 1.21620 0.97078 0.92120 0.90148 1.21892 0.97867 0.96990 0.99016 1.21494 0.96821 0.83912 0.96242 0.93503 0.96685 0.98468 0.90700 0.89578 0.90564 0.91844 0.90084 0.89823 0.87249 0.89238 0.87300 0.89542 0.92390 0.89285 0.85770 0.84962 0.88295 0.90226 0.90319 0.89744 0.92264 0.97344 0.94796 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.96 12.93 21.65 0.28 -59.68 16 2 C -0.08 -4.86 5.05 84.86 0.43 -4.43 16 3 Si 1.12 52.11 30.01 68.60 2.06 54.17 16 4 H -0.28 -12.70 7.11 99.48 0.71 -12.00 16 5 H -0.27 -11.42 7.11 99.48 0.71 -10.71 16 6 H -0.29 -13.78 7.11 99.48 0.71 -13.08 16 7 C -0.35 -20.12 10.02 84.03 0.84 -19.28 16 8 H 0.06 3.50 7.98 -2.91 -0.02 3.47 16 9 N -0.63 -32.61 3.31 -691.99 -2.29 -34.90 16 10 C 0.14 6.91 5.27 86.86 0.46 7.37 16 11 C -0.11 -3.78 5.37 31.99 0.17 -3.61 16 12 C -0.08 -2.35 2.47 -9.60 -0.02 -2.38 16 13 H 0.07 2.12 8.14 -2.39 -0.02 2.10 16 14 C -0.06 -1.37 1.57 -10.77 -0.02 -1.39 16 15 C -0.13 -2.35 5.17 30.67 0.16 -2.19 16 16 C 0.11 1.49 5.75 86.36 0.50 1.99 16 17 N -0.60 -10.75 2.97 -818.90 -2.43 -13.19 16 18 C 0.55 11.03 6.22 87.66 0.55 11.57 16 19 O -0.58 -16.33 16.13 -3.04 -0.05 -16.38 16 20 C -0.17 -2.26 0.82 -52.92 -0.04 -2.30 16 21 C -0.11 -1.25 5.20 30.59 0.16 -1.09 16 22 C 0.06 0.98 7.27 71.98 0.52 1.51 16 23 F -0.23 -4.88 17.36 44.97 0.78 -4.10 16 24 C -0.14 -1.59 9.77 30.62 0.30 -1.29 16 25 C -0.14 -1.13 9.47 30.62 0.29 -0.84 16 26 C 0.11 2.12 6.42 86.37 0.55 2.68 16 27 C -0.12 -2.34 5.16 30.68 0.16 -2.18 16 28 C 0.14 5.60 5.99 86.73 0.52 6.12 16 29 H 0.25 16.37 5.98 -92.70 -0.55 15.81 16 30 H 0.01 0.79 7.86 -2.39 -0.02 0.78 16 31 H 0.00 -0.13 6.83 -2.39 -0.02 -0.14 16 32 H 0.07 2.38 8.05 -2.38 -0.02 2.36 16 33 H 0.09 2.48 8.08 -2.39 -0.02 2.46 16 34 H 0.08 1.70 8.08 -2.39 -0.02 1.68 16 35 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 36 H 0.08 1.53 7.45 -2.39 -0.02 1.51 16 37 H 0.08 1.03 8.14 -2.39 -0.02 1.02 16 38 H 0.11 1.14 4.30 -2.39 -0.01 1.13 16 39 H 0.09 1.06 5.95 -2.39 -0.01 1.05 16 40 H 0.11 0.87 8.11 -2.39 -0.02 0.85 16 41 H 0.09 1.25 8.14 -2.38 -0.02 1.23 16 42 H 0.06 1.11 7.74 -2.39 -0.02 1.09 16 43 H 0.09 1.31 8.00 -2.39 -0.02 1.29 16 44 H 0.12 0.87 8.14 -2.39 -0.02 0.85 16 45 H 0.13 0.49 8.14 -2.39 -0.02 0.47 16 46 H 0.10 0.91 8.14 -2.39 -0.02 0.89 16 47 H 0.08 1.33 8.14 -2.39 -0.02 1.32 16 48 H 0.08 1.71 7.04 -2.39 -0.02 1.69 16 49 H 0.08 1.60 7.19 -2.38 -0.02 1.58 16 50 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 51 H 0.01 0.36 8.14 -2.39 -0.02 0.34 16 52 H 0.03 1.30 7.77 -2.39 -0.02 1.28 16 Total: -1.00 -76.04 398.84 4.97 -71.07 By element: Atomic # 1 Polarization: 11.64 SS G_CDS: 1.10 Total: 12.75 kcal Atomic # 6 Polarization: -15.26 SS G_CDS: 5.52 Total: -9.74 kcal Atomic # 7 Polarization: -103.32 SS G_CDS: -4.44 Total: -107.77 kcal Atomic # 8 Polarization: -16.33 SS G_CDS: -0.05 Total: -16.38 kcal Atomic # 9 Polarization: -4.88 SS G_CDS: 0.78 Total: -4.10 kcal Atomic # 14 Polarization: 52.11 SS G_CDS: 2.06 Total: 54.17 kcal Total: -76.04 4.97 -71.07 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733265948.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.416 kcal (2) G-P(sol) polarization free energy of solvation -76.039 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.454 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.971 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.068 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.484 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds