Wall clock time and date at job start Tue Mar 31 2020 21:13:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86807 * 119.99716 * 2 1 4 4 H 1.48499 * 109.47191 * 240.00301 * 3 2 1 5 5 H 1.48500 * 109.46851 * 0.02562 * 3 2 1 6 6 H 1.48507 * 109.46699 * 120.00531 * 3 2 1 7 7 C 1.38808 * 120.00225 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99829 * 209.82190 * 7 2 1 9 9 N 1.36936 * 120.00204 * 29.81661 * 7 2 1 10 10 C 1.47427 * 125.64838 * 9.62128 * 9 7 2 11 11 C 1.55122 * 104.72430 * 155.81625 * 10 9 7 12 12 C 1.55158 * 101.48686 * 37.29529 * 11 10 9 13 13 H 1.09004 * 110.72061 * 82.69273 * 12 11 10 14 14 C 1.52998 * 110.87400 * 205.89769 * 12 11 10 15 15 C 1.53039 * 109.46201 * 295.13174 * 14 12 11 16 16 C 1.53192 * 109.31433 * 178.61365 * 15 14 12 17 17 N 1.46921 * 108.77337 * 54.63392 * 16 15 14 18 18 C 1.34781 * 120.62919 * 126.37075 * 17 16 15 19 19 O 1.21276 * 120.00074 * 175.57078 * 18 17 16 20 20 C 1.50698 * 119.99911 * 355.56462 * 18 17 16 21 21 C 1.53004 * 115.55466 * 293.36966 * 20 18 17 22 22 C 1.52999 * 109.46682 * 302.41576 * 21 20 18 23 23 F 1.39901 * 109.46802 * 183.91914 * 22 21 20 24 24 C 1.53003 * 117.49653 * 147.69697 * 20 18 17 25 25 C 1.53003 * 117.49962 * 79.04061 * 20 18 17 26 26 C 1.46923 * 118.74143 * 306.39170 * 17 16 15 27 27 C 1.53043 * 109.45965 * 175.06495 * 14 12 11 28 28 C 1.47019 * 125.65219 * 189.92652 * 9 7 2 29 29 H 0.97007 * 119.99929 * 185.91325 * 1 2 3 30 30 H 1.08998 * 110.36466 * 274.74731 * 10 9 7 31 31 H 1.09006 * 110.36705 * 37.06469 * 10 9 7 32 32 H 1.09003 * 111.19691 * 279.19196 * 11 10 9 33 33 H 1.08996 * 110.90859 * 155.27390 * 11 10 9 34 34 H 1.09001 * 109.46023 * 55.09163 * 14 12 11 35 35 H 1.08998 * 109.49793 * 298.56885 * 15 14 12 36 36 H 1.09007 * 109.49481 * 58.66326 * 15 14 12 37 37 H 1.08993 * 109.58480 * 294.84987 * 16 15 14 38 38 H 1.08996 * 109.69988 * 174.49246 * 16 15 14 39 39 H 1.09002 * 109.46692 * 62.40886 * 21 20 18 40 40 H 1.08997 * 109.47124 * 182.41201 * 21 20 18 41 41 H 1.09000 * 109.47153 * 303.91205 * 22 21 20 42 42 H 1.08990 * 109.47736 * 63.91946 * 22 21 20 43 43 H 1.08993 * 117.50259 * 0.02562 * 24 20 18 44 44 H 1.09003 * 117.49614 * 145.02462 * 24 20 18 45 45 H 1.08996 * 117.50126 * 214.98485 * 25 20 18 46 46 H 1.09007 * 117.49202 * 359.97053 * 25 20 18 47 47 H 1.08995 * 109.58584 * 293.82301 * 26 17 16 48 48 H 1.09005 * 109.70529 * 173.46269 * 26 17 16 49 49 H 1.09000 * 109.49273 * 301.33645 * 27 14 12 50 50 H 1.08996 * 109.49918 * 61.40071 * 27 14 12 51 51 H 1.09003 * 109.88402 * 300.44757 * 28 9 7 52 52 H 1.09011 * 109.87844 * 61.45069 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1038 1.6966 -1.2125 5 1 1.2850 2.7465 0.0006 6 1 3.1040 1.6964 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 2.9830 -1.2642 0.4646 9 7 1.4616 -2.3093 -0.5907 10 6 0.2483 -2.3244 -1.4281 11 6 0.4009 -3.5840 -2.3205 12 6 1.0581 -4.5844 -1.3332 13 1 0.3036 -5.0586 -0.7054 14 6 1.8729 -5.6379 -2.0863 15 6 0.9348 -6.4923 -2.9420 16 6 1.7577 -7.5232 -3.7209 17 7 2.5751 -8.2907 -2.7715 18 6 2.5264 -9.6375 -2.7556 19 8 3.2643 -10.2624 -2.0236 20 6 1.5550 -10.3669 -3.6474 21 6 0.0750 -10.1652 -3.3156 22 6 -0.1869 -10.5956 -1.8710 23 9 -1.5549 -10.4957 -1.5955 24 6 1.9787 -11.7362 -4.1828 25 6 1.9329 -10.5278 -5.1213 26 6 3.4463 -7.5621 -1.8394 27 6 2.6045 -6.5308 -1.0815 28 6 1.9813 -3.6808 -0.4890 29 1 -0.4850 -0.8356 0.0866 30 1 -0.6420 -2.4040 -0.8044 31 1 0.2016 -1.4266 -2.0445 32 1 1.0543 -3.3879 -3.1706 33 1 -0.5722 -3.9454 -2.6529 34 1 2.6006 -5.1428 -2.7293 35 1 0.2224 -7.0072 -2.2975 36 1 0.3968 -5.8525 -3.6416 37 1 2.4067 -7.0113 -4.4313 38 1 1.0897 -8.1977 -4.2565 39 1 -0.1835 -9.1129 -3.4337 40 1 -0.5339 -10.7669 -3.9903 41 1 0.1366 -11.6276 -1.7351 42 1 0.3685 -9.9484 -1.1925 43 1 2.9598 -12.1096 -3.8896 44 1 1.2030 -12.4931 -4.2989 45 1 1.1273 -10.4902 -5.8545 46 1 2.8840 -10.1056 -5.4459 47 1 4.2331 -7.0534 -2.3964 48 1 3.8928 -8.2605 -1.1315 49 1 3.2549 -5.9184 -0.4569 50 1 1.8764 -7.0449 -0.4541 51 1 2.9982 -3.7218 -0.8794 52 1 1.9706 -4.0050 0.5517 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001733265949.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:13:23 Heat of formation + Delta-G solvation = -71.557806 kcal Electronic energy + Delta-G solvation = -30866.799612 eV Core-core repulsion = 26780.418642 eV Total energy + Delta-G solvation = -4086.380970 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -48.65326 -41.74198 -40.12007 -38.40133 -37.74217 -35.43287 -33.51678 -32.49470 -32.01913 -30.88722 -29.49702 -26.84479 -26.04834 -25.03123 -24.20212 -23.52421 -23.16374 -21.90580 -21.53947 -20.87008 -19.64916 -19.58247 -17.99766 -17.47478 -17.21405 -16.78831 -16.57838 -16.43427 -16.10666 -15.83673 -15.69629 -15.51664 -15.23054 -15.00701 -14.82672 -14.67152 -14.45665 -14.13570 -13.78970 -13.68989 -13.47169 -13.27766 -13.14415 -12.71360 -12.60468 -12.55373 -12.44199 -12.40446 -12.30917 -12.19431 -11.91599 -11.85558 -11.82914 -11.59110 -11.49685 -11.45983 -11.31574 -11.15541 -11.02600 -10.68704 -10.50515 -9.69618 -9.04342 -8.37693 -5.29715 1.46357 1.55392 1.63458 1.82865 1.90726 2.62909 2.63433 3.15319 3.30481 3.44877 3.50770 3.60221 3.67326 3.72105 3.75679 3.82616 3.94107 4.02239 4.06951 4.10470 4.17136 4.22584 4.34562 4.37079 4.40725 4.46191 4.50466 4.54308 4.69149 4.72501 4.75332 4.81474 4.85140 4.87017 4.88528 4.92621 4.96352 4.99196 5.02006 5.04248 5.10872 5.14933 5.21121 5.25238 5.28725 5.36114 5.53306 5.55856 5.63671 6.29626 6.36467 6.89512 7.08267 7.71229 8.29243 8.97050 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.021182 B = 0.002451 C = 0.002352 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1321.530086 B =11422.573002 C =11903.088360 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.947 5.947 2 C -0.080 4.080 3 Si 1.114 2.886 4 H -0.279 1.279 5 H -0.290 1.290 6 H -0.276 1.276 7 C -0.350 4.350 8 H 0.060 0.940 9 N -0.631 5.631 10 C 0.143 3.857 11 C -0.109 4.109 12 C -0.077 4.077 13 H 0.069 0.931 14 C -0.063 4.063 15 C -0.125 4.125 16 C 0.104 3.896 