Wall clock time and date at job start Tue Mar 31 2020 21:46:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86800 * 119.99888 * 2 1 4 4 H 1.48505 * 109.47013 * 270.00148 * 3 2 1 5 5 H 1.48499 * 109.47240 * 30.00238 * 3 2 1 6 6 H 1.48497 * 109.47224 * 150.00564 * 3 2 1 7 7 C 1.38812 * 119.99985 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99681 * 157.22778 * 7 2 1 9 9 N 1.36935 * 119.99968 * 337.21978 * 7 2 1 10 10 C 1.46494 * 120.00327 * 326.29959 * 9 7 2 11 11 C 1.53002 * 109.47384 * 264.41476 * 10 9 7 12 12 O 1.42900 * 109.47055 * 64.99934 * 11 10 9 13 13 C 1.46505 * 119.99793 * 146.29821 * 9 7 2 14 14 C 1.53035 * 109.46141 * 300.00074 * 13 9 7 15 15 C 1.53191 * 109.31195 * 181.38180 * 14 13 9 16 16 N 1.46921 * 108.78021 * 305.36613 * 15 14 13 17 17 C 1.34767 * 120.63492 * 233.58206 * 16 15 14 18 18 O 1.21284 * 119.99797 * 0.02562 * 17 16 15 19 19 C 1.50698 * 120.00415 * 179.97438 * 17 16 15 20 20 C 1.52998 * 109.47335 * 180.02562 * 19 17 16 21 21 C 1.53007 * 109.47154 * 179.97438 * 20 19 17 22 22 C 1.54266 * 110.03327 * 292.91071 * 21 20 19 23 23 C 1.54967 * 104.15671 * 217.13390 * 22 21 20 24 24 C 1.54890 * 102.77648 * 37.88899 * 23 22 21 25 25 C 1.53876 * 110.03087 * 175.68742 * 21 20 19 26 26 C 1.46927 * 118.73335 * 53.85952 * 16 15 14 27 27 C 1.53038 * 109.45827 * 60.07060 * 13 9 7 28 28 H 0.97003 * 120.00103 * 359.97438 * 1 2 3 29 29 H 1.09006 * 109.46750 * 24.41355 * 10 9 7 30 30 H 1.09004 * 109.47393 * 144.41211 * 10 9 7 31 31 H 1.09004 * 109.47106 * 184.99791 * 11 10 9 32 32 H 1.09000 * 109.46824 * 304.99841 * 11 10 9 33 33 H 0.96694 * 114.00182 * 180.02562 * 12 11 10 34 34 H 1.09004 * 109.45584 * 180.02562 * 13 9 7 35 35 H 1.09001 * 109.49472 * 61.43641 * 14 13 9 36 36 H 1.08990 * 109.52539 * 301.35458 * 14 13 9 37 37 H 1.09000 * 109.58411 * 185.57693 * 15 14 13 38 38 H 1.09007 * 109.70089 * 65.22697 * 15 14 13 39 39 H 1.09001 * 109.47158 * 300.00177 * 19 17 16 40 40 H 1.09006 * 109.46822 * 60.00198 * 19 17 16 41 41 H 1.09001 * 109.47426 * 299.99907 * 20 19 17 42 42 H 1.08997 * 109.47408 * 60.00099 * 20 19 17 43 43 H 1.09005 * 110.01526 * 54.30222 * 21 20 19 44 44 H 1.08997 * 110.48259 * 335.77731 * 22 21 20 45 45 H 1.08993 * 110.48325 * 98.42589 * 22 21 20 46 46 H 1.08998 * 110.71862 * 279.57447 * 23 22 21 47 47 H 1.08994 * 110.91882 * 156.29354 * 23 22 21 48 48 H 1.09000 * 110.48278 * 203.40658 * 24 23 22 49 49 H 1.09001 * 110.60364 * 80.81895 * 24 23 22 50 50 H 1.08999 * 110.03192 * 238.57092 * 25 21 20 51 51 H 1.08997 * 110.03434 * 0.02562 * 25 21 20 52 52 H 1.09000 * 109.58794 * 65.93178 * 26 16 15 53 53 H 1.09007 * 109.58323 * 186.35268 * 26 16 15 54 54 H 1.09002 * 109.49875 * 298.56421 * 27 13 9 55 55 H 1.09001 * 109.49818 * 58.66232 * 27 13 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4976 2.0464 -1.4001 5 1 1.4476 2.6527 0.7001 6 1 3.5477 1.4402 0.6999 7 6 2.0102 -1.2022 -0.0005 8 1 3.0271 -1.2384 -0.3626 9 7 1.4057 -2.3420 0.4581 10 6 0.4399 -2.2676 1.5571 11 6 1.1489 -2.5637 2.8802 12 8 2.1061 -1.5370 3.1479 13 6 1.7247 -3.6360 -0.1503 14 6 1.3686 -3.6015 -1.6382 15 6 1.6712 -4.9668 -2.2634 16 7 3.0716 -5.3141 -1.9861 17 6 3.9076 -5.6491 -2.9886 18 8 3.5061 -5.6654 -4.1330 19 6 5.3414 -6.0022 -2.6880 20 6 6.0676 -6.3399 -3.9917 21 6 7.5236 -6.6978 -3.6865 22 6 8.2768 -5.4539 -3.1715 23 6 9.6926 -5.5862 -3.7876 24 6 9.4005 -6.1549 -5.1984 25 6 8.2378 -7.1438 -4.9744 26 6 3.5416 -5.2953 -0.5941 27 6 3.2196 -3.9208 0.0118 28 1 -0.4850 0.8401 0.0004 29 1 0.0066 -1.2680 1.5929 30 1 -0.3506 -3.0007 1.3965 31 1 0.4157 -2.5960 3.6861 32 1 1.6571 -3.5256 2.8126 33 1 2.5948 -1.6603 3.9731 34 1 1.1502 -4.4204 0.3426 35 1 1.9610 -2.8340 -2.1363 36 1 0.3087 -3.3752 -1.7540 37 1 1.5132 -4.9185 -3.3408 38 1 1.0148 -5.7224 -1.8315 39 1 5.8315 -5.1548 -2.2085 40 1 5.3712 -6.8641 -2.0213 41 1 5.5777 -7.1871 -4.4716 42 1 6.0378 -5.4779 -4.6580 43 1 7.5641 -7.4935 -2.9425 44 1 7.7922 -4.5426 -3.5216 45 1 8.3311 -5.4644 -2.0830 46 1 10.3014 -6.2812 -3.2093 47 1 10.1794 -4.6134 -3.8565 48 1 10.2749 -6.6762 -5.5880 49 1 9.0982 -5.3583 -5.8781 50 1 8.6257 -8.1554 -4.8551 51 1 7.5474 -7.1048 -5.8169 52 1 3.0347 -6.0758 -0.0267 53 1 4.6183 -5.4637 -0.5698 54 1 3.7945 -3.1503 -0.5019 55 1 3.4770 -3.9221 1.0709 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001750945318.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:46:59 Heat of formation + Delta-G solvation = -108.378345 kcal Electronic energy + Delta-G solvation = -30984.207105 eV Core-core repulsion = 27019.689782 eV Total energy + Delta-G solvation = -3964.517323 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -41.23107 -39.44281 -38.87815 -37.61381 -36.20416 -34.26710 -33.67973 -32.15733 -31.80191 -29.66754 -29.46257 -28.81591 -26.53131 -25.03211 -24.45569 -23.48333 -22.24288 -21.57640 -21.31244 -20.42442 -19.86810 -18.40130 -18.16336 -17.75257 -16.98673 -16.79116 -16.68871 -16.30049 -16.04037 -15.80639 -15.57686 -15.16105 -14.96715 -14.78624 -14.39597 -14.33188 -14.16088 -14.03133 -13.69970 -13.53822 -13.32055 -13.05957 -13.02684 -12.93385 -12.72910 -12.53418 -12.36473 -12.26923 -12.09771 -11.93283 -11.83232 -11.82181 -11.65779 -11.58964 -11.47308 -11.46187 -11.39627 -11.17329 -11.11804 -10.73185 -10.58695 -10.36050 -9.58491 -8.48211 -7.74592 -5.25538 1.42820 1.46317 1.55168 1.67747 2.10637 2.56970 3.36080 3.52401 3.59930 3.71643 3.79718 3.86108 3.92096 3.99462 4.18276 4.19421 4.24351 4.27396 4.37663 4.47154 4.59417 4.60417 4.62345 4.64081 4.68580 4.73593 4.74763 4.78623 4.83717 4.84089 4.86190 4.90864 4.95328 4.96816 5.03068 5.12062 5.12570 5.14103 5.23631 5.24088 5.26964 5.32709 5.44395 5.49325 5.52202 5.61168 5.62780 5.69361 5.76444 5.88010 6.51331 6.54192 7.23008 7.24039 7.30393 8.00583 8.46200 9.23614 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.012899 B = 0.002716 C = 0.002568 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2170.121293 B =10306.628195 C =10899.545457 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C -0.040 4.040 3 Si 0.941 3.059 4 H -0.294 1.294 5 H -0.297 1.297 6 H -0.276 1.276 7 C -0.217 4.217 8 H 0.046 0.954 9 N -0.584 5.584 10 C 0.133 3.867 11 C 0.070 3.930 12 O -0.576 6.576 13 C 0.172 3.828 14 C -0.121 4.121 15 C 0.122 3.878 16 N -0.609 5.609 17 C 0.504 3.496 18 O -0.595 6.595 19 C -0.130 4.130 20 C -0.090 4.090 21 C -0.086 4.086 22 C -0.126 4.126 23 C -0.125 4.125 24 C -0.128 4.128 25 C -0.123 4.123 26 C 0.114 3.886 27 C -0.129 4.129 28 H 0.244 0.756 29 H 0.066 0.934 30 H 0.044 0.956 31 H 0.043 0.957 32 H 0.045 0.955 33 H 0.375 0.625 34 H 0.068 0.932 35 H 0.029 0.971 36 H 0.047 0.953 37 H 0.065 0.935 38 H 0.084 0.916 39 H 0.105 0.895 40 H 0.123 0.877 41 H 0.057 0.943 42 H 0.044 0.956 43 H 0.089 0.911 44 H 0.052 0.948 45 H 0.077 0.923 46 H 0.076 0.924 47 H 0.063 0.937 48 H 0.072 0.928 49 H 0.054 0.946 50 H 0.073 0.927 51 H 0.054 0.946 52 H 0.093 0.907 53 H 0.111 0.889 54 H 0.038 0.962 55 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.107 -18.063 0.838 23.562 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.235 4.235 3 Si 0.772 3.228 4 H -0.221 1.221 5 H -0.223 1.223 6 H -0.202 1.202 7 C -0.348 4.348 8 H 0.063 0.937 9 N -0.304 5.304 10 C 0.007 3.993 11 C -0.009 4.009 12 O -0.381 6.381 13 C 0.066 3.934 14 C -0.162 4.162 15 C -0.002 4.002 16 N -0.341 5.341 17 C 0.294 3.706 18 O -0.477 6.477 19 C -0.170 4.170 20 C -0.128 4.128 21 C -0.104 4.104 22 C -0.163 4.163 23 C -0.162 4.162 24 C -0.165 4.165 25 C -0.161 4.161 26 C -0.008 4.008 27 C -0.169 4.169 28 H 0.053 0.947 29 H 0.084 0.916 30 H 0.062 0.938 31 H 0.061 0.939 32 H 0.063 0.937 33 H 0.221 0.779 34 H 0.086 0.914 35 H 0.048 0.952 36 H 0.066 0.934 37 H 0.084 0.916 38 H 0.102 0.898 39 H 0.123 0.877 40 H 0.141 0.859 41 H 0.076 0.924 42 H 0.063 0.937 43 H 0.107 0.893 44 H 0.071 0.929 45 H 0.096 0.904 46 H 0.094 0.906 47 H 0.082 0.918 48 H 0.090 0.910 49 H 0.073 0.927 50 H 0.092 0.908 51 H 0.073 0.927 52 H 0.111 0.889 53 H 0.129 0.871 54 H 0.057 0.943 55 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 14.542 -17.708 -0.309 22.916 hybrid contribution -0.118 1.520 0.221 1.541 sum 14.423 -16.188 -0.089 21.682 Atomic orbital electron populations 1.70089 1.06406 1.25161 1.55316 1.25448 0.95436 1.00652 1.01985 0.85679 0.78715 0.81622 0.76791 1.22116 1.22317 1.20175 1.18808 0.93676 0.86881 1.35399 0.93676 1.43942 1.48937 1.02232 1.35254 1.21027 0.90684 1.02076 0.85501 1.22853 0.90773 0.89669 0.97626 1.86778 1.55965 1.50064 1.45330 1.20537 0.94504 0.87633 0.90769 1.22118 0.99975 0.95452 0.98612 1.21487 0.82220 0.95952 1.00528 1.48304 1.10865 1.66644 1.08271 1.21499 0.89355 0.75635 0.84068 1.90644 1.78896 1.55525 1.22629 1.21773 0.89412 1.04878 1.00919 1.21397 0.94879 1.00967 0.95578 1.21790 0.92753 0.98143 0.97743 1.22528 0.95564 0.97347 1.00869 1.22512 0.96741 1.01012 0.95940 1.22378 0.98264 0.98534 0.97344 1.22230 0.97102 0.99557 0.97204 1.22079 1.01820 0.97153 0.79746 1.22261 0.97566 0.96182 1.00856 0.94654 0.91599 0.93789 0.93871 0.93725 0.77915 0.91396 0.95172 0.93437 0.91643 0.89760 0.87732 0.85902 0.92399 0.93747 0.89313 0.92899 0.90448 0.90570 0.91793 0.90973 0.92709 0.90786 0.92693 0.88881 0.87115 0.94312 0.90562 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.88 11.36 21.65 0.25 -54.63 16 2 C -0.04 -2.26 4.90 84.86 0.42 -1.85 16 3 Si 0.94 47.13 29.61 68.60 2.03 49.16 16 4 H -0.29 -14.63 7.11 99.48 0.71 -13.92 16 5 H -0.30 -14.93 7.11 99.48 0.71 -14.23 16 6 H -0.28 -13.52 7.11 99.48 0.71 -12.81 16 7 C -0.22 -11.68 8.06 84.03 0.68 -11.00 16 8 H 0.05 2.51 6.87 -2.91 -0.02 2.49 16 9 N -0.58 -27.11 2.35 -677.88 -1.59 -28.70 16 10 C 0.13 5.97 5.57 86.38 0.48 6.45 16 11 C 0.07 2.49 7.39 71.98 0.53 3.02 16 12 O -0.58 -22.39 13.40 -148.98 -2.00 -24.38 16 13 C 0.17 6.37 2.59 45.01 0.12 6.48 16 14 C -0.12 -4.76 5.31 30.67 0.16 -4.60 16 15 C 0.12 3.87 6.43 86.36 0.56 4.43 16 16 N -0.61 -16.98 2.97 -818.07 -2.43 -19.40 16 17 C 0.50 14.64 7.70 87.66 0.67 15.32 16 18 O -0.60 -22.51 15.40 -3.04 -0.05 -22.56 16 19 C -0.13 -2.50 3.89 29.85 0.12 -2.39 16 20 C -0.09 -1.83 3.63 30.60 0.11 -1.72 16 21 C -0.09 -1.28 2.93 -10.07 -0.03 -1.31 16 22 C -0.13 -1.88 5.50 31.70 0.17 -1.71 16 23 C -0.12 -1.68 6.91 31.91 0.22 -1.46 16 24 C -0.13 -1.82 6.83 31.67 0.22 -1.61 16 25 C -0.12 -1.82 6.46 31.32 0.20 -1.62 16 26 C 0.11 2.46 6.37 86.51 0.55 3.01 16 27 C -0.13 -3.94 5.32 30.82 0.16 -3.78 16 28 H 0.24 14.29 8.31 -92.71 -0.77 13.52 16 29 H 0.07 3.58 5.35 -2.38 -0.01 3.56 16 30 H 0.04 1.82 8.04 -2.38 -0.02 1.81 16 31 H 0.04 1.32 8.14 -2.39 -0.02 1.30 16 32 H 0.04 1.37 8.14 -2.39 -0.02 1.35 16 33 H 0.37 9.97 9.12 -74.06 -0.68 9.30 16 34 H 0.07 2.24 7.87 -2.38 -0.02 2.22 16 35 H 0.03 1.39 7.71 -2.39 -0.02 1.37 16 36 H 0.05 2.04 8.14 -2.39 -0.02 2.02 16 37 H 0.07 2.33 7.01 -2.39 -0.02 2.32 16 38 H 0.08 2.27 8.14 -2.38 -0.02 2.25 16 39 H 0.10 1.83 7.04 -2.39 -0.02 1.81 16 40 H 0.12 1.57 7.93 -2.38 -0.02 1.55 16 41 H 0.06 1.28 8.10 -2.39 -0.02 1.26 16 42 H 0.04 1.12 7.98 -2.39 -0.02 1.10 16 43 H 0.09 1.05 8.14 -2.38 -0.02 1.03 16 44 H 0.05 0.97 7.77 -2.39 -0.02 0.95 16 45 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 46 H 0.08 0.87 8.14 -2.39 -0.02 0.85 16 47 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 48 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 49 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16 50 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 51 H 0.05 0.93 7.67 -2.39 -0.02 0.91 16 52 H 0.09 1.58 8.14 -2.39 -0.02 1.56 16 53 H 0.11 1.71 5.93 -2.38 -0.01 1.69 16 54 H 0.04 1.42 7.03 -2.39 -0.02 1.41 16 55 H 0.08 2.22 8.14 -2.39 -0.02 2.21 16 Total: -1.00 -73.30 417.77 1.73 -71.57 By element: Atomic # 1 Polarization: 23.11 SS G_CDS: 0.17 Total: 23.28 kcal Atomic # 6 Polarization: 0.33 SS G_CDS: 5.34 Total: 5.67 kcal Atomic # 7 Polarization: -98.97 SS G_CDS: -3.77 Total: -102.74 kcal Atomic # 8 Polarization: -44.90 SS G_CDS: -2.04 Total: -46.94 kcal Atomic # 14 Polarization: 47.13 SS G_CDS: 2.03 Total: 49.16 kcal Total: -73.30 1.73 -71.57 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001750945318.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.811 kcal (2) G-P(sol) polarization free energy of solvation -73.300 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.111 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.733 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.567 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.378 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds