Wall clock time and date at job start Tue Mar 31 2020 20:40:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.34425 * 124.35074 * 2 1 4 4 O 1.21275 * 124.93779 * 359.55375 * 3 2 1 5 5 C 1.51280 * 110.11330 * 179.59005 * 3 2 1 6 6 C 1.54622 * 104.19828 * 343.74319 * 5 3 2 7 7 C 1.46764 * 124.35011 * 179.97438 * 2 1 3 8 8 H 1.09002 * 110.24471 * 78.01979 * 7 2 1 9 9 C 1.50702 * 110.32031 * 316.05756 * 7 2 1 10 10 O 1.21279 * 119.99892 * 342.68168 * 9 7 2 11 11 N 1.34776 * 120.00274 * 162.67716 * 9 7 2 12 12 C 1.46495 * 120.00220 * 180.02562 * 11 9 7 13 13 C 1.53005 * 109.46939 * 180.02562 * 12 11 9 14 14 N 1.46905 * 109.46915 * 179.97438 * 13 12 11 15 15 C 1.46843 * 110.99913 * 294.21083 * 14 13 12 16 16 C 1.53034 * 109.52461 * 174.16202 * 15 14 13 17 17 C 1.53120 * 109.27904 * 59.17537 * 16 15 14 18 18 N 1.46504 * 109.52477 * 182.44564 * 17 16 15 19 19 C 1.36936 * 119.99434 * 274.68394 * 18 17 16 20 20 H 1.07992 * 120.00364 * 359.97438 * 19 18 17 21 21 C 1.38814 * 119.99838 * 179.97438 * 19 18 17 22 22 N 1.31619 * 119.99738 * 359.97438 * 21 19 18 23 23 Si 1.86795 * 120.00289 * 179.97438 * 21 19 18 24 24 H 1.48502 * 109.46902 * 90.00018 * 23 21 19 25 25 H 1.48505 * 109.47388 * 209.99804 * 23 21 19 26 26 H 1.48500 * 109.47350 * 330.00072 * 23 21 19 27 27 C 1.53122 * 109.16071 * 302.34606 * 17 16 15 28 28 C 1.46843 * 110.99840 * 169.99913 * 14 13 12 29 29 H 1.08997 * 109.47195 * 270.00397 * 1 2 3 30 30 H 1.09004 * 109.47107 * 30.00213 * 1 2 3 31 31 H 1.09002 * 109.46831 * 150.00163 * 1 2 3 32 32 H 1.09003 * 110.48288 * 225.06700 * 5 3 2 33 33 H 1.09003 * 110.48533 * 102.42793 * 5 3 2 34 34 H 1.08994 * 110.97162 * 266.67903 * 6 5 3 35 35 H 1.09007 * 111.00066 * 142.92893 * 6 5 3 36 36 H 0.97000 * 119.99513 * 0.02562 * 11 9 7 37 37 H 1.09001 * 109.46850 * 299.99885 * 12 11 9 38 38 H 1.08996 * 109.47434 * 60.00134 * 12 11 9 39 39 H 1.09001 * 109.47146 * 299.99570 * 13 12 11 40 40 H 1.08996 * 109.47057 * 59.99770 * 13 12 11 41 41 H 1.08999 * 109.46293 * 294.17713 * 15 14 13 42 42 H 1.09002 * 109.46816 * 54.14284 * 15 14 13 43 43 H 1.09005 * 109.50360 * 299.23903 * 16 15 14 44 44 H 1.08997 * 109.50798 * 179.11697 * 16 15 14 45 45 H 1.08996 * 109.52308 * 62.25015 * 17 16 15 46 46 H 0.96994 * 120.00245 * 94.68490 * 18 17 16 47 47 H 0.96999 * 120.00054 * 179.97438 * 22 21 19 48 48 H 1.08996 * 109.50505 * 297.71619 * 27 17 16 49 49 H 1.09006 * 109.50447 * 177.59172 * 27 17 16 50 50 H 1.09000 * 109.46354 * 305.85105 * 28 14 13 51 51 H 1.08999 * 109.46690 * 65.82396 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2235 1.1098 0.0000 4 8 1.7946 2.2442 -0.0077 5 6 3.6898 0.7378 0.0102 6 6 3.7010 -0.7486 0.4359 7 6 2.2931 -1.2117 0.0005 8 1 2.3306 -1.6433 -0.9997 9 6 1.7483 -2.2175 0.9817 10 8 0.9706 -1.8647 1.8429 11 7 2.1251 -3.5090 0.9021 12 6 1.5950 -4.4869 1.8555 13 6 2.1781 -5.8675 1.5473 14 7 1.6471 -6.8479 2.5038 15 6 2.1151 -6.5612 3.8658 16 6 1.4297 -7.5093 4.8523 17 6 1.7577 -8.9563 4.4738 18 7 1.0571 -9.8702 5.3795 19 6 1.6173 -10.2037 6.5837 20 1 2.5757 -9.7934 6.8655 21 6 0.9533 -11.0692 7.4421 22 7 -0.2150 -11.5688 7.0988 23 14 1.7177 -11.5248 9.0845 24 1 1.2779 -10.5564 10.1208 25 1 1.2852 -12.8923 9.4695 26 1 3.1978 -11.4879 8.9689 27 6 1.3036 -9.2145 3.0344 28 6 1.9928 -8.2169 2.1006 29 1 -0.3633 0.0001 1.0276 30 1 -0.3633 0.8900 -0.5139 31 1 -0.3633 -0.8900 -0.5138 32 1 4.2326 1.3459 0.7338 33 1 4.1195 0.8529 -0.9850 34 1 3.8268 -0.8446 1.5143 35 1 4.4754 -1.3015 -0.0960 36 1 2.7473 -3.7911 0.2135 37 1 1.8718 -4.1937 2.8682 38 1 0.5089 -4.5239 1.7720 39 1 1.9017 -6.1608 0.5346 40 1 3.2642 -5.8301 1.6311 41 1 3.1947 -6.7030 3.9162 42 1 1.8719 -5.5305 4.1240 43 1 0.3509 -7.3584 4.8124 44 1 1.7890 -7.3067 5.8612 45 1 2.8328 -9.1183 4.5512 46 1 0.1965 -10.2389 5.1262 47 1 -0.6789 -12.1738 7.6985 48 1 0.2229 -9.0903 2.9659 49 1 1.5730 -10.2302 2.7445 50 1 1.6607 -8.3889 1.0768 51 1 3.0729 -8.3510 2.1593 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001733582722.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:40:25 Heat of formation + Delta-G solvation = -77.305506 kcal Electronic energy + Delta-G solvation = -29151.957750 eV Core-core repulsion = 25085.247502 eV Total energy + Delta-G solvation = -4066.710247 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.95387 -40.40664 -39.89873 -37.46121 -36.97388 -35.78270 -34.08089 -33.67905 -31.85608 -31.56509 -30.05439 -28.26076 -27.65631 -26.03511 -24.47960 -23.82440 -23.25011 -22.29579 -21.76586 -20.74517 -20.47900 -19.08941 -18.69330 -17.90671 -17.37505 -17.13420 -16.78747 -16.63987 -16.30495 -15.91895 -15.75512 -15.44776 -15.33183 -15.10137 -14.87360 -14.83176 -14.60477 -14.42217 -14.18136 -13.98727 -13.64518 -13.49158 -13.15577 -13.09424 -13.00858 -12.87628 -12.86136 -12.69425 -12.38080 -12.20351 -12.17455 -12.05704 -12.03876 -11.72824 -11.51783 -11.20847 -11.13927 -10.93935 -10.84843 -10.13422 -9.78951 -9.23507 -8.99002 -7.93908 -5.22072 1.39886 1.46024 1.47885 1.47955 1.55954 1.81088 2.17390 2.55937 3.03852 3.27965 3.38946 3.42140 3.72647 3.83843 3.86313 4.00684 4.04280 4.06803 4.13622 4.24577 4.27906 4.36135 4.38343 4.39742 4.55433 4.58134 4.60187 4.72175 4.77930 4.81289 4.83372 4.87509 4.96073 4.97826 5.00359 5.04711 5.06215 5.15071 5.22500 5.33102 5.37928 5.45611 5.50316 5.62453 5.98983 6.14088 6.21223 6.29009 6.51854 7.02541 7.21352 7.34018 8.11952 8.34516 9.29682 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.024940 B = 0.001685 C = 0.001656 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1122.417966 B =16614.355317 C =16902.369427 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.100 3.900 2 N -0.608 5.608 3 C 0.502 3.498 4 O -0.585 6.585 5 C -0.143 4.143 6 C -0.111 4.111 7 C 0.114 3.886 8 H 0.150 0.850 9 C 0.503 3.497 10 O -0.576 6.576 11 N -0.703 5.703 12 C 0.127 3.873 13 C 0.054 3.946 14 N -0.549 5.549 15 C 0.068 3.932 16 C -0.125 4.125 17 C 0.171 3.829 18 N -0.739 5.739 19 C -0.237 4.237 20 H 0.074 0.926 21 C -0.079 4.079 22 N -0.970 5.970 23 Si 0.971 3.029 24 H -0.290 1.290 25 H -0.296 1.296 26 H -0.268 1.268 27 C -0.115 4.115 28 C 0.074 3.926 29 H 0.042 0.958 30 H 0.069 0.931 31 H 0.085 0.915 32 H 0.110 0.890 33 H 0.140 0.860 34 H 0.075 0.925 35 H 0.150 0.850 36 H 0.423 0.577 37 H 0.052 0.948 38 H 0.056 0.944 39 H 0.104 0.896 40 H 0.059 0.941 41 H 0.040 0.960 42 H 0.076 0.924 43 H 0.044 0.956 44 H 0.043 0.957 45 H 0.038 0.962 46 H 0.371 0.629 47 H 0.250 0.750 48 H 0.055 0.945 49 H 0.064 0.936 50 H 0.099 0.901 51 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.753 19.657 -24.029 33.562 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.042 4.042 2 N -0.341 5.341 3 C 0.292 3.708 4 O -0.466 6.466 5 C -0.182 4.182 6 C -0.148 4.148 7 C 0.007 3.993 8 H 0.167 0.833 9 C 0.288 3.712 10 O -0.455 6.455 11 N -0.357 5.357 12 C 0.002 3.998 13 C -0.074 4.074 14 N -0.274 5.274 15 C -0.061 4.061 16 C -0.165 4.165 17 C 0.063 3.937 18 N -0.378 5.378 19 C -0.369 4.369 20 H 0.092 0.908 21 C -0.271 4.271 22 N -0.621 5.621 23 Si 0.800 3.200 24 H -0.217 1.217 25 H -0.222 1.222 26 H -0.193 1.193 27 C -0.153 4.153 28 C -0.054 4.054 29 H 0.061 0.939 30 H 0.088 0.912 31 H 0.104 0.896 32 H 0.128 0.872 33 H 0.158 0.842 34 H 0.094 0.906 35 H 0.168 0.832 36 H 0.261 0.739 37 H 0.070 0.930 38 H 0.075 0.925 39 H 0.122 0.878 40 H 0.077 0.923 41 H 0.058 0.942 42 H 0.094 0.906 43 H 0.062 0.938 44 H 0.061 0.939 45 H 0.056 0.944 46 H 0.203 0.797 47 H 0.059 0.941 48 H 0.074 0.926 49 H 0.083 0.917 50 H 0.117 0.883 51 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 11.517 20.472 -23.285 33.075 hybrid contribution 0.152 -0.782 1.374 1.589 sum 11.669 19.690 -21.911 31.685 Atomic orbital electron populations 1.21492 0.78098 1.03041 1.01535 1.48097 1.06879 1.06875 1.72269 1.21822 0.91524 0.83534 0.73960 1.90703 1.80060 1.23007 1.52792 1.22420 0.90991 0.97772 1.07063 1.22734 0.93625 0.95019 1.03465 1.22014 0.92137 0.84515 1.00612 0.83292 1.21172 0.80991 0.83657 0.85371 1.90772 1.36633 1.80008 1.38077 1.45648 1.48269 1.06863 1.34910 1.21159 0.98603 0.87617 0.92375 1.22187 0.98072 0.89806 0.97318 1.61719 1.60801 1.02985 1.01926 1.22016 0.96895 0.98904 0.88241 1.22110 0.99964 0.96731 0.97714 1.20504 0.94735 0.88774 0.89716 1.42666 1.23041 1.54051 1.18032 1.19611 1.01912 1.20676 0.94688 0.90822 1.25554 0.97826 1.01203 1.02505 1.69821 1.16675 1.37262 1.38379 0.85171 0.78140 0.76671 0.79988 1.21715 1.22218 1.19310 1.21762 1.00654 0.98884 0.94036 1.21972 0.97964 0.86365 0.99068 0.93943 0.91243 0.89598 0.87183 0.84238 0.90612 0.83192 0.73926 0.92978 0.92544 0.87819 0.92322 0.94172 0.90560 0.93756 0.93850 0.94441 0.79731 0.94138 0.92623 0.91748 0.88311 0.93843 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.79 9.59 127.77 1.23 3.02 16 2 N -0.61 -9.67 3.01 -823.09 -2.48 -12.14 16 3 C 0.50 9.27 8.02 87.90 0.71 9.97 16 4 O -0.59 -16.79 17.59 -3.01 -0.05 -16.84 16 5 C -0.14 -0.92 6.86 30.58 0.21 -0.71 16 6 C -0.11 -0.27 6.67 31.65 0.21 -0.06 16 7 C 0.11 0.82 3.70 44.70 0.17 0.99 16 8 H 0.15 -0.15 8.14 -2.39 -0.02 -0.17 16 9 C 0.50 7.03 6.71 87.66 0.59 7.62 16 10 O -0.58 -14.87 15.01 -3.03 -0.05 -14.91 16 11 N -0.70 -6.01 5.56 -463.07 -2.57 -8.58 16 12 C 0.13 1.93 5.60 86.38 0.48 2.41 16 13 C 0.05 0.67 5.07 86.30 0.44 1.11 16 14 N -0.55 -11.67 4.66 -896.36 -4.17 -15.84 16 15 C 0.07 1.72 5.29 86.33 0.46 2.18 16 16 C -0.12 -4.43 5.68 30.65 0.17 -4.26 16 17 C 0.17 6.63 2.84 45.07 0.13 6.76 16 18 N -0.74 -37.58 5.13 -322.56 -1.65 -39.24 16 19 C -0.24 -13.24 9.93 84.03 0.83 -12.40 16 20 H 0.07 3.95 7.83 -2.91 -0.02 3.93 16 21 C -0.08 -4.57 5.50 84.86 0.47 -4.11 16 22 N -0.97 -60.12 13.06 21.65 0.28 -59.83 16 23 Si 0.97 46.51 29.55 68.60 2.03 48.53 16 24 H -0.29 -13.75 7.11 99.48 0.71 -13.04 16 25 H -0.30 -14.23 7.11 99.48 0.71 -13.52 16 26 H -0.27 -12.06 7.11 99.48 0.71 -11.36 16 27 C -0.11 -3.55 5.57 30.65 0.17 -3.38 16 28 C 0.07 1.58 5.46 86.33 0.47 2.05 16 29 H 0.04 0.98 7.49 -2.39 -0.02 0.96 16 30 H 0.07 1.26 7.92 -2.39 -0.02 1.24 16 31 H 0.09 1.16 8.14 -2.39 -0.02 1.14 16 32 H 0.11 0.71 8.14 -2.39 -0.02 0.69 16 33 H 0.14 0.10 8.14 -2.39 -0.02 0.08 16 34 H 0.08 0.45 7.90 -2.39 -0.02 0.44 16 35 H 0.15 -0.97 8.14 -2.38 -0.02 -0.99 16 36 H 0.42 -0.09 8.47 -92.71 -0.79 -0.88 16 37 H 0.05 1.02 6.43 -2.39 -0.02 1.01 16 38 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 39 H 0.10 0.84 7.99 -2.39 -0.02 0.83 16 40 H 0.06 0.55 8.12 -2.39 -0.02 0.53 16 41 H 0.04 0.95 8.14 -2.39 -0.02 0.93 16 42 H 0.08 1.85 6.21 -2.39 -0.01 1.83 16 43 H 0.04 1.73 8.14 -2.38 -0.02 1.71 16 44 H 0.04 1.68 8.14 -2.39 -0.02 1.66 16 45 H 0.04 1.48 8.08 -2.39 -0.02 1.46 16 46 H 0.37 20.45 7.80 -92.71 -0.72 19.72 16 47 H 0.25 15.03 8.31 -92.71 -0.77 14.26 16 48 H 0.05 1.87 8.14 -2.39 -0.02 1.85 16 49 H 0.06 2.01 8.14 -2.38 -0.02 1.99 16 50 H 0.10 1.60 8.02 -2.39 -0.02 1.58 16 51 H 0.04 0.85 8.14 -2.39 -0.02 0.83 16 Total: -1.00 -85.31 405.67 -2.51 -87.82 By element: Atomic # 1 Polarization: 20.43 SS G_CDS: -0.58 Total: 19.85 kcal Atomic # 6 Polarization: 4.46 SS G_CDS: 6.73 Total: 11.19 kcal Atomic # 7 Polarization: -125.04 SS G_CDS: -10.59 Total: -135.64 kcal Atomic # 8 Polarization: -31.66 SS G_CDS: -0.10 Total: -31.75 kcal Atomic # 14 Polarization: 46.51 SS G_CDS: 2.03 Total: 48.53 kcal Total: -85.31 -2.51 -87.82 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733582722.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.513 kcal (2) G-P(sol) polarization free energy of solvation -85.306 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.794 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.512 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.818 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.306 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds