Wall clock time and date at job start Tue Mar 31 2020 20:49:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46490 * 1 3 3 C 1.36943 * 120.00133 * 2 1 4 4 H 1.07999 * 120.00147 * 202.43224 * 3 2 1 5 5 C 1.38814 * 119.99500 * 22.42703 * 3 2 1 6 6 N 1.31617 * 120.00409 * 13.77639 * 5 3 2 7 7 Si 1.86810 * 119.99593 * 193.77334 * 5 3 2 8 8 H 1.48500 * 109.47185 * 0.02562 * 7 5 3 9 9 H 1.48490 * 109.46865 * 120.00128 * 7 5 3 10 10 H 1.48504 * 109.46937 * 240.00252 * 7 5 3 11 11 C 1.46502 * 120.00217 * 179.97438 * 2 1 3 12 12 C 1.52997 * 109.47001 * 90.00313 * 11 2 1 13 13 H 1.08998 * 109.49418 * 304.93255 * 12 11 2 14 14 C 1.53041 * 109.52313 * 184.85477 * 12 11 2 15 15 C 1.53042 * 109.53956 * 178.66450 * 14 12 11 16 16 C 1.52764 * 109.38154 * 61.24057 * 15 14 12 17 17 N 1.46923 * 109.00534 * 305.59088 * 16 15 14 18 18 C 1.34779 * 120.62801 * 233.58242 * 17 16 15 19 19 O 1.21284 * 120.00138 * 179.71981 * 18 17 16 20 20 C 1.50700 * 120.00187 * 359.72199 * 18 17 16 21 21 N 1.46900 * 109.47586 * 180.02562 * 20 18 17 22 22 C 1.47183 * 111.00042 * 169.99951 * 21 20 18 23 23 C 1.52984 * 108.73098 * 54.37139 * 22 21 20 24 24 N 1.46005 * 110.04538 * 50.28859 * 23 22 21 25 25 C 1.33716 * 122.92671 * 341.84052 * 24 23 22 26 26 O 1.21278 * 118.62749 * 181.68843 * 25 24 23 27 27 C 1.46904 * 110.99765 * 292.89495 * 21 20 18 28 28 C 1.46923 * 118.74460 * 53.31061 * 17 16 15 29 29 H 1.09004 * 109.47068 * 275.13290 * 1 2 3 30 30 H 1.08999 * 109.47208 * 35.13295 * 1 2 3 31 31 H 1.08997 * 109.46880 * 155.13337 * 1 2 3 32 32 H 0.97001 * 119.99669 * 179.97438 * 6 5 3 33 33 H 1.09000 * 109.47155 * 329.99638 * 11 2 1 34 34 H 1.08998 * 109.47157 * 210.00256 * 11 2 1 35 35 H 1.09000 * 109.46211 * 298.68836 * 14 12 11 36 36 H 1.09006 * 109.45768 * 58.64451 * 14 12 11 37 37 H 1.08998 * 109.49623 * 181.31834 * 15 14 12 38 38 H 1.08999 * 109.49353 * 301.38308 * 15 14 12 39 39 H 1.08998 * 109.50789 * 185.70959 * 16 15 14 40 40 H 1.08994 * 109.42912 * 65.42484 * 16 15 14 41 41 H 1.09000 * 109.46855 * 59.99548 * 20 18 17 42 42 H 1.09001 * 109.46905 * 300.00339 * 20 18 17 43 43 H 1.09001 * 109.59757 * 174.14178 * 22 21 20 44 44 H 1.09001 * 109.59645 * 294.44351 * 22 21 20 45 45 H 1.08996 * 109.37594 * 170.47084 * 23 22 21 46 46 H 1.09009 * 109.36976 * 290.22933 * 23 22 21 47 47 H 0.96998 * 118.54013 * 161.82401 * 24 23 22 48 48 H 1.09000 * 109.38610 * 47.07973 * 27 21 20 49 49 H 1.08991 * 109.38375 * 166.77763 * 27 21 20 50 50 H 1.09001 * 109.58407 * 66.42744 * 28 17 16 51 51 H 1.09001 * 109.58879 * 186.85240 * 28 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1496 1.1859 0.0000 4 1 3.1683 1.2213 -0.3569 5 6 1.5342 2.3426 0.4587 6 7 0.4097 2.2647 1.1381 7 14 2.3023 4.0098 0.1115 8 1 3.5544 3.8258 -0.6654 9 1 1.3517 4.8391 -0.6718 10 1 2.6110 4.6895 1.3952 11 6 2.1975 -1.2687 0.0006 12 6 2.4525 -1.7110 -1.4417 13 1 1.5063 -1.7570 -1.9808 14 6 3.1096 -3.0931 -1.4442 15 6 3.3346 -3.5503 -2.8874 16 6 4.2703 -2.5684 -3.5902 17 7 3.7212 -1.2113 -3.4653 18 6 3.5259 -0.4464 -4.5576 19 8 3.0672 0.6704 -4.4418 20 6 3.8774 -0.9787 -5.9230 21 7 3.5739 0.0386 -6.9383 22 6 4.1191 -0.3464 -8.2501 23 6 3.6013 -1.7409 -8.6073 24 7 2.1514 -1.7934 -8.4437 25 6 1.4686 -0.8992 -7.7210 26 8 0.2684 -1.0349 -7.6118 27 6 2.1262 0.2669 -7.0385 28 6 3.3835 -0.7062 -2.1276 29 1 -0.3633 0.0919 1.0236 30 1 -0.3633 0.8404 -0.5914 31 1 -0.3633 -0.9324 -0.4321 32 1 -0.0200 3.0730 1.4589 33 1 1.6084 -2.0281 0.5148 34 1 3.1498 -1.1381 0.5144 35 1 4.0673 -3.0409 -0.9264 36 1 2.4600 -3.8050 -0.9349 37 1 3.7811 -4.5446 -2.8885 38 1 2.3800 -3.5795 -3.4126 39 1 4.3517 -2.8341 -4.6441 40 1 5.2547 -2.6086 -3.1239 41 1 3.2947 -1.8778 -6.1234 42 1 4.9399 -1.2195 -5.9566 43 1 3.7937 0.3689 -9.0055 44 1 5.2081 -0.3591 -8.2040 45 1 3.8569 -1.9673 -9.6424 46 1 4.0646 -2.4777 -7.9510 47 1 1.6615 -2.5086 -8.8788 48 1 1.7083 0.3835 -6.0386 49 1 1.9420 1.1739 -7.6141 50 1 4.2941 -0.5914 -1.5397 51 1 2.8800 0.2565 -2.2169 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001752518746.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:49:51 Heat of formation + Delta-G solvation = -26.861561 kcal Electronic energy + Delta-G solvation = -31616.547304 eV Core-core repulsion = 27552.024470 eV Total energy + Delta-G solvation = -4064.522834 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 1.55 seconds Orbital eigenvalues (eV) -41.11786 -39.77944 -37.88534 -37.08386 -35.46470 -34.38821 -33.00970 -31.60400 -30.30580 -30.13947 -29.04831 -25.95860 -25.90629 -25.38509 -24.62901 -23.07334 -22.49572 -20.97245 -20.11924 -19.40708 -18.61711 -17.68008 -17.43717 -16.68658 -16.48261 -16.09618 -15.61118 -15.31022 -15.15125 -14.84729 -14.68623 -14.39972 -14.15596 -13.90348 -13.65503 -13.42592 -13.18988 -13.05108 -12.93929 -12.83157 -12.55494 -12.24907 -11.93484 -11.87490 -11.69353 -11.63782 -11.15682 -10.99698 -10.78083 -10.72942 -10.66482 -10.52296 -10.30082 -10.21124 -10.08996 -9.78881 -9.59338 -9.49968 -9.47845 -8.60221 -8.42252 -8.33175 -6.62944 -5.61106 -3.06958 2.35899 2.76699 2.81551 3.05110 3.48596 3.56743 3.60147 3.61323 4.15753 4.41255 4.45831 4.47505 4.60951 4.71794 4.79724 4.88706 4.97231 5.00882 5.07573 5.10416 5.25560 5.34071 5.37439 5.42246 5.48965 5.58008 5.65107 5.77079 5.83229 5.92273 6.11578 6.13550 6.21392 6.25838 6.33274 6.44712 6.51568 6.53865 6.63846 6.79289 6.86819 6.92365 6.93091 7.03318 7.49641 7.65404 7.82419 7.89963 7.91846 8.42688 8.50328 9.34670 9.98891 10.47193 11.43595 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.011730 B = 0.003672 C = 0.003252 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2386.442456 B = 7624.134810 C = 8609.077651 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.164 3.836 2 N -0.602 5.602 3 C -0.250 4.250 4 H 0.070 0.930 5 C 0.003 3.997 6 N -0.907 5.907 7 Si 0.899 3.101 8 H -0.277 1.277 9 H -0.289 1.289 10 H -0.292 1.292 11 C 0.159 3.841 12 C -0.121 4.121 13 H 0.065 0.935 14 C -0.114 4.114 15 C -0.134 4.134 16 C 0.108 3.892 17 N -0.612 5.612 18 C 0.508 3.492 19 O -0.511 6.511 20 C 0.029 3.971 21 N -0.506 5.506 22 C 0.036 3.964 23 C 0.071 3.929 24 N -0.728 5.728 25 C 0.486 3.514 26 O -0.545 6.545 27 C 0.036 3.964 28 C 0.123 3.877 29 H 0.030 0.970 30 H 0.040 0.960 31 H -0.005 1.005 32 H 0.250 0.750 33 H 0.038 0.962 34 H 0.047 0.953 35 H 0.061 0.939 36 H 0.061 0.939 37 H 0.069 0.931 38 H 0.062 0.938 39 H 0.072 0.928 40 H 0.068 0.932 41 H 0.064 0.936 42 H 0.107 0.893 43 H 0.091 0.909 44 H 0.102 0.898 45 H 0.084 0.916 46 H 0.068 0.932 47 H 0.398 0.602 48 H 0.132 0.868 49 H 0.117 0.883 50 H 0.059 0.941 51 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.569 -14.445 -18.932 26.475 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 N -0.324 5.324 3 C -0.380 4.380 4 H 0.088 0.912 5 C -0.195 4.195 6 N -0.553 5.553 7 Si 0.729 3.271 8 H -0.202 1.202 9 H -0.216 1.216 10 H -0.220 1.220 11 C 0.030 3.970 12 C -0.143 4.143 13 H 0.083 0.917 14 C -0.152 4.152 15 C -0.172 4.172 16 C -0.015 4.015 17 N -0.346 5.346 18 C 0.295 3.705 19 O -0.385 6.385 20 C -0.102 4.102 21 N -0.229 5.229 22 C -0.093 4.093 23 C -0.055 4.055 24 N -0.383 5.383 25 C 0.271 3.729 26 O -0.420 6.420 27 C -0.095 4.095 28 C 0.002 3.998 29 H 0.048 0.952 30 H 0.059 0.941 31 H 0.014 0.986 32 H 0.060 0.940 33 H 0.056 0.944 34 H 0.065 0.935 35 H 0.080 0.920 36 H 0.080 0.920 37 H 0.088 0.912 38 H 0.081 0.919 39 H 0.091 0.909 40 H 0.086 0.914 41 H 0.082 0.918 42 H 0.125 0.875 43 H 0.110 0.890 44 H 0.120 0.880 45 H 0.102 0.898 46 H 0.086 0.914 47 H 0.233 0.767 48 H 0.149 0.851 49 H 0.134 0.866 50 H 0.077 0.923 51 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 10.918 -13.089 -18.451 25.119 hybrid contribution -0.092 -0.365 -0.706 0.800 sum 10.825 -13.453 -19.157 25.791 Atomic orbital electron populations 1.20760 0.82754 0.95300 0.99271 1.43897 1.01791 1.00639 1.86064 1.19203 0.97911 0.85399 1.35471 0.91240 1.24972 0.97868 0.98401 0.98253 1.70084 1.19607 1.26840 1.38741 0.86256 0.78848 0.84661 0.77301 1.20157 1.21609 1.21961 1.20701 0.96116 0.88616 0.91521 1.22258 0.98187 0.92966 1.00871 0.91700 1.21552 1.00942 0.97538 0.95181 1.21829 0.99902 0.97990 0.97467 1.21594 0.97130 0.82345 1.00471 1.48283 1.63780 1.14840 1.07743 1.20267 0.78950 0.85843 0.85485 1.90757 1.43079 1.18909 1.85802 1.22161 1.02988 0.93843 0.91178 1.62175 1.12456 1.43153 1.05128 1.22670 1.01514 0.94096 0.90980 1.22148 0.80651 0.99968 1.02716 1.45676 1.08346 1.31175 1.53057 1.21529 0.87983 0.84741 0.78598 1.90783 1.15135 1.74865 1.61261 1.22673 0.86512 0.95668 1.04636 1.21876 0.98332 1.00074 0.79483 0.95208 0.94125 0.98650 0.93953 0.94367 0.93471 0.92004 0.91989 0.91219 0.91884 0.90916 0.91373 0.91790 0.87516 0.89035 0.88001 0.89812 0.91392 0.76655 0.85054 0.86565 0.92310 0.86601 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 4.22 8.98 59.84 0.54 4.75 16 2 N -0.60 -15.29 2.81 -181.13 -0.51 -15.80 16 3 C -0.25 -6.95 8.24 -15.06 -0.12 -7.08 16 4 H 0.07 1.89 6.81 -52.49 -0.36 1.53 16 5 C 0.00 0.09 5.09 -17.43 -0.09 0.00 16 6 N -0.91 -27.35 10.72 55.49 0.59 -26.76 16 7 Si 0.90 23.04 29.58 -169.99 -5.03 18.01 16 8 H -0.28 -6.98 7.11 56.52 0.40 -6.58 16 9 H -0.29 -7.54 7.11 56.52 0.40 -7.14 16 10 H -0.29 -7.44 7.11 56.52 0.40 -7.04 16 11 C 0.16 3.21 5.15 -4.04 -0.02 3.19 16 12 C -0.12 -2.07 2.54 -90.50 -0.23 -2.30 16 13 H 0.06 1.26 8.14 -51.93 -0.42 0.83 16 14 C -0.11 -1.44 5.17 -26.69 -0.14 -1.58 16 15 C -0.13 -1.38 6.07 -26.83 -0.16 -1.54 16 16 C 0.11 1.08 6.31 -3.93 -0.02 1.06 16 17 N -0.61 -8.94 2.98 -173.04 -0.52 -9.46 16 18 C 0.51 7.90 7.30 -10.98 -0.08 7.82 16 19 O -0.51 -10.41 13.93 5.55 0.08 -10.34 16 20 C 0.03 0.30 2.85 -4.98 -0.01 0.29 16 21 N -0.51 -5.36 4.75 -237.55 -1.13 -6.49 16 22 C 0.04 0.22 6.03 -3.68 -0.02 0.20 16 23 C 0.07 0.35 6.46 -4.32 -0.03 0.32 16 24 N -0.73 -6.11 5.33 -61.06 -0.33 -6.43 16 25 C 0.49 6.20 7.06 -11.67 -0.08 6.12 16 26 O -0.54 -9.47 17.82 5.56 0.10 -9.38 16 27 C 0.04 0.45 5.49 -5.18 -0.03 0.43 16 28 C 0.12 2.23 4.66 -3.71 -0.02 2.21 16 29 H 0.03 0.82 7.35 -51.93 -0.38 0.44 16 30 H 0.04 1.14 7.32 -51.93 -0.38 0.76 16 31 H -0.01 -0.12 8.03 -51.93 -0.42 -0.53 16 32 H 0.25 7.33 8.31 -40.82 -0.34 6.99 16 33 H 0.04 0.73 8.07 -51.93 -0.42 0.31 16 34 H 0.05 0.94 8.04 -51.93 -0.42 0.53 16 35 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 36 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 37 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 38 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 39 H 0.07 0.54 5.93 -51.93 -0.31 0.23 16 40 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 41 H 0.06 0.62 5.77 -51.93 -0.30 0.32 16 42 H 0.11 0.80 7.89 -51.93 -0.41 0.39 16 43 H 0.09 0.53 8.08 -51.93 -0.42 0.11 16 44 H 0.10 0.42 8.14 -51.93 -0.42 0.00 16 45 H 0.08 0.22 8.14 -51.93 -0.42 -0.20 16 46 H 0.07 0.27 7.09 -51.92 -0.37 -0.09 16 47 H 0.40 2.96 8.84 -40.82 -0.36 2.60 16 48 H 0.13 2.17 5.88 -51.93 -0.31 1.87 16 49 H 0.12 1.34 8.14 -51.93 -0.42 0.92 16 50 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 51 H 0.12 2.67 5.41 -51.93 -0.28 2.39 16 LS Contribution 386.91 15.07 5.83 5.83 Total: -1.00 -36.51 386.91 -9.92 -46.43 By element: Atomic # 1 Polarization: 8.99 SS G_CDS: -8.49 Total: 0.50 kcal Atomic # 6 Polarization: 14.41 SS G_CDS: -0.52 Total: 13.88 kcal Atomic # 7 Polarization: -63.05 SS G_CDS: -1.88 Total: -64.93 kcal Atomic # 8 Polarization: -19.89 SS G_CDS: 0.18 Total: -19.71 kcal Atomic # 14 Polarization: 23.04 SS G_CDS: -5.03 Total: 18.01 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -36.51 -9.92 -46.43 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001752518746.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.565 kcal (2) G-P(sol) polarization free energy of solvation -36.509 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.944 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.917 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.427 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.862 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.56 seconds