17 N -0.601 5.601 18 C 0.544 3.456 19 O -0.584 6.584 20 C -0.170 4.170 21 C -0.103 4.103 22 C 0.059 3.941 23 F -0.229 7.229 24 C -0.147 4.147 25 C -0.133 4.133 26 C 0.115 3.885 27 C -0.123 4.123 28 C 0.139 3.861 29 H 0.255 0.745 30 H -0.003 1.003 31 H 0.019 0.981 32 H 0.076 0.924 33 H 0.093 0.907 34 H 0.076 0.924 35 H 0.064 0.936 36 H 0.096 0.904 37 H 0.085 0.915 38 H 0.112 0.888 39 H 0.093 0.907 40 H 0.110 0.890 41 H 0.084 0.916 42 H 0.055 0.945 43 H 0.086 0.914 44 H 0.125 0.875 45 H 0.135 0.865 46 H 0.098 0.902 47 H 0.078 0.922 48 H 0.074 0.926 49 H 0.069 0.931 50 H 0.057 0.943 51 H 0.030 0.970 52 H 0.003 0.997 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.534 -24.610 -14.914 28.817 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.590 5.590 2 C -0.275 4.275 3 Si 0.938 3.062 4 H -0.206 1.206 5 H -0.216 1.216 6 H -0.202 1.202 7 C -0.479 4.479 8 H 0.078 0.922 9 N -0.358 5.358 10 C 0.017 3.983 11 C -0.147 4.147 12 C -0.096 4.096 13 H 0.087 0.913 14 C -0.081 4.081 15 C -0.163 4.163 16 C -0.017 4.017 17 N -0.333 5.333 18 C 0.334 3.666 19 O -0.464 6.464 20 C -0.174 4.174 21 C -0.141 4.141 22 C 0.004 3.996 23 F -0.210 7.210 24 C -0.184 4.184 25 C -0.170 4.170 26 C -0.007 4.007 27 C -0.162 4.162 28 C 0.014 3.986 29 H 0.065 0.935 30 H 0.015 0.985 31 H 0.037 0.963 32 H 0.095 0.905 33 H 0.111 0.889 34 H 0.095 0.905 35 H 0.083 0.917 36 H 0.114 0.886 37 H 0.103 0.897 38 H 0.130 0.870 39 H 0.111 0.889 40 H 0.129 0.871 41 H 0.103 0.897 42 H 0.074 0.926 43 H 0.105 0.895 44 H 0.143 0.857 45 H 0.153 0.847 46 H 0.117 0.883 47 H 0.097 0.903 48 H 0.093 0.907 49 H 0.088 0.912 50 H 0.076 0.924 51 H 0.048 0.952 52 H 0.021 0.979 Dipole moment (debyes) X Y Z Total from point charges 1.799 -23.205 -14.533 27.439 hybrid contribution 0.169 -1.147 1.225 1.687 sum 1.968 -24.352 -13.308 27.821 Atomic orbital electron populations 1.70903 1.07644 1.29428 1.51017 1.27102 0.96490 1.04316 0.99641 0.82881 0.73932 0.72065 0.77329 1.20576 1.21620 1.20164 1.20040 1.00970 0.90119 1.36731 0.92226 1.44953 1.29963 1.03762 1.57118 1.21546 0.88222 0.96858 0.91628 1.22790 1.01470 0.93546 0.96931 1.22072 0.96834 0.94457 0.96228 0.91292 1.21019 0.96919 0.94085 0.96126 1.21972 0.97687 0.97333 0.99355 1.22087 0.94427 0.94375 0.90835 1.48176 1.43387 1.05197 1.36525 1.20077 0.82578 0.81877 0.82110 1.90676 1.44674 1.67540 1.43559 1.21203 0.94431 1.03306 0.98430 1.21751 0.91767 1.04702 0.95838 1.22016 0.76134 1.03529 0.97893 1.92753 1.35146 1.97910 1.95227 1.23144 1.03639 0.90419 1.01202 1.23269 1.04402 1.00088 0.89233 1.21543 0.92570 0.94045 0.92566 1.21902 0.99346 0.96899 0.98020 1.21488 0.96542 0.84257 0.96281 0.93460 0.98489 0.96289 0.90506 0.88885 0.90547 0.91742 0.88605 0.89688 0.86955 0.88886 0.87130 0.89744 0.92643 0.89518 0.85708 0.84692 0.88330 0.90337 0.90702 0.91213 0.92425 0.95213 0.97945 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.74 12.74 21.65 0.28 -59.46 16 2 C -0.08 -4.74 5.05 84.86 0.43 -4.31 16 3 Si 1.11 52.28 30.01 68.60 2.06 54.33 16 4 H -0.28 -12.33 