Wall clock time and date at job start Tue Mar 31 2020 21:48:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31612 * 1 3 3 Si 1.86796 * 120.00173 * 2 1 4 4 H 1.48504 * 109.47289 * 239.99665 * 3 2 1 5 5 H 1.48492 * 109.47289 * 359.97438 * 3 2 1 6 6 H 1.48506 * 109.47062 * 119.99983 * 3 2 1 7 7 C 1.38821 * 119.99742 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99701 * 179.97438 * 7 2 1 9 9 N 1.36936 * 119.99920 * 0.02562 * 7 2 1 10 10 C 1.46501 * 119.99822 * 179.97438 * 9 7 2 11 11 C 1.52997 * 109.47012 * 179.97438 * 10 9 7 12 12 H 1.08998 * 109.47399 * 55.00303 * 11 10 9 13 13 C 1.53002 * 109.47369 * 175.00767 * 11 10 9 14 14 C 1.52997 * 109.47369 * 180.02562 * 13 11 10 15 15 C 1.52994 * 109.47404 * 300.00003 * 14 13 11 16 16 H 1.09008 * 109.46970 * 299.99951 * 15 14 13 17 17 C 1.52997 * 109.47404 * 180.02562 * 15 14 13 18 18 N 1.46505 * 109.47212 * 174.99693 * 17 15 14 19 19 C 1.34771 * 119.99622 * 179.97438 * 18 17 15 20 20 O 1.21280 * 120.00597 * 0.02562 * 19 18 17 21 21 C 1.50701 * 119.99622 * 179.97438 * 19 18 17 22 22 O 1.42900 * 109.47064 * 180.02562 * 21 19 18 23 23 C 1.42907 * 114.00024 * 180.02562 * 22 21 19 24 24 C 1.54267 * 110.03110 * 267.91262 * 23 22 21 25 25 C 1.54967 * 104.15670 * 217.13720 * 24 23 22 26 26 C 1.54881 * 102.77986 * 37.88870 * 25 24 23 27 27 C 1.53870 * 110.03206 * 150.69575 * 23 22 21 28 28 C 1.53001 * 109.47368 * 59.99530 * 15 14 13 29 29 C 1.52997 * 109.47242 * 300.00569 * 28 15 14 30 30 H 0.97002 * 119.99970 * 0.02562 * 1 2 3 31 31 H 0.97001 * 120.00297 * 0.02562 * 9 7 2 32 32 H 1.09002 * 109.46700 * 60.00562 * 10 9 7 33 33 H 1.08993 * 109.47771 * 300.00445 * 10 9 7 34 34 H 1.08995 * 109.46734 * 59.99464 * 13 11 10 35 35 H 1.09002 * 109.46264 * 300.00400 * 13 11 10 36 36 H 1.09000 * 109.46875 * 179.97438 * 14 13 11 37 37 H 1.09008 * 109.47017 * 59.99925 * 14 13 11 38 38 H 1.09002 * 109.47153 * 54.99686 * 17 15 14 39 39 H 1.09001 * 109.46832 * 294.99876 * 17 15 14 40 40 H 0.96996 * 119.99606 * 0.02562 * 18 17 15 41 41 H 1.09001 * 109.47380 * 300.00190 * 21 19 18 42 42 H 1.09002 * 109.47060 * 60.00278 * 21 19 18 43 43 H 1.09000 * 110.01213 * 29.30256 * 23 22 21 44 44 H 1.09002 * 110.49027 * 335.78083 * 24 23 22 45 45 H 1.08995 * 110.49161 * 98.42817 * 24 23 22 46 46 H 1.09001 * 110.71804 * 279.57147 * 25 24 23 47 47 H 1.09005 * 110.76373 * 156.22519 * 25 24 23 48 48 H 1.09004 * 110.48779 * 203.41051 * 26 25 24 49 49 H 1.08998 * 110.60246 * 80.81936 * 26 25 24 50 50 H 1.09007 * 110.02837 * 238.57113 * 27 23 22 51 51 H 1.08996 * 110.03383 * 359.97438 * 27 23 22 52 52 H 1.09008 * 109.46731 * 60.00275 * 28 15 14 53 53 H 1.08998 * 109.47430 * 180.02562 * 28 15 14 54 54 H 1.08998 * 109.46934 * 299.99660 * 29 28 15 55 55 H 1.09000 * 109.47325 * 179.97438 * 29 28 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 3.1040 1.6963 -1.2125 5 1 1.2853 2.7464 -0.0006 6 1 3.1039 1.6963 1.2125 7 6 2.0102 -1.2023 0.0005 8 1 3.0901 -1.2022 0.0001 9 7 1.3254 -2.3881 0.0005 10 6 2.0579 -3.6569 0.0005 11 6 1.0636 -4.8197 0.0012 12 1 0.3792 -4.7131 -0.8404 13 6 1.8243 -6.1413 -0.1243 14 6 0.8300 -7.3041 -0.1243 15 6 0.0351 -7.2955 1.1828 16 1 0.7191 -7.4024 2.0248 17 6 -0.9588 -8.4587 1.1831 18 7 -1.6353 -8.5227 2.4811 19 6 -2.5604 -9.4750 2.7124 20 8 -2.8327 -10.2793 1.8464 21 6 -3.2559 -9.5413 4.0477 22 8 -4.1842 -10.6276 4.0479 23 6 -4.9014 -10.7791 5.2747 24 6 -4.1577 -11.7607 6.2038 25 6 -5.2911 -12.5506 6.9058 26 6 -6.3364 -12.7266 5.7766 27 6 -6.2862 -11.3927 5.0033 28 6 -0.7256 -5.9740 1.3085 29 6 0.2687 -4.8111 1.3085 30 1 -0.4850 0.8401 -0.0004 31 1 0.3554 -2.3881 -0.0002 32 1 2.6845 -3.7146 0.8906 33 1 2.6846 -3.7147 -0.8893 34 1 2.5087 -6.2479 0.7172 35 1 2.3902 -6.1475 -1.0559 36 1 1.3719 -8.2456 -0.2142 37 1 0.1459 -7.1972 -0.9663 38 1 -0.4254 -9.3924 1.0050 39 1 -1.6970 -8.3060 0.3958 40 1 -1.4178 -7.8793 3.1735 41 1 -2.5175 -9.6947 4.8348 42 1 -3.7889 -8.6074 4.2265 43 1 -5.0111 -9.8116 5.7645 44 1 -3.5277 -12.4337 5.6221 45 1 -3.5615 -11.2158 6.9357 46 1 -5.7082 -11.9745 7.7319 47 1 -4.9300 -13.5189 7.2524 48 1 -7.3292 -12.8866 6.1972 49 1 -6.0610 -13.5559 5.1249 50 1 -7.0680 -10.7233 5.3624 51 1 -6.4114 -11.5745 3.9359 52 1 -1.4097 -5.8671 0.4666 53 1 -1.2916 -5.9676 2.2400 54 1 0.9527 -4.9180 2.1504 55 1 -0.2733 -3.8696 1.3976 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001733564671.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:48:34 Heat of formation + Delta-G solvation = -133.079349 kcal Electronic energy + Delta-G solvation = -28917.422082 eV Core-core repulsion = 24951.833642 eV Total energy + Delta-G solvation = -3965.588439 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -41.02657 -40.04901 -39.48734 -37.03226 -36.65194 -35.56242 -33.66943 -31.83257 -31.59253 -29.98456 -29.57591 -28.32826 -27.25917 -25.52497 -24.07897 -23.27342 -21.71392 -21.63533 -21.47668 -21.24818 -20.63142 -19.13740 -18.28720 -18.14485 -17.06891 -16.81585 -16.63702 -16.45621 -16.16826 -15.74112 -15.57012 -15.29344 -15.22404 -14.96128 -14.67755 -14.55693 -14.50504 -14.25487 -13.92015 -13.52810 -13.45296 -13.10226 -13.00054 -12.88403 -12.82411 -12.57728 -12.46900 -12.42763 -12.12470 -12.02717 -11.94512 -11.93705 -11.86431 -11.75116 -11.51880 -11.49483 -11.30519 -11.07841 -10.93143 -10.83739 -10.76029 -10.56050 -10.09973 -8.97378 -7.94385 -5.22547 1.46880 1.50003 1.56225 1.56600 1.84709 2.56681 3.01449 3.38711 3.62384 3.65594 3.67128 3.78910 3.79865 3.86177 3.99962 4.03814 4.20296 4.23527 4.27351 4.34546 4.35358 4.43846 4.53364 4.56979 4.57324 4.60380 4.64071 4.67978 4.74228 4.78437 4.79093 4.86668 4.95087 4.96227 5.02891 5.06323 5.11424 5.12930 5.21277 5.22381 5.25476 5.28042 5.31647 5.35020 5.39632 5.45082 5.46812 5.50526 5.61874 5.68752 6.18781 6.28118 6.55519 7.22163 7.34271 8.12347 8.35601 9.28953 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.018854 B = 0.001568 C = 0.001485 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1484.715998 B =17853.900871 C =18848.058803 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.969 5.969 2 C -0.075 4.075 3 Si 0.974 3.026 4 H -0.279 1.279 5 H -0.295 1.295 6 H -0.277 1.277 7 C -0.248 4.248 8 H 0.073 0.927 9 N -0.744 5.744 10 C 0.153 3.847 11 C -0.086 4.086 12 H 0.052 0.948 13 C -0.102 4.102 14 C -0.106 4.106 15 C -0.084 4.084 16 H 0.093 0.907 17 C 0.130 3.870 18 N -0.713 5.713 19 C 0.507 3.493 20 O -0.578 6.578 21 C 0.043 3.957 22 O -0.389 6.389 23 C 0.075 3.925 24 C -0.149 4.149 25 C -0.120 4.120 26 C -0.124 4.124 27 C -0.128 4.128 28 C -0.106 4.106 29 C -0.103 4.103 30 H 0.251 0.749 31 H 0.374 0.626 32 H 0.019 0.981 33 H 0.013 0.987 34 H 0.072 0.928 35 H 0.064 0.936 36 H 0.082 0.918 37 H 0.059 0.941 38 H 0.066 0.934 39 H 0.053 0.947 40 H 0.417 0.583 41 H 0.107 0.893 42 H 0.105 0.895 43 H 0.086 0.914 44 H 0.060 0.940 45 H 0.083 0.917 46 H 0.082 0.918 47 H 0.073 0.927 48 H 0.080 0.920 49 H 0.057 0.943 50 H 0.087 0.913 51 H 0.058 0.942 52 H 0.052 0.948 53 H 0.074 0.926 54 H 0.064 0.936 55 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.806 -26.044 15.066 31.084 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.620 5.620 2 C -0.268 4.268 3 Si 0.802 3.198 4 H -0.205 1.205 5 H -0.221 1.221 6 H -0.203 1.203 7 C -0.380 4.380 8 H 0.091 0.909 9 N -0.387 5.387 10 C 0.027 3.973 11 C -0.105 4.105 12 H 0.071 0.929 13 C -0.140 4.140 14 C -0.144 4.144 15 C -0.103 4.103 16 H 0.112 0.888 17 C 0.007 3.993 18 N -0.367 5.367 19 C 0.294 3.706 20 O -0.457 6.457 21 C -0.036 4.036 22 O -0.308 6.308 23 C 0.018 3.982 24 C -0.187 4.187 25 C -0.157 4.157 26 C -0.162 4.162 27 C -0.166 4.166 28 C -0.144 4.144 29 C -0.141 4.141 30 H 0.060 0.940 31 H 0.206 0.794 32 H 0.037 0.963 33 H 0.031 0.969 34 H 0.090 0.910 35 H 0.083 0.917 36 H 0.100 0.900 37 H 0.078 0.922 38 H 0.085 0.915 39 H 0.072 0.928 40 H 0.254 0.746 41 H 0.125 0.875 42 H 0.123 0.877 43 H 0.104 0.896 44 H 0.079 0.921 45 H 0.101 0.899 46 H 0.100 0.900 47 H 0.092 0.908 48 H 0.099 0.901 49 H 0.076 0.924 50 H 0.105 0.895 51 H 0.077 0.923 52 H 0.070 0.930 53 H 0.093 0.907 54 H 0.083 0.917 55 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -7.868 -26.638 14.285 31.233 hybrid contribution 0.142 1.749 -0.029 1.755 sum -7.725 -24.889 14.256 29.705 Atomic orbital electron populations 1.69809 1.06584 1.26088 1.59505 1.25559 0.96407 1.01060 1.03727 0.85211 0.77212 0.79151 0.78185 1.20521 1.22084 1.20300 1.19628 0.91472 0.85609 1.41311 0.90888 1.42593 1.05610 1.01171 1.89282 1.20887 0.94070 0.85180 0.97149 1.21240 0.96774 0.94450 0.98040 0.92927 1.21439 0.97664 0.92425 1.02452 1.21462 0.97708 0.98586 0.96647 1.21313 0.96339 0.92677 0.99924 0.88849 1.21354 0.94698 0.98707 0.84585 1.45835 1.40567 1.32918 1.17419 1.20875 0.79544 0.80402 0.89766 1.90711 1.64921 1.41904 1.48151 1.22386 0.94194 0.92591 0.94428 1.88063 1.55301 1.50421 1.37063 1.23127 0.91631 0.99452 0.83959 1.22938 0.98622 0.98618 0.98472 1.22456 0.95123 1.00580 0.97578 1.22350 1.00211 0.96450 0.97184 1.22283 0.95370 0.97895 1.01033 1.21561 0.97285 0.93447 1.02098 1.21419 0.97912 0.97756 0.97012 0.94039 0.79398 0.96273 0.96924 0.90971 0.91710 0.89953 0.92221 0.91529 0.92818 0.74588 0.87536 0.87697 0.89645 0.92101 0.89857 0.89968 0.90820 0.90138 0.92445 0.89455 0.92342 0.92952 0.90716 0.91700 0.94401 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -59.66 13.06 21.65 0.28 -59.38 16 2 C -0.08 -4.36 5.50 84.87 0.47 -3.90 16 3 Si 0.97 46.32 29.55 68.60 2.03 48.35 16 4 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16 5 H -0.29 -14.07 7.11 99.48 0.71 -13.36 16 6 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 7 C -0.25 -14.09 9.99 84.04 0.84 -13.25 16 8 H 0.07 3.98 7.83 -2.91 -0.02 3.96 16 9 N -0.74 -38.28 5.33 -343.45 -1.83 -40.12 16 10 C 0.15 6.14 5.65 86.38 0.49 6.63 16 11 C -0.09 -2.65 2.22 -10.79 -0.02 -2.67 16 12 H 0.05 1.78 8.14 -2.39 -0.02 1.77 16 13 C -0.10 -2.30 5.20 30.59 0.16 -2.14 16 14 C -0.11 -1.94 5.20 30.59 0.16 -1.78 16 15 C -0.08 -1.41 2.22 -10.80 -0.02 -1.43 16 16 H 0.09 1.33 8.14 -2.38 -0.02 1.31 16 17 C 0.13 2.35 5.07 86.38 0.44 2.79 16 18 N -0.71 -11.27 5.28 -463.06 -2.45 -13.72 16 19 C 0.51 10.78 7.91 87.66 0.69 11.47 16 20 O -0.58 -18.60 16.50 16.01 0.26 -18.33 16 21 C 0.04 0.62 6.26 71.24 0.45 1.06 16 22 O -0.39 -7.91 9.43 -129.94 -1.23 -9.14 16 23 C 0.08 1.01 3.38 31.32 0.11 1.11 16 24 C -0.15 -1.67 6.56 31.70 0.21 -1.46 16 25 C -0.12 -1.07 6.91 31.91 0.22 -0.85 16 26 C -0.12 -1.35 6.83 31.67 0.22 -1.14 16 27 C -0.13 -1.70 6.61 31.32 0.21 -1.49 16 28 C -0.11 -2.24 5.08 30.59 0.16 -2.09 16 29 C -0.10 -2.94 5.08 30.60 0.16 -2.79 16 30 H 0.25 14.98 8.31 -92.71 -0.77 14.21 16 31 H 0.37 20.41 6.85 -92.71 -0.64 19.78 16 32 H 0.02 0.77 8.14 -2.39 -0.02 0.75 16 33 H 0.01 0.52 8.14 -2.39 -0.02 0.50 16 34 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 35 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 36 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 37 H 0.06 1.18 8.14 -2.38 -0.02 1.16 16 38 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 39 H 0.05 1.17 8.14 -2.39 -0.02 1.15 16 40 H 0.42 4.05 7.65 -92.71 -0.71 3.34 16 41 H 0.11 0.90 8.14 -2.39 -0.02 0.88 16 42 H 0.11 0.96 8.10 -2.39 -0.02 0.94 16 43 H 0.09 0.77 7.81 -2.39 -0.02 0.75 16 44 H 0.06 0.91 8.08 -2.39 -0.02 0.89 16 45 H 0.08 0.65 8.14 -2.39 -0.02 0.63 16 46 H 0.08 0.53 8.14 -2.39 -0.02 0.51 16 47 H 0.07 0.60 8.14 -2.38 -0.02 0.58 16 48 H 0.08 0.65 8.14 -2.38 -0.02 0.63 16 49 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 50 H 0.09 0.86 8.14 -2.38 -0.02 0.84 16 51 H 0.06 1.03 7.95 -2.39 -0.02 1.01 16 52 H 0.05 1.24 8.14 -2.38 -0.02 1.23 16 53 H 0.07 1.31 7.18 -2.39 -0.02 1.29 16 54 H 0.06 1.74 8.14 -2.39 -0.02 1.72 16 55 H 0.04 1.35 7.18 -2.39 -0.02 1.34 16 Total: -1.00 -75.88 427.80 1.48 -74.39 By element: Atomic # 1 Polarization: 30.35 SS G_CDS: -0.50 Total: 29.85 kcal Atomic # 6 Polarization: -16.82 SS G_CDS: 4.91 Total: -11.91 kcal Atomic # 7 Polarization: -109.22 SS G_CDS: -3.99 Total: -113.21 kcal Atomic # 8 Polarization: -26.51 SS G_CDS: -0.96 Total: -27.47 kcal Atomic # 14 Polarization: 46.32 SS G_CDS: 2.03 Total: 48.35 kcal Total: -75.88 1.48 -74.39 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733564671.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.687 kcal (2) G-P(sol) polarization free energy of solvation -75.876 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.563 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.484 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.393 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.079 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds