Wall clock time and date at job start Tue Mar 31 2020 21:46:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86801 * 120.00211 * 2 1 4 4 H 1.48498 * 109.47180 * 240.00034 * 3 2 1 5 5 H 1.48502 * 109.46643 * 359.97438 * 3 2 1 6 6 H 1.48495 * 109.47077 * 119.99671 * 3 2 1 7 7 C 1.38819 * 120.00210 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00213 * 191.04006 * 7 2 1 9 9 N 1.36937 * 119.99872 * 11.03565 * 7 2 1 10 10 C 1.46930 * 120.63167 * 31.71490 * 9 7 2 11 11 C 1.53188 * 108.77145 * 126.37070 * 10 9 7 12 12 C 1.53043 * 109.31674 * 54.63964 * 11 10 9 13 13 C 1.52999 * 109.46307 * 178.61542 * 12 11 10 14 14 O 1.42896 * 109.46969 * 180.73173 * 13 12 11 15 15 N 1.46499 * 109.45996 * 58.64820 * 12 11 10 16 16 C 1.34780 * 119.99778 * 62.65098 * 15 12 11 17 17 O 1.21280 * 119.99643 * 354.88862 * 16 15 12 18 18 C 1.50691 * 120.00061 * 174.88588 * 16 15 12 19 19 C 1.52999 * 109.47348 * 180.02562 * 18 16 15 20 20 C 1.52994 * 109.47521 * 180.02562 * 19 18 16 21 21 C 1.52999 * 109.47521 * 179.97438 * 20 19 18 22 22 C 1.54269 * 110.03159 * 292.90429 * 21 20 19 23 23 C 1.54962 * 104.16119 * 217.13544 * 22 21 20 24 24 C 1.54885 * 102.77673 * 37.88944 * 23 22 21 25 25 C 1.53880 * 110.03386 * 175.68903 * 21 20 19 26 26 C 1.53042 * 109.53187 * 298.63376 * 12 11 10 27 27 C 1.46928 * 120.62926 * 211.69892 * 9 7 2 28 28 H 0.96990 * 119.99897 * 0.02562 * 1 2 3 29 29 H 1.09003 * 109.58289 * 6.58666 * 10 9 7 30 30 H 1.08998 * 109.70219 * 246.22739 * 10 9 7 31 31 H 1.09000 * 109.49631 * 174.59064 * 11 10 9 32 32 H 1.09001 * 109.49771 * 294.68257 * 11 10 9 33 33 H 1.08999 * 109.46452 * 300.72972 * 13 12 11 34 34 H 1.08995 * 109.47535 * 60.72604 * 13 12 11 35 35 H 0.96701 * 113.99858 * 179.97438 * 14 13 12 36 36 H 0.96995 * 120.00503 * 242.65554 * 15 12 11 37 37 H 1.09000 * 109.47318 * 300.00107 * 18 16 15 38 38 H 1.09003 * 109.47346 * 60.00369 * 18 16 15 39 39 H 1.09000 * 109.46771 * 300.00163 * 19 18 16 40 40 H 1.09001 * 109.47554 * 59.99656 * 19 18 16 41 41 H 1.09009 * 109.47053 * 299.99931 * 20 19 18 42 42 H 1.09003 * 109.47670 * 59.99401 * 20 19 18 43 43 H 1.08997 * 110.01791 * 54.29648 * 21 20 19 44 44 H 1.09000 * 110.48667 * 335.78903 * 22 21 20 45 45 H 1.09004 * 110.48400 * 98.42581 * 22 21 20 46 46 H 1.08996 * 110.71866 * 279.57126 * 23 22 21 47 47 H 1.09000 * 110.92377 * 156.30075 * 23 22 21 48 48 H 1.09003 * 110.48749 * 203.40744 * 24 23 22 49 49 H 1.09001 * 110.60433 * 80.81892 * 24 23 22 50 50 H 1.09002 * 110.03133 * 238.56765 * 25 21 20 51 51 H 1.08994 * 110.03194 * 0.02562 * 25 21 20 52 52 H 1.08994 * 109.50141 * 301.40778 * 26 12 11 53 53 H 1.09001 * 109.51856 * 181.33058 * 26 12 11 54 54 H 1.08995 * 109.58712 * 353.41337 * 27 9 7 55 55 H 1.08997 * 109.58872 * 113.84131 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6964 -1.2125 5 1 1.2852 2.7464 -0.0006 6 1 3.1039 1.6964 1.2125 7 6 2.0103 -1.2022 -0.0005 8 1 3.0754 -1.2109 0.1786 9 7 1.3446 -2.3770 -0.2281 10 6 0.1681 -2.4127 -1.1075 11 6 0.3867 -3.4842 -2.1802 12 6 0.7068 -4.8194 -1.5042 13 6 0.8918 -5.8998 -2.5717 14 8 1.1738 -7.1501 -1.9400 15 7 -0.3970 -5.1942 -0.6169 16 6 -1.6233 -5.4240 -1.1269 17 8 -1.8358 -5.2311 -2.3052 18 6 -2.7301 -5.9208 -0.2330 19 6 -4.0082 -6.0991 -1.0548 20 6 -5.1321 -6.6029 -0.1472 21 6 -6.4105 -6.7805 -0.9689 22 6 -6.9271 -5.4074 -1.4460 23 6 -8.4692 -5.5309 -1.3573 24 6 -8.6726 -6.3637 -0.0673 25 6 -7.5199 -7.3886 -0.0929 26 6 1.9939 -4.6839 -0.6875 27 6 1.7936 -3.6260 0.4023 28 1 -0.4849 0.8400 -0.0004 29 1 0.0379 -1.4406 -1.5831 30 1 -0.7197 -2.6558 -0.5237 31 1 -0.5172 -3.5877 -2.7804 32 1 1.2184 -3.1925 -2.8216 33 1 -0.0208 -5.9881 -3.1610 34 1 1.7210 -5.6273 -3.2245 35 1 1.3027 -7.8827 -2.5579 36 1 -0.2455 -5.2768 0.3376 37 1 -2.4429 -6.8774 0.2035 38 1 -2.9072 -5.1970 0.5625 39 1 -4.2956 -5.1427 -1.4917 40 1 -3.8309 -6.8231 -1.8501 41 1 -4.8450 -7.5592 0.2901 42 1 -5.3094 -5.8786 0.6479 43 1 -6.2163 -7.4249 -1.8263 44 1 -6.5694 -4.6156 -0.7878 45 1 -6.6171 -5.2194 -2.4739 46 1 -8.8642 -6.0596 -2.2248 47 1 -8.9334 -4.5495 -1.2608 48 1 -9.6362 -6.8728 -0.0898 49 1 -8.5985 -5.7282 0.8152 50 1 -7.8648 -8.3277 -0.5258 51 1 -7.1478 -7.5567 0.9176 52 1 2.8105 -4.3810 -1.3428 53 1 2.2345 -5.6413 -0.2253 54 1 2.7358 -3.4545 0.9227 55 1 1.0397 -3.9694 1.1107 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001733916561.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:46:40 Heat of formation + Delta-G solvation = -118.576690 kcal Electronic energy + Delta-G solvation = -31079.928075 eV Core-core repulsion = 27114.968518 eV Total energy + Delta-G solvation = -3964.959557 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -41.49101 -39.53027 -38.89154 -37.43201 -35.63154 -35.12044 -33.63195 -32.25870 -31.50268 -30.57246 -29.52387 -28.37386 -26.53270 -25.65053 -23.96534 -23.25623 -22.42657 -21.58861 -21.13817 -20.40713 -20.12763 -18.83994 -18.20409 -17.86983 -16.91991 -16.81854 -16.58939 -16.36648 -15.92467 -15.83829 -15.52148 -15.23488 -15.05321 -14.81742 -14.64361 -14.30294 -14.15027 -14.06394 -13.80024 -13.47426 -13.33723 -13.16758 -13.00942 -12.87779 -12.59939 -12.47607 -12.38113 -12.25476 -12.04508 -11.93468 -11.91740 -11.85452 -11.76046 -11.52589 -11.44153 -11.42732 -11.34883 -11.23886 -11.13348 -11.00080 -10.54804 -10.29077 -9.85135 -8.61199 -7.86192 -5.37520 1.45920 1.48300 1.54671 1.83293 2.35870 2.50586 3.26645 3.32961 3.66167 3.72011 3.76830 3.79899 3.82410 4.00146 4.04869 4.16576 4.17522 4.27785 4.48126 4.50242 4.53324 4.56387 4.60719 4.63747 4.65527 4.72562 4.75181 4.76642 4.81400 4.87743 4.90419 4.97798 4.99250 5.03085 5.05104 5.09252 5.16274 5.17641 5.19631 5.28549 5.31926 5.33824 5.42210 5.46778 5.48434 5.52800 5.62450 5.63684 5.69919 5.78495 6.41030 6.75610 6.89577 7.15832 7.43876 7.85754 8.39230 9.19002 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.011160 B = 0.002797 C = 0.002363 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2508.411657 B =10008.415010 C =11847.513262 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.050 4.050 3 Si 0.968 3.032 4 H -0.279 1.279 5 H -0.296 1.296 6 H -0.273 1.273 7 C -0.264 4.264 8 H 0.067 0.933 9 N -0.607 5.607 10 C 0.198 3.802 11 C -0.139 4.139 12 C 0.194 3.806 13 C 0.076 3.924 14 O -0.572 6.572 15 N -0.702 5.702 16 C 0.510 3.490 17 O -0.580 6.580 18 C -0.135 4.135 19 C -0.094 4.094 20 C -0.105 4.105 21 C -0.092 4.092 22 C -0.125 4.125 23 C -0.127 4.127 24 C -0.125 4.125 25 C -0.119 4.119 26 C -0.118 4.118 27 C 0.142 3.858 28 H 0.248 0.752 29 H 0.043 0.957 30 H -0.005 1.005 31 H 0.062 0.938 32 H 0.056 0.944 33 H 0.050 0.950 34 H 0.056 0.944 35 H 0.392 0.608 36 H 0.405 0.595 37 H 0.115 0.885 38 H 0.096 0.904 39 H 0.046 0.954 40 H 0.057 0.943 41 H 0.076 0.924 42 H 0.063 0.937 43 H 0.067 0.933 44 H 0.057 0.943 45 H 0.053 0.947 46 H 0.068 0.932 47 H 0.064 0.936 48 H 0.072 0.928 49 H 0.063 0.937 50 H 0.068 0.932 51 H 0.070 0.930 52 H 0.068 0.932 53 H 0.089 0.911 54 H 0.059 0.941 55 H 0.022 0.978 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.969 -18.784 -0.624 21.275 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.245 4.245 3 Si 0.796 3.204 4 H -0.205 1.205 5 H -0.222 1.222 6 H -0.198 1.198 7 C -0.394 4.394 8 H 0.085 0.915 9 N -0.331 5.331 10 C 0.073 3.927 11 C -0.179 4.179 12 C 0.108 3.892 13 C -0.003 4.003 14 O -0.379 6.379 15 N -0.353 5.353 16 C 0.298 3.702 17 O -0.461 6.461 18 C -0.174 4.174 19 C -0.132 4.132 20 C -0.142 4.142 21 C -0.110 4.110 22 C -0.163 4.163 23 C -0.164 4.164 24 C -0.162 4.162 25 C -0.156 4.156 26 C -0.157 4.157 27 C 0.016 3.984 28 H 0.057 0.943 29 H 0.062 0.938 30 H 0.013 0.987 31 H 0.080 0.920 32 H 0.074 0.926 33 H 0.068 0.932 34 H 0.075 0.925 35 H 0.241 0.759 36 H 0.240 0.760 37 H 0.133 0.867 38 H 0.114 0.886 39 H 0.065 0.935 40 H 0.076 0.924 41 H 0.095 0.905 42 H 0.082 0.918 43 H 0.086 0.914 44 H 0.076 0.924 45 H 0.072 0.928 46 H 0.087 0.913 47 H 0.083 0.917 48 H 0.090 0.910 49 H 0.081 0.919 50 H 0.087 0.913 51 H 0.088 0.912 52 H 0.086 0.914 53 H 0.107 0.893 54 H 0.077 0.923 55 H 0.040 0.960 Dipole moment (debyes) X Y Z Total from point charges -10.240 -18.167 -0.893 20.873 hybrid contribution 0.484 1.153 -0.310 1.288 sum -9.757 -17.014 -1.203 19.650 Atomic orbital electron populations 1.70146 1.06691 1.25729 1.55474 1.25930 0.96123 1.01599 1.00858 0.85340 0.77500 0.79200 0.78366 1.20507 1.22239 1.19833 1.19471 0.91294 0.85198 1.43424 0.91526 1.44236 1.32584 1.04264 1.52007 1.20259 0.87529 0.95526 0.89430 1.22357 1.01067 0.95494 0.99019 1.20133 0.87105 0.91805 0.90193 1.22421 0.99553 0.84150 0.94191 1.86396 1.94201 1.18792 1.38538 1.45937 1.08852 1.69313 1.11189 1.21212 0.83884 0.76212 0.88890 1.90578 1.82856 1.53783 1.18851 1.21715 0.93189 1.03910 0.98618 1.21239 0.93010 1.01152 0.97800 1.21687 0.93314 1.01682 0.97527 1.21774 0.94812 0.96289 0.98135 1.22489 0.95979 0.97291 1.00554 1.22524 0.95391 1.00154 0.98339 1.22365 0.98670 0.97589 0.97592 1.22216 0.94909 0.98476 1.00042 1.22073 0.95350 0.99736 0.98533 1.21064 0.97763 0.86128 0.93407 0.94286 0.93844 0.98665 0.91980 0.92560 0.93172 0.92539 0.75950 0.75962 0.86651 0.88563 0.93525 0.92396 0.90516 0.91786 0.91424 0.92389 0.92772 0.91333 0.91718 0.90958 0.91851 0.91330 0.91156 0.91372 0.89261 0.92280 0.96016 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.12 11.10 21.65 0.24 -55.88 16 2 C -0.05 -2.79 5.04 84.86 0.43 -2.37 16 3 Si 0.97 45.27 29.57 68.60 2.03 47.30 16 4 H -0.28 -12.71 7.11 99.48 0.71 -12.01 16 5 H -0.30 -14.00 7.11 99.48 0.71 -13.30 16 6 H -0.27 -12.21 7.11 99.48 0.71 -11.51 16 7 C -0.26 -14.48 9.57 84.04 0.80 -13.67 16 8 H 0.07 3.54 7.85 -2.91 -0.02 3.51 16 9 N -0.61 -30.33 2.98 -699.09 -2.09 -32.41 16 10 C 0.20 9.98 4.99 86.36 0.43 10.41 16 11 C -0.14 -5.79 4.71 30.67 0.14 -5.65 16 12 C 0.19 6.57 0.44 3.63 0.00 6.57 16 13 C 0.08 2.21 5.68 71.98 0.41 2.62 16 14 O -0.57 -14.02 12.84 -148.98 -1.91 -15.93 16 15 N -0.70 -22.20 3.98 -422.80 -1.68 -23.89 16 16 C 0.51 16.32 7.24 87.65 0.63 16.96 16 17 O -0.58 -22.25 12.23 -3.03 -0.04 -22.29 16 18 C -0.13 -3.16 5.70 29.85 0.17 -2.99 16 19 C -0.09 -2.18 4.35 30.59 0.13 -2.05 16 20 C -0.10 -1.85 4.34 30.59 0.13 -1.72 16 21 C -0.09 -1.58 2.93 -10.07 -0.03 -1.61 16 22 C -0.13 -2.44 5.50 31.70 0.17 -2.27 16 23 C -0.13 -2.05 6.91 31.91 0.22 -1.83 16 24 C -0.12 -1.78 6.83 31.67 0.22 -1.56 16 25 C -0.12 -1.69 6.46 31.32 0.20 -1.49 16 26 C -0.12 -3.86 4.85 30.67 0.15 -3.71 16 27 C 0.14 5.61 6.24 86.36 0.54 6.15 16 28 H 0.25 14.56 8.31 -92.72 -0.77 13.78 16 29 H 0.04 2.53 6.14 -2.39 -0.01 2.51 16 30 H 0.00 -0.25 7.74 -2.39 -0.02 -0.27 16 31 H 0.06 2.71 6.23 -2.39 -0.01 2.70 16 32 H 0.06 2.33 8.14 -2.39 -0.02 2.31 16 33 H 0.05 1.64 6.17 -2.39 -0.01 1.62 16 34 H 0.06 1.52 8.14 -2.39 -0.02 1.50 16 35 H 0.39 5.98 9.12 -74.06 -0.68 5.31 16 36 H 0.40 11.62 7.19 -92.71 -0.67 10.95 16 37 H 0.12 2.08 8.14 -2.39 -0.02 2.06 16 38 H 0.10 2.17 8.14 -2.39 -0.02 2.15 16 39 H 0.05 1.31 7.44 -2.39 -0.02 1.29 16 40 H 0.06 1.43 8.10 -2.39 -0.02 1.41 16 41 H 0.08 1.13 8.14 -2.38 -0.02 1.11 16 42 H 0.06 1.14 8.02 -2.39 -0.02 1.12 16 43 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 44 H 0.06 1.24 7.77 -2.39 -0.02 1.22 16 45 H 0.05 1.15 8.14 -2.38 -0.02 1.13 16 46 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 47 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 48 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 49 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 50 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 51 H 0.07 0.93 7.67 -2.39 -0.02 0.91 16 52 H 0.07 2.29 8.14 -2.39 -0.02 2.27 16 53 H 0.09 2.54 7.66 -2.39 -0.02 2.52 16 54 H 0.06 2.28 7.93 -2.39 -0.02 2.27 16 55 H 0.02 0.84 6.89 -2.39 -0.02 0.82 16 Total: -1.00 -68.94 411.89 0.83 -68.11 By element: Atomic # 1 Polarization: 33.70 SS G_CDS: -0.48 Total: 33.22 kcal Atomic # 6 Polarization: -2.98 SS G_CDS: 4.76 Total: 1.78 kcal Atomic # 7 Polarization: -108.65 SS G_CDS: -3.53 Total: -112.18 kcal Atomic # 8 Polarization: -36.27 SS G_CDS: -1.95 Total: -38.22 kcal Atomic # 14 Polarization: 45.27 SS G_CDS: 2.03 Total: 47.30 kcal Total: -68.94 0.83 -68.11 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733916561.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.467 kcal (2) G-P(sol) polarization free energy of solvation -68.944 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.411 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.835 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.109 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.577 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds