Wall clock time and date at job start Tue Mar 31 2020 20:40:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.34425 * 124.35074 * 2 1 4 4 O 1.21275 * 124.93779 * 359.55375 * 3 2 1 5 5 C 1.51280 * 110.11330 * 179.59005 * 3 2 1 6 6 C 1.54622 * 104.19828 * 343.74319 * 5 3 2 7 7 C 1.46764 * 124.35011 * 179.97438 * 2 1 3 8 8 H 1.09002 * 110.24471 * 78.01979 * 7 2 1 9 9 C 1.50702 * 110.32031 * 316.05756 * 7 2 1 10 10 O 1.21279 * 119.99892 * 342.68168 * 9 7 2 11 11 N 1.34776 * 120.00274 * 162.67716 * 9 7 2 12 12 C 1.46495 * 120.00220 * 180.02562 * 11 9 7 13 13 C 1.53005 * 109.46939 * 180.02562 * 12 11 9 14 14 N 1.46905 * 109.46915 * 179.97438 * 13 12 11 15 15 C 1.46843 * 110.99913 * 294.21083 * 14 13 12 16 16 C 1.53034 * 109.52461 * 174.16202 * 15 14 13 17 17 C 1.53120 * 109.27904 * 59.17537 * 16 15 14 18 18 N 1.46504 * 109.52477 * 182.44564 * 17 16 15 19 19 C 1.36936 * 119.99434 * 274.68394 * 18 17 16 20 20 H 1.07992 * 120.00364 * 359.97438 * 19 18 17 21 21 C 1.38814 * 119.99838 * 179.97438 * 19 18 17 22 22 N 1.31619 * 119.99738 * 359.97438 * 21 19 18 23 23 Si 1.86795 * 120.00289 * 179.97438 * 21 19 18 24 24 H 1.48502 * 109.46902 * 90.00018 * 23 21 19 25 25 H 1.48505 * 109.47388 * 209.99804 * 23 21 19 26 26 H 1.48500 * 109.47350 * 330.00072 * 23 21 19 27 27 C 1.53122 * 109.16071 * 302.34606 * 17 16 15 28 28 C 1.46843 * 110.99840 * 169.99913 * 14 13 12 29 29 H 1.08997 * 109.47195 * 270.00397 * 1 2 3 30 30 H 1.09004 * 109.47107 * 30.00213 * 1 2 3 31 31 H 1.09002 * 109.46831 * 150.00163 * 1 2 3 32 32 H 1.09003 * 110.48288 * 225.06700 * 5 3 2 33 33 H 1.09003 * 110.48533 * 102.42793 * 5 3 2 34 34 H 1.08994 * 110.97162 * 266.67903 * 6 5 3 35 35 H 1.09007 * 111.00066 * 142.92893 * 6 5 3 36 36 H 0.97000 * 119.99513 * 0.02562 * 11 9 7 37 37 H 1.09001 * 109.46850 * 299.99885 * 12 11 9 38 38 H 1.08996 * 109.47434 * 60.00134 * 12 11 9 39 39 H 1.09001 * 109.47146 * 299.99570 * 13 12 11 40 40 H 1.08996 * 109.47057 * 59.99770 * 13 12 11 41 41 H 1.08999 * 109.46293 * 294.17713 * 15 14 13 42 42 H 1.09002 * 109.46816 * 54.14284 * 15 14 13 43 43 H 1.09005 * 109.50360 * 299.23903 * 16 15 14 44 44 H 1.08997 * 109.50798 * 179.11697 * 16 15 14 45 45 H 1.08996 * 109.52308 * 62.25015 * 17 16 15 46 46 H 0.96994 * 120.00245 * 94.68490 * 18 17 16 47 47 H 0.96999 * 120.00054 * 179.97438 * 22 21 19 48 48 H 1.08996 * 109.50505 * 297.71619 * 27 17 16 49 49 H 1.09006 * 109.50447 * 177.59172 * 27 17 16 50 50 H 1.09000 * 109.46354 * 305.85105 * 28 14 13 51 51 H 1.08999 * 109.46690 * 65.82396 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2235 1.1098 0.0000 4 8 1.7946 2.2442 -0.0077 5 6 3.6898 0.7378 0.0102 6 6 3.7010 -0.7486 0.4359 7 6 2.2931 -1.2117 0.0005 8 1 2.3306 -1.6433 -0.9997 9 6 1.7483 -2.2175 0.9817 10 8 0.9706 -1.8647 1.8429 11 7 2.1251 -3.5090 0.9021 12 6 1.5950 -4.4869 1.8555 13 6 2.1781 -5.8675 1.5473 14 7 1.6471 -6.8479 2.5038 15 6 2.1151 -6.5612 3.8658 16 6 1.4297 -7.5093 4.8523 17 6 1.7577 -8.9563 4.4738 18 7 1.0571 -9.8702 5.3795 19 6 1.6173 -10.2037 6.5837 20 1 2.5757 -9.7934 6.8655 21 6 0.9533 -11.0692 7.4421 22 7 -0.2150 -11.5688 7.0988 23 14 1.7177 -11.5248 9.0845 24 1 1.2779 -10.5564 10.1208 25 1 1.2852 -12.8923 9.4695 26 1 3.1978 -11.4879 8.9689 27 6 1.3036 -9.2145 3.0344 28 6 1.9928 -8.2169 2.1006 29 1 -0.3633 0.0001 1.0276 30 1 -0.3633 0.8900 -0.5139 31 1 -0.3633 -0.8900 -0.5138 32 1 4.2326 1.3459 0.7338 33 1 4.1195 0.8529 -0.9850 34 1 3.8268 -0.8446 1.5143 35 1 4.4754 -1.3015 -0.0960 36 1 2.7473 -3.7911 0.2135 37 1 1.8718 -4.1937 2.8682 38 1 0.5089 -4.5239 1.7720 39 1 1.9017 -6.1608 0.5346 40 1 3.2642 -5.8301 1.6311 41 1 3.1947 -6.7030 3.9162 42 1 1.8719 -5.5305 4.1240 43 1 0.3509 -7.3584 4.8124 44 1 1.7890 -7.3067 5.8612 45 1 2.8328 -9.1183 4.5512 46 1 0.1965 -10.2389 5.1262 47 1 -0.6789 -12.1738 7.6985 48 1 0.2229 -9.0903 2.9659 49 1 1.5730 -10.2302 2.7445 50 1 1.6607 -8.3889 1.0768 51 1 3.0729 -8.3510 2.1593 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001733582722.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:40:26 Heat of formation + Delta-G solvation = -48.376647 kcal Electronic energy + Delta-G solvation = -29150.703300 eV Core-core repulsion = 25085.247502 eV Total energy + Delta-G solvation = -4065.455798 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 1.28 seconds Orbital eigenvalues (eV) -41.36415 -39.61881 -38.85344 -36.70162 -35.84276 -34.57427 -33.26482 -32.34081 -30.63035 -30.21945 -29.04801 -27.35066 -27.04967 -24.40799 -23.31291 -23.07423 -22.17784 -21.29485 -21.08127 -19.86911 -19.34823 -18.14259 -17.36502 -17.06429 -16.53684 -16.41254 -15.92223 -15.65690 -15.19790 -14.95388 -14.63513 -14.38363 -14.25612 -14.11441 -13.92342 -13.78951 -13.55690 -13.33628 -13.12699 -13.00104 -12.91261 -12.57045 -12.47147 -12.37578 -11.97525 -11.75242 -11.69030 -11.55605 -11.21001 -10.88082 -10.80029 -10.62740 -10.48928 -10.28026 -10.22732 -10.19616 -9.75166 -9.60076 -9.47117 -9.12848 -8.87171 -8.31915 -6.94775 -5.76200 -3.04769 2.03877 2.09321 2.38494 2.76056 3.43052 3.48061 3.49730 3.71720 3.76111 3.93403 4.12803 4.30703 4.41546 4.58426 4.59367 4.74196 4.80724 4.88752 5.04430 5.13679 5.15835 5.20951 5.23230 5.29541 5.31303 5.38714 5.53222 5.55881 5.56918 5.63831 5.67509 5.73035 5.85706 5.92963 5.96343 6.01390 6.11833 6.25009 6.46060 6.48737 6.59039 6.63105 6.85800 6.97381 7.06456 7.18713 7.21234 7.67100 7.69591 7.76094 8.42530 9.53552 10.12219 10.46979 11.46462 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.024940 B = 0.001685 C = 0.001656 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1122.417966 B =16614.355317 C =16902.369427 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.099 3.901 2 N -0.602 5.602 3 C 0.518 3.482 4 O -0.528 6.528 5 C -0.153 4.153 6 C -0.121 4.121 7 C 0.114 3.886 8 H 0.105 0.895 9 C 0.505 3.495 10 O -0.520 6.520 11 N -0.724 5.724 12 C 0.120 3.880 13 C 0.046 3.954 14 N -0.533 5.533 15 C 0.055 3.945 16 C -0.133 4.133 17 C 0.178 3.822 18 N -0.724 5.724 19 C -0.238 4.238 20 H 0.069 0.931 21 C -0.014 4.014 22 N -0.932 5.932 23 Si 0.906 3.094 24 H -0.290 1.290 25 H -0.292 1.292 26 H -0.283 1.283 27 C -0.122 4.122 28 C 0.065 3.935 29 H 0.069 0.931 30 H 0.074 0.926 31 H 0.067 0.933 32 H 0.107 0.893 33 H 0.109 0.891 34 H 0.089 0.911 35 H 0.102 0.898 36 H 0.400 0.600 37 H 0.072 0.928 38 H 0.080 0.920 39 H 0.078 0.922 40 H 0.037 0.963 41 H 0.029 0.971 42 H 0.068 0.932 43 H 0.065 0.935 44 H 0.064 0.936 45 H 0.041 0.959 46 H 0.384 0.616 47 H 0.255 0.745 48 H 0.069 0.931 49 H 0.067 0.933 50 H 0.069 0.931 51 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.498 19.637 -21.428 30.577 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.042 4.042 2 N -0.336 5.336 3 C 0.306 3.694 4 O -0.404 6.404 5 C -0.193 4.193 6 C -0.159 4.159 7 C 0.006 3.994 8 H 0.123 0.877 9 C 0.288 3.712 10 O -0.394 6.394 11 N -0.377 5.377 12 C -0.004 4.004 13 C -0.083 4.083 14 N -0.258 5.258 15 C -0.073 4.073 16 C -0.173 4.173 17 C 0.067 3.933 18 N -0.364 5.364 19 C -0.369 4.369 20 H 0.087 0.913 21 C -0.210 4.210 22 N -0.581 5.581 23 Si 0.737 3.263 24 H -0.217 1.217 25 H -0.218 1.218 26 H -0.208 1.208 27 C -0.160 4.160 28 C -0.063 4.063 29 H 0.087 0.913 30 H 0.093 0.907 31 H 0.086 0.914 32 H 0.126 0.874 33 H 0.127 0.873 34 H 0.108 0.892 35 H 0.121 0.879 36 H 0.234 0.766 37 H 0.090 0.910 38 H 0.098 0.902 39 H 0.096 0.904 40 H 0.055 0.945 41 H 0.047 0.953 42 H 0.087 0.913 43 H 0.084 0.916 44 H 0.083 0.917 45 H 0.059 0.941 46 H 0.218 0.782 47 H 0.065 0.935 48 H 0.088 0.912 49 H 0.086 0.914 50 H 0.088 0.912 51 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges 8.178 20.467 -20.621 30.183 hybrid contribution 1.187 -0.798 0.607 1.554 sum 9.365 19.669 -20.014 29.583 Atomic orbital electron populations 1.21593 0.77085 1.02444 1.03088 1.47864 1.06885 1.05615 1.73262 1.20841 0.89220 0.84176 0.75142 1.90745 1.78670 1.20800 1.50184 1.22364 0.94856 0.96916 1.05174 1.22614 0.93913 0.95783 1.03633 1.21648 0.92006 0.86422 0.99371 0.87699 1.20613 0.81914 0.82890 0.85756 1.90776 1.33964 1.79030 1.35647 1.45900 1.48622 1.07978 1.35197 1.21416 0.99784 0.86549 0.92609 1.22172 0.97092 0.91638 0.97389 1.61832 1.59813 1.02138 1.02052 1.22241 0.96998 0.99954 0.88108 1.22321 1.00962 0.96727 0.97324 1.20232 0.95519 0.89021 0.88479 1.42417 1.23234 1.53011 1.17783 1.19231 1.02036 1.21806 0.93863 0.91309 1.24741 0.97068 1.00355 0.98861 1.69661 1.15118 1.36092 1.37213 0.86212 0.78299 0.77548 0.84257 1.21746 1.21796 1.20844 1.21869 1.01139 0.97493 0.95532 1.22048 0.97790 0.87478 0.98972 0.91265 0.90721 0.91373 0.87434 0.87253 0.89213 0.87943 0.76563 0.90968 0.90209 0.90362 0.94474 0.95255 0.91320 0.91633 0.91707 0.94101 0.78230 0.93538 0.91246 0.91448 0.91210 0.95044 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.85 9.59 59.85 0.57 1.43 16 2 N -0.60 -5.07 3.01 -174.03 -0.52 -5.59 16 3 C 0.52 4.93 8.02 -10.86 -0.09 4.85 16 4 O -0.53 -7.27 17.59 5.56 0.10 -7.17 16 5 C -0.15 -0.72 6.86 -26.75 -0.18 -0.90 16 6 C -0.12 -0.40 6.67 -25.11 -0.17 -0.57 16 7 C 0.11 0.60 3.70 -68.17 -0.25 0.35 16 8 H 0.11 0.25 8.14 -51.93 -0.42 -0.18 16 9 C 0.50 4.07 6.71 -10.98 -0.07 3.99 16 10 O -0.52 -6.66 15.01 5.56 0.08 -6.58 16 11 N -0.72 -4.36 5.56 -60.30 -0.33 -4.70 16 12 C 0.12 1.05 5.60 -4.04 -0.02 1.03 16 13 C 0.05 0.38 5.07 -3.82 -0.02 0.36 16 14 N -0.53 -6.42 4.66 -234.67 -1.09 -7.51 16 15 C 0.06 0.74 5.29 -3.84 -0.02 0.72 16 16 C -0.13 -2.33 5.68 -26.65 -0.15 -2.48 16 17 C 0.18 3.44 2.84 -67.80 -0.19 3.25 16 18 N -0.72 -17.98 5.13 -53.30 -0.27 -18.25 16 19 C -0.24 -6.56 9.93 -15.06 -0.15 -6.71 16 20 H 0.07 1.84 7.83 -52.49 -0.41 1.43 16 21 C -0.01 -0.41 5.50 -17.43 -0.10 -0.51 16 22 N -0.93 -28.14 13.06 55.49 0.72 -27.41 16 23 Si 0.91 22.34 29.55 -169.99 -5.02 17.32 16 24 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 25 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 26 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 27 C -0.12 -1.94 5.57 -26.65 -0.15 -2.09 16 28 C 0.07 0.80 5.46 -3.83 -0.02 0.78 16 29 H 0.07 0.72 7.49 -51.93 -0.39 0.33 16 30 H 0.07 0.63 7.92 -51.93 -0.41 0.22 16 31 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.11 0.47 8.14 -51.93 -0.42 0.04 16 33 H 0.11 0.29 8.14 -51.93 -0.42 -0.14 16 34 H 0.09 0.41 7.90 -51.93 -0.41 0.00 16 35 H 0.10 0.02 8.14 -51.92 -0.42 -0.40 16 36 H 0.40 1.05 8.47 -40.82 -0.35 0.70 16 37 H 0.07 0.76 6.43 -51.93 -0.33 0.42 16 38 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 39 H 0.08 0.54 7.99 -51.93 -0.41 0.13 16 40 H 0.04 0.28 8.12 -51.93 -0.42 -0.14 16 41 H 0.03 0.39 8.14 -51.93 -0.42 -0.04 16 42 H 0.07 0.87 6.21 -51.93 -0.32 0.55 16 43 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 44 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 45 H 0.04 0.82 8.08 -51.93 -0.42 0.40 16 46 H 0.38 10.19 7.80 -40.82 -0.32 9.87 16 47 H 0.25 7.45 8.31 -40.82 -0.34 7.11 16 48 H 0.07 1.17 8.14 -51.93 -0.42 0.74 16 49 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 50 H 0.07 0.73 8.02 -51.93 -0.42 0.32 16 51 H 0.03 0.38 8.14 -51.93 -0.42 -0.05 16 LS Contribution 405.67 15.07 6.11 6.11 Total: -1.00 -36.10 405.67 -10.06 -46.16 By element: Atomic # 1 Polarization: 12.94 SS G_CDS: -8.82 Total: 4.12 kcal Atomic # 6 Polarization: 4.51 SS G_CDS: -1.01 Total: 3.50 kcal Atomic # 7 Polarization: -61.97 SS G_CDS: -1.50 Total: -63.47 kcal Atomic # 8 Polarization: -13.93 SS G_CDS: 0.18 Total: -13.75 kcal Atomic # 14 Polarization: 22.34 SS G_CDS: -5.02 Total: 17.32 kcal Total LS contribution 6.11 Total: 6.11 kcal Total: -36.10 -10.06 -46.16 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733582722.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.212 kcal (2) G-P(sol) polarization free energy of solvation -36.102 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.314 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.063 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.165 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.377 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.28 seconds