7.11 99.48 0.71 -11.62 16 5 H -0.29 -13.75 7.11 99.48 0.71 -13.05 16 6 H -0.28 -12.04 7.11 99.48 0.71 -11.33 16 7 C -0.35 -20.60 10.03 84.03 0.84 -19.76 16 8 H 0.06 3.49 7.98 -2.91 -0.02 3.47 16 9 N -0.63 -33.08 3.35 -691.55 -2.32 -35.39 16 10 C 0.14 6.80 5.22 86.93 0.45 7.25 16 11 C -0.11 -3.53 5.62 32.06 0.18 -3.35 16 12 C -0.08 -2.35 2.48 -9.61 -0.02 -2.37 16 13 H 0.07 2.14 8.14 -2.39 -0.02 2.12 16 14 C -0.06 -1.37 1.53 -10.77 -0.02 -1.39 16 15 C -0.13 -1.96 5.21 30.67 0.16 -1.80 16 16 C 0.10 1.30 5.78 86.36 0.50 1.80 16 17 N -0.60 -10.82 2.97 -818.94 -2.43 -13.25 16 18 C 0.54 11.08 6.08 87.66 0.53 11.61 16 19 O -0.58 -16.87 16.16 -3.02 -0.05 -16.92 16 20 C -0.17 -2.14 0.84 -52.93 -0.04 -2.19 16 21 C -0.10 -1.11 5.24 30.60 0.16 -0.95 16 22 C 0.06 0.95 7.27 71.98 0.52 1.47 16 23 F -0.23 -4.70 17.36 44.97 0.78 -3.92 16 24 C -0.15 -1.56 9.76 30.62 0.30 -1.26 16 25 C -0.13 -0.99 9.39 30.62 0.29 -0.70 16 26 C 0.12 2.37 6.42 86.36 0.55 2.93 16 27 C -0.12 -2.76 5.17 30.67 0.16 -2.61 16 28 C 0.14 5.76 5.83 86.73 0.51 6.26 16 29 H 0.25 16.33 5.95 -92.70 -0.55 15.77 16 30 H 0.00 -0.13 6.96 -2.39 -0.02 -0.15 16 31 H 0.02 1.00 7.58 -2.38 -0.02 0.98 16 32 H 0.08 2.32 8.05 -2.39 -0.02 2.30 16 33 H 0.09 2.44 8.10 -2.39 -0.02 2.43 16 34 H 0.08 1.70 8.13 -2.39 -0.02 1.68 16 35 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 36 H 0.10 1.28 7.38 -2.38 -0.02 1.26 16 37 H 0.08 0.90 8.14 -2.39 -0.02 0.88 16 38 H 0.11 0.93 4.30 -2.39 -0.01 0.92 16 39 H 0.09 0.92 6.11 -2.39 -0.01 0.90 16 40 H 0.11 0.73 8.11 -2.39 -0.02 0.71 16 41 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 42 H 0.06 1.07 7.64 -2.39 -0.02 1.05 16 43 H 0.09 1.28 8.02 -2.39 -0.02 1.26 16 44 H 0.12 0.81 8.14 -2.39 -0.02 0.79 16 45 H 0.14 0.31 8.14 -2.39 -0.02 0.29 16 46 H 0.10 0.83 8.14 -2.38 -0.02 0.81 16 47 H 0.08 1.47 8.14 -2.39 -0.02 1.45 16 48 H 0.07 1.80 7.04 -2.38 -0.02 1.78 16 49 H 0.07 1.72 7.11 -2.39 -0.02 1.71 16 50 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 51 H 0.03 1.20 7.57 -2.39 -0.02 1.18 16 52 H 0.00 0.11 8.14 -2.38 -0.02 0.09 16 Total: -1.00 -77.57 398.25 4.92 -72.64 By element: Atomic # 1 Polarization: 10.21 SS G_CDS: 1.11 Total: 11.32 kcal Atomic # 6 Polarization: -14.85 SS G_CDS: 5.50 Total: -9.35 kcal Atomic # 7 Polarization: -103.63 SS G_CDS: -4.47 Total: -108.11 kcal Atomic # 8 Polarization: -16.87 SS G_CDS: -0.05 Total: -16.92 kcal Atomic # 9 Polarization: -4.70 SS G_CDS: 0.78 Total: -3.92 kcal Atomic # 14 Polarization: 52.28 SS G_CDS: 2.06 Total: 54.33 kcal Total: -77.57 4.92 -72.64 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733265949.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.087 kcal (2) G-P(sol) polarization free energy of solvation -77.570 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.483 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.925 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.645 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.558 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds