Wall clock time and date at job start Tue Mar 31 2020 21:45:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86801 * 120.00447 * 2 1 4 4 H 1.48506 * 109.46914 * 0.02562 * 3 2 1 5 5 H 1.48495 * 109.47256 * 240.00046 * 3 2 1 6 6 H 1.48498 * 109.47079 * 119.99824 * 3 2 1 7 7 C 1.38819 * 119.99645 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99413 * 179.97438 * 7 2 1 9 9 N 1.36933 * 119.99701 * 359.97438 * 7 2 1 10 10 C 1.46499 * 119.99664 * 180.02562 * 9 7 2 11 11 C 1.53000 * 109.47128 * 180.02562 * 10 9 7 12 12 N 1.46499 * 109.47128 * 179.97438 * 11 10 9 13 13 C 1.46502 * 119.99909 * 93.95701 * 12 11 10 14 14 C 1.53004 * 109.47031 * 84.50733 * 13 12 11 15 15 O 1.42898 * 109.47035 * 64.99907 * 14 13 12 16 16 C 1.34780 * 120.00209 * 273.95811 * 12 11 10 17 17 O 1.21278 * 120.00068 * 185.07666 * 16 12 11 18 18 C 1.50702 * 119.99722 * 5.07756 * 16 12 11 19 19 H 1.09004 * 109.47068 * 41.62152 * 18 16 12 20 20 C 1.53003 * 109.46739 * 161.61659 * 18 16 12 21 21 C 1.53004 * 109.46800 * 179.97438 * 20 18 16 22 22 C 1.52997 * 109.47246 * 300.00459 * 21 20 18 23 23 H 1.09000 * 109.46859 * 299.99593 * 22 21 20 24 24 C 1.53006 * 109.46883 * 180.02562 * 22 21 20 25 25 C 1.53777 * 113.61103 * 159.13501 * 24 22 21 26 26 C 1.53953 * 87.01781 * 220.04582 * 25 24 22 27 27 C 1.53776 * 87.11292 * 25.36559 * 26 25 24 28 28 C 1.52997 * 109.47341 * 60.00158 * 22 21 20 29 29 C 1.52997 * 109.47123 * 281.62004 * 18 16 12 30 30 H 0.96998 * 120.00369 * 179.97438 * 1 2 3 31 31 H 0.96999 * 120.00313 * 0.02562 * 9 7 2 32 32 H 1.09003 * 109.47401 * 299.99908 * 10 9 7 33 33 H 1.08999 * 109.47267 * 60.00333 * 10 9 7 34 34 H 1.08999 * 109.47165 * 299.99910 * 11 10 9 35 35 H 1.09002 * 109.47250 * 60.00359 * 11 10 9 36 36 H 1.09001 * 109.47039 * 204.50421 * 13 12 11 37 37 H 1.08996 * 109.47302 * 324.50651 * 13 12 11 38 38 H 1.08997 * 109.47260 * 184.99984 * 14 13 12 39 39 H 1.09001 * 109.47046 * 304.99934 * 14 13 12 40 40 H 0.96698 * 113.99728 * 180.02562 * 15 14 13 41 41 H 1.08998 * 109.47411 * 300.00172 * 20 18 16 42 42 H 1.09004 * 109.46938 * 60.00414 * 20 18 16 43 43 H 1.09004 * 109.46883 * 60.00569 * 21 20 18 44 44 H 1.08997 * 109.46646 * 180.02562 * 21 20 18 45 45 H 1.09001 * 112.84627 * 290.32706 * 24 22 21 46 46 H 1.09001 * 113.61936 * 334.56612 * 25 24 22 47 47 H 1.09009 * 113.61614 * 105.47147 * 25 24 22 48 48 H 1.08999 * 113.54069 * 270.81357 * 26 25 24 49 49 H 1.09007 * 113.74292 * 139.94514 * 26 25 24 50 50 H 1.08999 * 113.61643 * 220.09019 * 27 26 25 51 51 H 1.09001 * 113.61707 * 89.18131 * 27 26 25 52 52 H 1.08991 * 109.47389 * 59.99900 * 28 22 21 53 53 H 1.08993 * 109.47414 * 180.02562 * 28 22 21 54 54 H 1.09000 * 109.46859 * 299.99744 * 29 18 16 55 55 H 1.09000 * 109.47212 * 60.00000 * 29 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 1.2854 2.7465 0.0006 5 1 3.1041 1.6963 -1.2125 6 1 3.1041 1.6963 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 7 1.3254 -2.3880 -0.0005 10 6 2.0579 -3.6568 -0.0005 11 6 1.0636 -4.8197 -0.0012 12 7 1.7960 -6.0884 -0.0018 13 6 2.0863 -6.7672 1.2636 14 6 0.8828 -7.6185 1.6735 15 8 0.6918 -8.6643 0.7186 16 6 2.2028 -6.6312 -1.1665 17 8 2.7271 -7.7247 -1.1755 18 6 2.0060 -5.8792 -2.4576 19 1 2.2447 -4.8267 -2.3050 20 6 2.9274 -6.4606 -3.5318 21 6 2.7271 -5.6976 -4.8428 22 6 1.2710 -5.8307 -5.2932 23 1 1.0327 -6.8834 -5.4454 24 6 1.0710 -5.0682 -6.6045 25 6 -0.1599 -5.5284 -7.4030 26 6 0.7045 -5.3777 -8.6681 27 6 1.9283 -5.6019 -7.7643 28 6 0.3497 -5.2494 -4.2189 29 6 0.5499 -6.0119 -2.9082 30 1 -0.4850 -0.8400 -0.0004 31 1 0.3554 -2.3880 -0.0005 32 1 2.6845 -3.7146 -0.8905 33 1 2.6845 -3.7146 0.8895 34 1 0.4366 -4.7621 0.8886 35 1 0.4373 -4.7618 -0.8914 36 1 2.9594 -7.4080 1.1402 37 1 2.2865 -6.0251 2.0364 38 1 1.0630 -8.0528 2.6568 39 1 -0.0090 -6.9929 1.7105 40 1 -0.0563 -9.2446 0.9153 41 1 3.9647 -6.3661 -3.2108 42 1 2.6887 -7.5132 -3.6844 43 1 2.9656 -4.6449 -4.6905 44 1 3.3832 -6.1121 -5.6082 45 1 1.1308 -3.9871 -6.4787 46 1 -0.4552 -6.5571 -7.1960 47 1 -0.9956 -4.8300 -7.3583 48 1 0.6629 -4.3811 -9.1075 49 1 0.5518 -6.1701 -9.4009 50 1 2.7760 -4.9626 -8.0108 51 1 2.2050 -6.6506 -7.6561 52 1 0.5881 -4.1968 -4.0667 53 1 -0.6876 -5.3446 -4.5395 54 1 0.3113 -7.0644 -3.0608 55 1 -0.1065 -5.5977 -2.1428 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001733619333.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:45:49 Heat of formation + Delta-G solvation = -97.380349 kcal Electronic energy + Delta-G solvation = -31347.741091 eV Core-core repulsion = 27383.700677 eV Total energy + Delta-G solvation = -3964.040414 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.52 seconds Orbital eigenvalues (eV) -41.64573 -40.27033 -38.28320 -37.69172 -37.38703 -36.05062 -33.31451 -32.52695 -31.80855 -30.53161 -28.81931 -26.58321 -26.46701 -25.53817 -24.15753 -23.86725 -23.34329 -22.39369 -20.83735 -20.28746 -20.05293 -19.31000 -18.53496 -18.08628 -17.36383 -17.00159 -16.67661 -16.12207 -15.99081 -15.72752 -15.70647 -15.35677 -15.18495 -15.04276 -14.85996 -14.68885 -14.22338 -14.13475 -13.70803 -13.42200 -13.28880 -13.26008 -13.19156 -13.07208 -12.78124 -12.71329 -12.56365 -12.41061 -12.36757 -12.29628 -12.00732 -11.93385 -11.88155 -11.42485 -11.35941 -11.33722 -11.29174 -11.02161 -10.92623 -10.83864 -10.72389 -10.42165 -9.72685 -9.13249 -8.38572 -5.34236 1.60080 1.63152 1.68874 1.85432 1.91574 2.71699 3.28722 3.40084 3.45490 3.56636 3.65074 3.79476 3.83354 3.86784 3.91562 3.99362 4.05302 4.06994 4.16281 4.22440 4.27384 4.29722 4.34296 4.38954 4.45672 4.49845 4.53244 4.58042 4.62426 4.63937 4.81541 4.82952 4.89025 4.91121 4.93250 4.95241 4.96324 5.07452 5.10780 5.13613 5.15631 5.17112 5.22749 5.23784 5.38897 5.43697 5.53766 5.56768 5.59575 5.72558 6.33452 6.51738 6.91008 7.07986 7.19068 7.97383 8.07579 9.13307 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.006420 B = 0.004169 C = 0.002759 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4360.082887 B = 6714.929884 C =10144.656490 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.971 5.971 2 C -0.094 4.094 3 Si 1.123 2.877 4 H -0.291 1.291 5 H -0.279 1.279 6 H -0.279 1.279 7 C -0.337 4.337 8 H 0.061 0.939 9 N -0.749 5.749 10 C 0.148 3.852 11 C 0.109 3.891 12 N -0.602 5.602 13 C 0.104 3.896 14 C 0.064 3.936 15 O -0.583 6.583 16 C 0.523 3.477 17 O -0.562 6.562 18 C -0.108 4.108 19 H 0.086 0.914 20 C -0.091 4.091 21 C -0.106 4.106 22 C -0.068 4.068 23 H 0.074 0.926 24 C -0.108 4.108 25 C -0.136 4.136 26 C -0.141 4.141 27 C -0.134 4.134 28 C -0.107 4.107 29 C -0.100 4.100 30 H 0.247 0.753 31 H 0.365 0.635 32 H 0.017 0.983 33 H 0.017 0.983 34 H 0.091 0.909 35 H 0.090 0.910 36 H 0.074 0.926 37 H 0.105 0.895 38 H 0.077 0.923 39 H 0.053 0.947 40 H 0.389 0.611 41 H 0.052 0.948 42 H 0.064 0.936 43 H 0.054 0.946 44 H 0.077 0.923 45 H 0.079 0.921 46 H 0.084 0.916 47 H 0.063 0.937 48 H 0.078 0.922 49 H 0.073 0.927 50 H 0.064 0.936 51 H 0.084 0.916 52 H 0.052 0.948 53 H 0.075 0.925 54 H 0.066 0.934 55 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.298 -16.301 -8.733 18.495 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.618 5.618 2 C -0.286 4.286 3 Si 0.948 3.052 4 H -0.217 1.217 5 H -0.206 1.206 6 H -0.205 1.205 7 C -0.468 4.468 8 H 0.079 0.921 9 N -0.394 5.394 10 C 0.020 3.980 11 C -0.014 4.014 12 N -0.334 5.334 13 C -0.018 4.018 14 C -0.015 4.015 15 O -0.390 6.390 16 C 0.312 3.688 17 O -0.440 6.440 18 C -0.129 4.129 19 H 0.104 0.896 20 C -0.129 4.129 21 C -0.144 4.144 22 C -0.086 4.086 23 H 0.092 0.908 24 C -0.126 4.126 25 C -0.173 4.173 26 C -0.178 4.178 27 C -0.172 4.172 28 C -0.145 4.145 29 C -0.137 4.137 30 H 0.058 0.942 31 H 0.197 0.803 32 H 0.035 0.965 33 H 0.035 0.965 34 H 0.110 0.890 35 H 0.108 0.892 36 H 0.092 0.908 37 H 0.123 0.877 38 H 0.095 0.905 39 H 0.071 0.929 40 H 0.237 0.763 41 H 0.071 0.929 42 H 0.083 0.917 43 H 0.073 0.927 44 H 0.096 0.904 45 H 0.097 0.903 46 H 0.102 0.898 47 H 0.082 0.918 48 H 0.097 0.903 49 H 0.091 0.909 50 H 0.083 0.917 51 H 0.103 0.897 52 H 0.071 0.929 53 H 0.094 0.906 54 H 0.085 0.915 55 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 0.610 -14.982 -8.987 17.482 hybrid contribution -0.547 -1.668 0.723 1.898 sum 0.063 -16.650 -8.264 18.588 Atomic orbital electron populations 1.70992 1.06995 1.28103 1.55721 1.27065 0.97097 1.04245 1.00206 0.82685 0.73488 0.71954 0.77072 1.21708 1.20568 1.20545 1.20287 0.92175 0.86986 1.47384 0.92065 1.42315 1.04870 1.01431 1.90823 1.21032 0.94315 0.84922 0.97717 1.21775 0.93856 0.81316 1.04460 1.47794 1.56829 1.22272 1.06484 1.21718 0.98399 0.96018 0.85675 1.22597 0.97544 0.89256 0.92060 1.86653 1.55388 1.44903 1.52082 1.20929 0.76643 0.85418 0.85790 1.90628 1.44721 1.21493 1.87204 1.21445 0.98982 1.00276 0.92174 0.89590 1.21276 0.97764 0.99861 0.94018 1.21524 0.97062 0.99931 0.95873 1.21098 0.94221 0.99573 0.93745 0.90776 1.22566 0.97522 0.99455 0.93101 1.22981 0.96489 1.01668 0.96172 1.22833 0.96434 1.02105 0.96452 1.22916 0.96949 1.01505 0.95806 1.21501 1.00324 0.98985 0.93659 1.21471 0.92861 1.01210 0.98175 0.94232 0.80254 0.96543 0.96489 0.89033 0.89228 0.90792 0.87702 0.90533 0.92888 0.76258 0.92944 0.91708 0.92741 0.90426 0.90311 0.89767 0.91834 0.90307 0.90874 0.91712 0.89749 0.92931 0.90629 0.91549 0.91561 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -58.49 13.70 21.65 0.30 -58.20 16 2 C -0.09 -5.30 5.50 84.86 0.47 -4.83 16 3 Si 1.12 50.76 29.92 68.60 2.05 52.81 16 4 H -0.29 -13.41 7.11 99.48 0.71 -12.70 16 5 H -0.28 -11.83 7.11 99.48 0.71 -11.13 16 6 H -0.28 -11.80 7.11 99.48 0.71 -11.09 16 7 C -0.34 -18.53 9.99 84.04 0.84 -17.69 16 8 H 0.06 3.34 7.83 -2.91 -0.02 3.32 16 9 N -0.75 -36.04 5.60 -343.45 -1.92 -37.96 16 10 C 0.15 5.71 6.40 86.38 0.55 6.26 16 11 C 0.11 3.29 5.20 86.38 0.45 3.74 16 12 N -0.60 -17.62 2.44 -821.80 -2.00 -19.62 16 13 C 0.10 2.65 5.81 86.38 0.50 3.15 16 14 C 0.06 1.32 7.39 71.98 0.53 1.85 16 15 O -0.58 -14.22 12.90 -148.79 -1.92 -16.14 16 16 C 0.52 16.97 6.61 87.66 0.58 17.55 16 17 O -0.56 -21.40 15.08 -2.84 -0.04 -21.44 16 18 C -0.11 -3.09 1.72 -11.54 -0.02 -3.11 16 19 H 0.09 2.74 5.68 -2.38 -0.01 2.72 16 20 C -0.09 -2.42 4.65 30.60 0.14 -2.28 16 21 C -0.11 -2.38 5.02 30.59 0.15 -2.22 16 22 C -0.07 -1.38 1.91 -10.79 -0.02 -1.40 16 23 H 0.07 1.46 7.98 -2.39 -0.02 1.44 16 24 C -0.11 -2.01 3.11 -10.27 -0.03 -2.04 16 25 C -0.14 -2.23 7.63 31.18 0.24 -1.99 16 26 C -0.14 -2.11 8.09 31.18 0.25 -1.86 16 27 C -0.13 -2.18 6.75 31.12 0.21 -1.97 16 28 C -0.11 -2.45 5.18 30.58 0.16 -2.30 16 29 C -0.10 -2.51 4.95 30.58 0.15 -2.36 16 30 H 0.25 14.65 6.77 -92.71 -0.63 14.02 16 31 H 0.36 17.75 6.50 -92.71 -0.60 17.15 16 32 H 0.02 0.68 6.35 -2.39 -0.02 0.66 16 33 H 0.02 0.68 8.14 -2.39 -0.02 0.66 16 34 H 0.09 2.53 8.04 -2.39 -0.02 2.51 16 35 H 0.09 2.66 4.60 -2.39 -0.01 2.65 16 36 H 0.07 2.14 7.33 -2.39 -0.02 2.12 16 37 H 0.10 2.29 8.11 -2.39 -0.02 2.27 16 38 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16 39 H 0.05 1.01 8.14 -2.39 -0.02 0.99 16 40 H 0.39 5.67 9.12 -74.06 -0.68 5.00 16 41 H 0.05 1.48 8.14 -2.39 -0.02 1.46 16 42 H 0.06 1.79 7.91 -2.38 -0.02 1.77 16 43 H 0.05 1.33 8.14 -2.38 -0.02 1.31 16 44 H 0.08 1.52 7.49 -2.39 -0.02 1.50 16 45 H 0.08 1.65 8.14 -2.39 -0.02 1.63 16 46 H 0.08 1.30 7.99 -2.39 -0.02 1.28 16 47 H 0.06 1.06 8.14 -2.38 -0.02 1.04 16 48 H 0.08 1.16 8.14 -2.39 -0.02 1.15 16 49 H 0.07 0.96 8.14 -2.38 -0.02 0.95 16 50 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 51 H 0.08 1.29 8.10 -2.39 -0.02 1.27 16 52 H 0.05 1.39 8.14 -2.39 -0.02 1.37 16 53 H 0.08 1.56 8.14 -2.39 -0.02 1.54 16 54 H 0.07 1.67 8.14 -2.39 -0.02 1.65 16 55 H 0.07 1.70 5.67 -2.39 -0.01 1.68 16 Total: -1.00 -71.00 418.19 1.35 -69.65 By element: Atomic # 1 Polarization: 42.66 SS G_CDS: -0.26 Total: 42.39 kcal Atomic # 6 Polarization: -16.64 SS G_CDS: 5.15 Total: -11.49 kcal Atomic # 7 Polarization: -112.15 SS G_CDS: -3.63 Total: -115.78 kcal Atomic # 8 Polarization: -35.62 SS G_CDS: -1.96 Total: -37.59 kcal Atomic # 14 Polarization: 50.76 SS G_CDS: 2.05 Total: 52.81 kcal Total: -71.00 1.35 -69.65 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733619333.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.728 kcal (2) G-P(sol) polarization free energy of solvation -71.003 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.731 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.351 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.652 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.380 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.52 seconds