Wall clock time and date at job start Tue Mar 31 2020 21:52:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86802 * 119.99920 * 2 1 4 4 H 1.48492 * 109.47448 * 179.97438 * 3 2 1 5 5 H 1.48503 * 109.46556 * 299.99452 * 3 2 1 6 6 H 1.48501 * 109.47169 * 59.99091 * 3 2 1 7 7 C 1.38806 * 120.00300 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00212 * 180.02562 * 7 2 1 9 9 N 1.36943 * 119.99831 * 0.02562 * 7 2 1 10 10 C 1.46500 * 119.99610 * 180.02562 * 9 7 2 11 11 C 1.53003 * 109.46932 * 175.03958 * 10 9 7 12 12 N 1.46494 * 109.47057 * 305.42116 * 11 10 9 13 13 C 1.34777 * 119.99942 * 303.90870 * 12 11 10 14 14 O 1.21282 * 120.00074 * 354.67120 * 13 12 11 15 15 C 1.50703 * 119.99750 * 174.94236 * 13 12 11 16 16 C 1.53005 * 109.46816 * 179.72338 * 15 13 12 17 17 C 1.53001 * 109.47286 * 179.97438 * 16 15 13 18 18 H 1.09003 * 109.47832 * 55.00250 * 17 16 15 19 19 C 1.53087 * 109.48017 * 175.02758 * 17 16 15 20 20 C 1.53182 * 109.15950 * 177.58572 * 19 17 16 21 21 C 1.53179 * 109.04354 * 303.03225 * 20 19 17 22 22 C 1.53092 * 109.16289 * 56.97891 * 21 20 19 23 23 O 1.42902 * 109.41408 * 302.38916 * 22 21 20 24 24 C 1.53003 * 109.46773 * 65.41752 * 11 10 9 25 25 C 1.53003 * 109.46773 * 179.97438 * 24 11 10 26 26 C 1.53002 * 109.47236 * 299.99960 * 25 24 11 27 27 C 1.52997 * 109.47070 * 60.00031 * 26 25 24 28 28 C 1.52998 * 109.47384 * 300.00085 * 27 26 25 29 29 H 0.96997 * 120.00567 * 0.02562 * 1 2 3 30 30 H 0.96993 * 120.00008 * 359.97438 * 9 7 2 31 31 H 1.08993 * 109.47487 * 55.04045 * 10 9 7 32 32 H 1.09004 * 109.47204 * 295.03808 * 10 9 7 33 33 H 0.97005 * 119.99937 * 123.91554 * 12 11 10 34 34 H 1.08991 * 109.47511 * 299.72721 * 15 13 12 35 35 H 1.09001 * 109.47002 * 59.73224 * 15 13 12 36 36 H 1.08999 * 109.47255 * 300.00762 * 16 15 13 37 37 H 1.09009 * 109.46904 * 60.00674 * 16 15 13 38 38 H 1.08995 * 109.52259 * 297.49592 * 19 17 16 39 39 H 1.08996 * 109.52757 * 57.69146 * 19 17 16 40 40 H 1.09005 * 109.54508 * 183.16532 * 20 19 17 41 41 H 1.08996 * 109.61293 * 62.94375 * 20 19 17 42 42 H 1.08996 * 109.52410 * 297.07132 * 21 20 19 43 43 H 1.08999 * 109.57705 * 176.91620 * 21 20 19 44 44 H 1.09003 * 109.48484 * 182.41084 * 22 21 20 45 45 H 1.09000 * 109.48094 * 62.37107 * 22 21 20 46 46 H 1.09000 * 109.47756 * 299.99810 * 24 11 10 47 47 H 1.09004 * 109.47148 * 60.00469 * 24 11 10 48 48 H 1.09000 * 109.46921 * 180.02562 * 25 24 11 49 49 H 1.08997 * 109.47516 * 60.00266 * 25 24 11 50 50 H 1.08996 * 109.47153 * 299.99993 * 26 25 24 51 51 H 1.08997 * 109.47233 * 180.02562 * 26 25 24 52 52 H 1.09000 * 109.47175 * 179.97438 * 27 26 25 53 53 H 1.09004 * 109.46993 * 59.99687 * 27 26 25 54 54 H 1.08996 * 109.46876 * 300.00060 * 28 27 26 55 55 H 1.09000 * 109.47239 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7101 1.3465 0.0006 5 1 1.8914 2.3963 -1.2126 6 1 1.8912 2.3966 1.2124 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2020 0.0010 9 7 1.3256 -2.3880 0.0005 10 6 2.0582 -3.6567 0.0017 11 6 1.0686 -4.8169 0.1262 12 7 0.2285 -4.6174 1.3096 13 6 0.7976 -4.4594 2.5211 14 8 1.9979 -4.5786 2.6474 15 6 -0.0583 -4.1408 3.7198 16 6 0.8276 -4.0207 4.9615 17 6 -0.0412 -3.6965 6.1785 18 1 -0.8256 -4.4472 6.2754 19 6 0.8261 -3.6986 7.4400 20 6 -0.0382 -3.3143 8.6449 21 6 -0.6814 -1.9489 8.3836 22 6 -1.4905 -2.0147 7.0856 23 8 -0.6338 -2.4069 6.0112 24 6 0.1860 -4.8706 -1.1225 25 6 -0.8032 -6.0312 -0.9983 26 6 -0.0324 -7.3459 -0.8616 27 6 0.8501 -7.2921 0.3870 28 6 1.8393 -6.1316 0.2629 29 1 -0.4851 0.8400 -0.0004 30 1 0.3556 -2.3881 0.0005 31 1 2.7491 -3.6765 0.8444 32 1 2.6173 -3.7543 -0.9290 33 1 -0.7373 -4.5990 1.2213 34 1 -0.5804 -3.1987 3.5534 35 1 -0.7863 -4.9383 3.8688 36 1 1.3498 -4.9629 5.1279 37 1 1.5556 -3.2231 4.8126 38 1 1.2434 -4.6937 7.5935 39 1 1.6349 -2.9768 7.3272 40 1 0.5847 -3.2590 9.5377 41 1 -0.8174 -4.0626 8.7898 42 1 0.0969 -1.1916 8.2896 43 1 -1.3417 -1.6916 9.2117 44 1 -1.9155 -1.0339 6.8720 45 1 -2.2938 -2.7433 7.1945 46 1 -0.3628 -3.9339 -1.2202 47 1 0.8111 -5.0191 -2.0031 48 1 -1.4316 -6.0698 -1.8881 49 1 -1.4283 -5.8833 -0.1178 50 1 0.5926 -7.4939 -1.7422 51 1 -0.7371 -8.1727 -0.7736 52 1 1.3989 -8.2289 0.4846 53 1 0.2250 -7.1441 1.2676 54 1 2.4643 -6.2795 -0.6178 55 1 2.4678 -6.0930 1.1526 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001734094251.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:52:04 Heat of formation + Delta-G solvation = -126.940675 kcal Electronic energy + Delta-G solvation = -31637.742196 eV Core-core repulsion = 27672.419950 eV Total energy + Delta-G solvation = -3965.322246 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.56516 -40.37374 -38.91807 -36.39136 -34.86661 -34.58131 -34.52296 -33.09735 -31.73392 -31.27724 -30.34519 -27.03086 -26.70939 -24.84842 -24.67290 -23.50612 -22.89753 -21.80645 -21.34057 -21.02409 -19.98932 -19.21615 -18.14708 -17.49901 -16.90830 -16.79268 -16.49742 -16.19509 -16.08146 -15.54469 -15.45971 -15.24287 -14.97117 -14.90434 -14.71500 -14.59222 -14.52377 -14.05283 -13.72323 -13.56731 -13.38168 -13.18923 -13.07497 -12.95292 -12.87662 -12.72658 -12.70200 -12.54657 -12.13137 -12.08466 -12.07415 -11.96881 -11.88382 -11.81878 -11.56676 -11.42501 -11.18253 -11.11340 -11.04034 -10.97669 -10.38082 -10.25918 -9.75894 -8.93448 -7.95337 -5.20832 1.41927 1.43619 1.53064 1.88178 2.41633 2.54992 2.89962 3.37787 3.66316 3.72887 3.83888 3.88375 3.90283 3.95825 4.00589 4.08034 4.12340 4.18004 4.28316 4.35318 4.37035 4.46294 4.49135 4.54044 4.62580 4.64075 4.65497 4.69486 4.76941 4.83753 4.87729 4.88286 4.91645 4.94083 5.06803 5.10922 5.13893 5.15194 5.18094 5.21467 5.22387 5.27885 5.29406 5.34454 5.41240 5.42379 5.45924 5.53095 5.56357 5.83953 6.27796 6.40876 6.80119 7.35004 7.51779 8.10244 8.38900 9.27811 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.007143 B = 0.004300 C = 0.002954 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3919.167708 B = 6509.607918 C = 9476.696283 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.961 5.961 2 C -0.067 4.067 3 Si 0.965 3.035 4 H -0.275 1.275 5 H -0.287 1.287 6 H -0.294 1.294 7 C -0.242 4.242 8 H 0.059 0.941 9 N -0.727 5.727 10 C 0.140 3.860 11 C 0.185 3.815 12 N -0.703 5.703 13 C 0.516 3.484 14 O -0.575 6.575 15 C -0.129 4.129 16 C -0.088 4.088 17 C 0.093 3.907 18 H 0.079 0.921 19 C -0.151 4.151 20 C -0.118 4.118 21 C -0.156 4.156 22 C 0.053 3.947 23 O -0.407 6.407 24 C -0.114 4.114 25 C -0.112 4.112 26 C -0.112 4.112 27 C -0.105 4.105 28 C -0.121 4.121 29 H 0.251 0.749 30 H 0.377 0.623 31 H 0.019 0.981 32 H 0.012 0.988 33 H 0.405 0.595 34 H 0.083 0.917 35 H 0.121 0.879 36 H 0.089 0.911 37 H 0.038 0.962 38 H 0.088 0.912 39 H 0.051 0.949 40 H 0.076 0.924 41 H 0.078 0.922 42 H 0.054 0.946 43 H 0.092 0.908 44 H 0.090 0.910 45 H 0.066 0.934 46 H 0.051 0.949 47 H 0.073 0.927 48 H 0.076 0.924 49 H 0.067 0.933 50 H 0.064 0.936 51 H 0.079 0.921 52 H 0.069 0.931 53 H 0.058 0.942 54 H 0.068 0.932 55 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.950 -16.734 11.911 21.684 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.612 5.612 2 C -0.259 4.259 3 Si 0.794 3.206 4 H -0.200 1.200 5 H -0.214 1.214 6 H -0.221 1.221 7 C -0.374 4.374 8 H 0.077 0.923 9 N -0.370 5.370 10 C 0.013 3.987 11 C 0.098 3.902 12 N -0.355 5.355 13 C 0.304 3.696 14 O -0.455 6.455 15 C -0.169 4.169 16 C -0.126 4.126 17 C 0.036 3.964 18 H 0.097 0.903 19 C -0.189 4.189 20 C -0.155 4.155 21 C -0.194 4.194 22 C -0.024 4.024 23 O -0.327 6.327 24 C -0.152 4.152 25 C -0.150 4.150 26 C -0.150 4.150 27 C -0.143 4.143 28 C -0.160 4.160 29 H 0.060 0.940 30 H 0.211 0.789 31 H 0.037 0.963 32 H 0.030 0.970 33 H 0.241 0.759 34 H 0.101 0.899 35 H 0.139 0.861 36 H 0.108 0.892 37 H 0.057 0.943 38 H 0.106 0.894 39 H 0.070 0.930 40 H 0.095 0.905 41 H 0.097 0.903 42 H 0.073 0.927 43 H 0.111 0.889 44 H 0.108 0.892 45 H 0.084 0.916 46 H 0.070 0.930 47 H 0.092 0.908 48 H 0.095 0.905 49 H 0.085 0.915 50 H 0.082 0.918 51 H 0.098 0.902 52 H 0.088 0.912 53 H 0.077 0.923 54 H 0.087 0.913 55 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -5.898 -16.592 11.818 21.207 hybrid contribution 0.091 1.632 -0.032 1.635 sum -5.807 -14.960 11.786 19.911 Atomic orbital electron populations 1.69776 1.06092 1.25767 1.59578 1.25373 0.96411 1.00358 1.03803 0.85198 0.78019 0.80463 0.76870 1.19952 1.21362 1.22102 1.19539 0.90961 0.85847 1.41086 0.92252 1.42264 1.05415 1.00272 1.89020 1.21155 0.94596 0.85906 0.97074 1.20374 0.90743 0.93594 0.85458 1.45859 1.10136 1.73276 1.06208 1.20974 0.88588 0.74845 0.85212 1.90587 1.16913 1.51964 1.86063 1.21582 0.98952 1.04246 0.92097 1.21266 0.96932 1.02003 0.92360 1.22189 0.94914 0.85185 0.94125 0.90302 1.22205 0.98731 1.02878 0.95081 1.21589 0.99534 0.96862 0.97540 1.22193 1.00510 0.98203 0.98457 1.22734 0.92104 1.01002 0.86526 1.88011 1.64230 1.35746 1.44756 1.21711 0.98144 0.99405 0.95947 1.21528 0.97168 0.93668 1.02591 1.21523 0.98597 0.97164 0.97691 1.21405 0.97277 0.96930 0.98668 1.21814 0.98431 0.93552 1.02183 0.94027 0.78930 0.96310 0.96992 0.75925 0.89899 0.86071 0.89238 0.94299 0.89373 0.92998 0.90520 0.90296 0.92730 0.88924 0.89177 0.91611 0.92993 0.90809 0.90531 0.91455 0.91756 0.90196 0.91200 0.92283 0.91308 0.92401 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -59.87 13.06 21.65 0.28 -59.58 16 2 C -0.07 -4.02 5.50 84.86 0.47 -3.55 16 3 Si 0.96 48.88 29.55 68.60 2.03 50.91 16 4 H -0.27 -13.46 7.11 99.48 0.71 -12.75 16 5 H -0.29 -14.16 7.11 99.48 0.71 -13.46 16 6 H -0.29 -14.87 7.11 99.48 0.71 -14.16 16 7 C -0.24 -14.58 9.99 84.03 0.84 -13.74 16 8 H 0.06 3.59 7.83 -2.91 -0.02 3.57 16 9 N -0.73 -38.99 5.18 -343.45 -1.78 -40.77 16 10 C 0.14 6.40 4.79 86.38 0.41 6.81 16 11 C 0.18 6.23 0.32 3.61 0.00 6.23 16 12 N -0.70 -22.53 3.58 -422.92 -1.51 -24.04 16 13 C 0.52 18.35 7.24 87.66 0.63 18.98 16 14 O -0.58 -24.63 12.28 -3.04 -0.04 -24.67 16 15 C -0.13 -3.74 5.60 29.85 0.17 -3.57 16 16 C -0.09 -2.53 4.21 30.60 0.13 -2.40 16 17 C 0.09 2.19 2.64 30.62 0.08 2.27 16 18 H 0.08 1.47 8.14 -2.39 -0.02 1.46 16 19 C -0.15 -3.05 5.42 30.68 0.17 -2.88 16 20 C -0.12 -1.85 6.03 30.71 0.19 -1.66 16 21 C -0.16 -2.72 6.14 30.68 0.19 -2.53 16 22 C 0.05 1.09 6.84 72.01 0.49 1.59 16 23 O -0.41 -11.73 9.94 -148.98 -1.48 -13.21 16 24 C -0.11 -3.37 4.67 30.60 0.14 -3.22 16 25 C -0.11 -2.35 5.75 30.60 0.18 -2.17 16 26 C -0.11 -2.06 5.92 30.59 0.18 -1.88 16 27 C -0.11 -2.30 5.77 30.59 0.18 -2.12 16 28 C -0.12 -3.56 4.58 30.59 0.14 -3.42 16 29 H 0.25 15.09 8.31 -92.71 -0.77 14.32 16 30 H 0.38 20.66 6.46 -92.71 -0.60 20.06 16 31 H 0.02 0.98 6.25 -2.39 -0.01 0.96 16 32 H 0.01 0.56 8.14 -2.38 -0.02 0.54 16 33 H 0.40 11.04 7.20 -92.70 -0.67 10.38 16 34 H 0.08 2.78 7.82 -2.39 -0.02 2.76 16 35 H 0.12 2.47 8.14 -2.39 -0.02 2.45 16 36 H 0.09 2.35 8.10 -2.39 -0.02 2.33 16 37 H 0.04 1.43 8.10 -2.38 -0.02 1.41 16 38 H 0.09 1.47 8.14 -2.39 -0.02 1.45 16 39 H 0.05 1.26 8.14 -2.39 -0.02 1.24 16 40 H 0.08 1.04 8.14 -2.38 -0.02 1.02 16 41 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 42 H 0.05 1.13 8.14 -2.39 -0.02 1.11 16 43 H 0.09 1.19 8.14 -2.39 -0.02 1.17 16 44 H 0.09 1.85 8.14 -2.39 -0.02 1.83 16 45 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 46 H 0.05 1.82 7.11 -2.39 -0.02 1.81 16 47 H 0.07 2.16 8.14 -2.38 -0.02 2.14 16 48 H 0.08 1.42 8.14 -2.39 -0.02 1.40 16 49 H 0.07 1.32 6.79 -2.39 -0.02 1.30 16 50 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 51 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 52 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 53 H 0.06 1.31 7.61 -2.38 -0.02 1.29 16 54 H 0.07 1.93 8.14 -2.39 -0.02 1.91 16 55 H 0.06 2.02 6.28 -2.39 -0.01 2.00 16 Total: -1.00 -75.10 412.60 1.67 -73.43 By element: Atomic # 1 Polarization: 45.61 SS G_CDS: -0.41 Total: 45.21 kcal Atomic # 6 Polarization: -11.86 SS G_CDS: 4.58 Total: -7.27 kcal Atomic # 7 Polarization: -121.38 SS G_CDS: -3.01 Total: -124.40 kcal Atomic # 8 Polarization: -36.36 SS G_CDS: -1.52 Total: -37.88 kcal Atomic # 14 Polarization: 48.88 SS G_CDS: 2.03 Total: 50.91 kcal Total: -75.10 1.67 -73.43 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001734094251.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.509 kcal (2) G-P(sol) polarization free energy of solvation -75.101 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.611 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.670 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.431 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.941 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds