Wall clock time and date at job start Tue Mar 31 2020 20:49:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46490 * 1 3 3 C 1.36943 * 120.00133 * 2 1 4 4 H 1.07999 * 120.00147 * 202.43224 * 3 2 1 5 5 C 1.38814 * 119.99500 * 22.42703 * 3 2 1 6 6 N 1.31617 * 120.00409 * 13.77639 * 5 3 2 7 7 Si 1.86810 * 119.99593 * 193.77334 * 5 3 2 8 8 H 1.48500 * 109.47185 * 0.02562 * 7 5 3 9 9 H 1.48490 * 109.46865 * 120.00128 * 7 5 3 10 10 H 1.48504 * 109.46937 * 240.00252 * 7 5 3 11 11 C 1.46502 * 120.00217 * 179.97438 * 2 1 3 12 12 C 1.52997 * 109.47001 * 90.00313 * 11 2 1 13 13 H 1.08998 * 109.49418 * 304.93255 * 12 11 2 14 14 C 1.53041 * 109.52313 * 184.85477 * 12 11 2 15 15 C 1.53042 * 109.53956 * 178.66450 * 14 12 11 16 16 C 1.52764 * 109.38154 * 61.24057 * 15 14 12 17 17 N 1.46923 * 109.00534 * 305.59088 * 16 15 14 18 18 C 1.34779 * 120.62801 * 233.58242 * 17 16 15 19 19 O 1.21284 * 120.00138 * 179.71981 * 18 17 16 20 20 C 1.50700 * 120.00187 * 359.72199 * 18 17 16 21 21 N 1.46900 * 109.47586 * 180.02562 * 20 18 17 22 22 C 1.47183 * 111.00042 * 169.99951 * 21 20 18 23 23 C 1.52984 * 108.73098 * 54.37139 * 22 21 20 24 24 N 1.46005 * 110.04538 * 50.28859 * 23 22 21 25 25 C 1.33716 * 122.92671 * 341.84052 * 24 23 22 26 26 O 1.21278 * 118.62749 * 181.68843 * 25 24 23 27 27 C 1.46904 * 110.99765 * 292.89495 * 21 20 18 28 28 C 1.46923 * 118.74460 * 53.31061 * 17 16 15 29 29 H 1.09004 * 109.47068 * 275.13290 * 1 2 3 30 30 H 1.08999 * 109.47208 * 35.13295 * 1 2 3 31 31 H 1.08997 * 109.46880 * 155.13337 * 1 2 3 32 32 H 0.97001 * 119.99669 * 179.97438 * 6 5 3 33 33 H 1.09000 * 109.47155 * 329.99638 * 11 2 1 34 34 H 1.08998 * 109.47157 * 210.00256 * 11 2 1 35 35 H 1.09000 * 109.46211 * 298.68836 * 14 12 11 36 36 H 1.09006 * 109.45768 * 58.64451 * 14 12 11 37 37 H 1.08998 * 109.49623 * 181.31834 * 15 14 12 38 38 H 1.08999 * 109.49353 * 301.38308 * 15 14 12 39 39 H 1.08998 * 109.50789 * 185.70959 * 16 15 14 40 40 H 1.08994 * 109.42912 * 65.42484 * 16 15 14 41 41 H 1.09000 * 109.46855 * 59.99548 * 20 18 17 42 42 H 1.09001 * 109.46905 * 300.00339 * 20 18 17 43 43 H 1.09001 * 109.59757 * 174.14178 * 22 21 20 44 44 H 1.09001 * 109.59645 * 294.44351 * 22 21 20 45 45 H 1.08996 * 109.37594 * 170.47084 * 23 22 21 46 46 H 1.09009 * 109.36976 * 290.22933 * 23 22 21 47 47 H 0.96998 * 118.54013 * 161.82401 * 24 23 22 48 48 H 1.09000 * 109.38610 * 47.07973 * 27 21 20 49 49 H 1.08991 * 109.38375 * 166.77763 * 27 21 20 50 50 H 1.09001 * 109.58407 * 66.42744 * 28 17 16 51 51 H 1.09001 * 109.58879 * 186.85240 * 28 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1496 1.1859 0.0000 4 1 3.1683 1.2213 -0.3569 5 6 1.5342 2.3426 0.4587 6 7 0.4097 2.2647 1.1381 7 14 2.3023 4.0098 0.1115 8 1 3.5544 3.8258 -0.6654 9 1 1.3517 4.8391 -0.6718 10 1 2.6110 4.6895 1.3952 11 6 2.1975 -1.2687 0.0006 12 6 2.4525 -1.7110 -1.4417 13 1 1.5063 -1.7570 -1.9808 14 6 3.1096 -3.0931 -1.4442 15 6 3.3346 -3.5503 -2.8874 16 6 4.2703 -2.5684 -3.5902 17 7 3.7212 -1.2113 -3.4653 18 6 3.5259 -0.4464 -4.5576 19 8 3.0672 0.6704 -4.4418 20 6 3.8774 -0.9787 -5.9230 21 7 3.5739 0.0386 -6.9383 22 6 4.1191 -0.3464 -8.2501 23 6 3.6013 -1.7409 -8.6073 24 7 2.1514 -1.7934 -8.4437 25 6 1.4686 -0.8992 -7.7210 26 8 0.2684 -1.0349 -7.6118 27 6 2.1262 0.2669 -7.0385 28 6 3.3835 -0.7062 -2.1276 29 1 -0.3633 0.0919 1.0236 30 1 -0.3633 0.8404 -0.5914 31 1 -0.3633 -0.9324 -0.4321 32 1 -0.0200 3.0730 1.4589 33 1 1.6084 -2.0281 0.5148 34 1 3.1498 -1.1381 0.5144 35 1 4.0673 -3.0409 -0.9264 36 1 2.4600 -3.8050 -0.9349 37 1 3.7811 -4.5446 -2.8885 38 1 2.3800 -3.5795 -3.4126 39 1 4.3517 -2.8341 -4.6441 40 1 5.2547 -2.6086 -3.1239 41 1 3.2947 -1.8778 -6.1234 42 1 4.9399 -1.2195 -5.9566 43 1 3.7937 0.3689 -9.0055 44 1 5.2081 -0.3591 -8.2040 45 1 3.8569 -1.9673 -9.6424 46 1 4.0646 -2.4777 -7.9510 47 1 1.6615 -2.5086 -8.8788 48 1 1.7083 0.3835 -6.0386 49 1 1.9420 1.1739 -7.6141 50 1 4.2941 -0.5914 -1.5397 51 1 2.8800 0.2565 -2.2169 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001752518746.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:49:50 Heat of formation + Delta-G solvation = -56.658948 kcal Electronic energy + Delta-G solvation = -31617.839415 eV Core-core repulsion = 27552.024470 eV Total energy + Delta-G solvation = -4065.814945 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -42.01790 -40.90614 -39.07268 -38.17822 -37.20187 -35.17951 -34.49909 -33.10026 -31.89012 -30.88467 -30.07419 -27.99425 -27.40935 -26.50159 -25.54497 -24.08735 -23.76859 -22.37334 -21.39878 -20.53107 -19.61957 -18.74354 -18.49113 -18.30684 -17.49576 -17.06368 -16.93565 -16.68493 -16.25129 -16.00959 -15.80043 -15.55520 -15.36355 -15.09013 -14.99253 -14.89916 -14.50298 -14.32399 -13.93581 -13.81250 -13.75987 -13.53526 -13.40726 -12.88006 -12.82818 -12.73100 -12.70037 -12.59938 -12.37352 -12.27722 -12.06224 -12.02827 -11.84864 -11.72694 -11.59703 -11.59077 -11.21495 -10.73482 -10.60565 -10.20870 -9.55100 -9.37251 -8.75112 -7.82362 -5.28835 1.37952 1.38886 1.43943 1.52672 1.66613 1.93722 2.14418 2.49344 2.78830 3.30849 3.47002 3.51327 3.66424 3.82124 3.92026 3.97395 4.00493 4.12566 4.13646 4.19548 4.23105 4.35552 4.42617 4.49786 4.55257 4.66347 4.68555 4.75040 4.78872 4.82521 4.86229 4.92795 4.97045 5.02302 5.04493 5.18122 5.20859 5.34679 5.45690 5.50029 5.58508 5.59242 5.65815 5.68475 5.77227 5.86576 6.12409 6.33352 6.54429 7.02675 7.15651 7.28706 7.88429 8.31961 9.21152 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.011730 B = 0.003672 C = 0.003252 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2386.442456 B = 7624.134810 C = 8609.077651 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.180 3.820 2 N -0.618 5.618 3 C -0.242 4.242 4 H 0.071 0.929 5 C -0.055 4.055 6 N -0.940 5.940 7 Si 0.955 3.045 8 H -0.272 1.272 9 H -0.299 1.299 10 H -0.285 1.285 11 C 0.155 3.845 12 C -0.106 4.106 13 H 0.035 0.965 14 C -0.108 4.108 15 C -0.128 4.128 16 C 0.101 3.899 17 N -0.613 5.613 18 C 0.493 3.507 19 O -0.575 6.575 20 C 0.043 3.957 21 N -0.522 5.522 22 C 0.033 3.967 23 C 0.067 3.933 24 N -0.710 5.710 25 C 0.487 3.513 26 O -0.605 6.605 27 C 0.042 3.958 28 C 0.131 3.869 29 H 0.009 0.991 30 H 0.005 0.995 31 H 0.023 0.977 32 H 0.245 0.755 33 H 0.052 0.948 34 H 0.051 0.949 35 H 0.077 0.923 36 H 0.071 0.929 37 H 0.110 0.890 38 H 0.048 0.952 39 H 0.110 0.890 40 H 0.091 0.909 41 H 0.078 0.922 42 H 0.151 0.849 43 H 0.093 0.907 44 H 0.134 0.866 45 H 0.120 0.880 46 H 0.093 0.907 47 H 0.405 0.595 48 H 0.084 0.916 49 H 0.117 0.883 50 H 0.061 0.939 51 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.423 -17.974 -21.391 31.914 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 N -0.341 5.341 3 C -0.373 4.373 4 H 0.089 0.911 5 C -0.250 4.250 6 N -0.588 5.588 7 Si 0.784 3.216 8 H -0.197 1.197 9 H -0.226 1.226 10 H -0.211 1.211 11 C 0.029 3.971 12 C -0.128 4.128 13 H 0.054 0.946 14 C -0.146 4.146 15 C -0.166 4.166 16 C -0.020 4.020 17 N -0.346 5.346 18 C 0.282 3.718 19 O -0.454 6.454 20 C -0.088 4.088 21 N -0.246 5.246 22 C -0.094 4.094 23 C -0.057 4.057 24 N -0.363 5.363 25 C 0.273 3.727 26 O -0.486 6.486 27 C -0.089 4.089 28 C 0.008 3.992 29 H 0.027 0.973 30 H 0.023 0.977 31 H 0.042 0.958 32 H 0.055 0.945 33 H 0.070 0.930 34 H 0.069 0.931 35 H 0.095 0.905 36 H 0.089 0.911 37 H 0.129 0.871 38 H 0.067 0.933 39 H 0.128 0.872 40 H 0.109 0.891 41 H 0.096 0.904 42 H 0.169 0.831 43 H 0.111 0.889 44 H 0.152 0.848 45 H 0.138 0.862 46 H 0.111 0.889 47 H 0.242 0.758 48 H 0.103 0.897 49 H 0.135 0.865 50 H 0.079 0.921 51 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 14.878 -16.718 -20.958 30.661 hybrid contribution -1.204 0.647 -0.004 1.367 sum 13.674 -16.072 -20.962 29.744 Atomic orbital electron populations 1.20455 0.83448 0.95167 0.97449 1.44132 1.01795 1.02028 1.86157 1.19466 0.97875 0.86516 1.33409 0.91134 1.25650 0.98778 1.01382 0.99161 1.70219 1.21006 1.27047 1.40484 0.85370 0.77916 0.81163 0.77110 1.19667 1.22615 1.21138 1.20952 0.95763 0.86578 0.93830 1.21980 0.97245 0.95878 0.97722 0.94599 1.21523 1.01252 0.94120 0.97734 1.21831 0.99734 0.99981 0.95096 1.22018 0.97609 0.79179 1.03226 1.48381 1.63372 1.16773 1.06072 1.21378 0.77679 0.85186 0.87548 1.90735 1.45794 1.21973 1.86878 1.22180 1.05510 0.93500 0.87584 1.62151 1.10487 1.44319 1.07618 1.22899 1.03164 0.94902 0.88395 1.22497 0.77867 0.99673 1.05632 1.45635 1.10108 1.29652 1.50866 1.21464 0.87187 0.85237 0.78804 1.90751 1.17643 1.76421 1.63776 1.22365 0.88380 0.96189 1.02008 1.21414 0.97857 0.97972 0.81988 0.97322 0.97658 0.95803 0.94520 0.92981 0.93085 0.90455 0.91053 0.87126 0.93328 0.87191 0.89126 0.90410 0.83112 0.88894 0.84760 0.86193 0.88908 0.75794 0.89745 0.86491 0.92113 0.92481 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 9.73 8.98 127.77 1.15 10.87 16 2 N -0.62 -32.61 2.81 -726.96 -2.04 -34.66 16 3 C -0.24 -14.01 8.24 84.03 0.69 -13.32 16 4 H 0.07 3.99 6.81 -2.91 -0.02 3.97 16 5 C -0.06 -3.33 5.09 84.86 0.43 -2.89 16 6 N -0.94 -59.30 10.72 21.65 0.23 -59.07 16 7 Si 0.95 49.45 29.58 68.60 2.03 51.48 16 8 H -0.27 -13.68 7.11 99.48 0.71 -12.98 16 9 H -0.30 -15.79 7.11 99.48 0.71 -15.09 16 10 H -0.28 -14.26 7.11 99.48 0.71 -13.55 16 11 C 0.15 6.28 5.15 86.38 0.45 6.73 16 12 C -0.11 -3.63 2.54 -10.72 -0.03 -3.66 16 13 H 0.04 1.43 8.14 -2.39 -0.02 1.41 16 14 C -0.11 -2.41 5.17 30.62 0.16 -2.26 16 15 C -0.13 -2.09 6.07 30.53 0.19 -1.90 16 16 C 0.10 1.56 6.31 86.22 0.54 2.11 16 17 N -0.61 -17.19 2.98 -819.75 -2.44 -19.63 16 18 C 0.49 15.25 7.30 87.66 0.64 15.89 16 19 O -0.57 -25.01 13.93 -3.04 -0.04 -25.05 16 20 C 0.04 0.75 2.85 85.56 0.24 1.00 16 21 N -0.52 -10.12 4.75 -905.47 -4.30 -14.42 16 22 C 0.03 0.27 6.03 86.24 0.52 0.79 16 23 C 0.07 0.31 6.46 86.47 0.56 0.87 16 24 N -0.71 -9.94 5.33 -466.08 -2.48 -12.42 16 25 C 0.49 12.41 7.06 87.69 0.62 13.03 16 26 O -0.61 -22.05 17.82 -3.02 -0.05 -22.11 16 27 C 0.04 1.11 5.49 85.42 0.47 1.58 16 28 C 0.13 4.81 4.66 86.36 0.40 5.21 16 29 H 0.01 0.49 7.35 -2.38 -0.02 0.48 16 30 H 0.00 0.28 7.32 -2.39 -0.02 0.26 16 31 H 0.02 1.11 8.03 -2.39 -0.02 1.09 16 32 H 0.25 15.07 8.31 -92.71 -0.77 14.30 16 33 H 0.05 1.96 8.07 -2.39 -0.02 1.94 16 34 H 0.05 2.02 8.04 -2.39 -0.02 2.00 16 35 H 0.08 1.54 8.14 -2.39 -0.02 1.52 16 36 H 0.07 1.49 8.14 -2.38 -0.02 1.47 16 37 H 0.11 1.03 8.14 -2.39 -0.02 1.01 16 38 H 0.05 0.96 8.14 -2.39 -0.02 0.94 16 39 H 0.11 0.93 5.93 -2.39 -0.01 0.91 16 40 H 0.09 1.09 8.14 -2.39 -0.02 1.07 16 41 H 0.08 1.18 5.77 -2.39 -0.01 1.17 16 42 H 0.15 1.34 7.89 -2.39 -0.02 1.32 16 43 H 0.09 0.76 8.08 -2.39 -0.02 0.74 16 44 H 0.13 0.30 8.14 -2.39 -0.02 0.28 16 45 H 0.12 -0.15 8.14 -2.39 -0.02 -0.17 16 46 H 0.09 0.10 7.09 -2.38 -0.02 0.08 16 47 H 0.41 4.90 8.84 -92.71 -0.82 4.08 16 48 H 0.08 3.10 5.88 -2.39 -0.01 3.08 16 49 H 0.12 2.92 8.14 -2.39 -0.02 2.90 16 50 H 0.06 2.16 8.14 -2.39 -0.02 2.14 16 51 H 0.06 2.81 5.41 -2.39 -0.01 2.79 16 Total: -1.00 -90.70 386.91 -1.96 -92.67 By element: Atomic # 1 Polarization: 9.06 SS G_CDS: 0.11 Total: 9.18 kcal Atomic # 6 Polarization: 27.01 SS G_CDS: 7.03 Total: 34.04 kcal Atomic # 7 Polarization: -129.16 SS G_CDS: -11.04 Total: -140.20 kcal Atomic # 8 Polarization: -47.07 SS G_CDS: -0.10 Total: -47.16 kcal Atomic # 14 Polarization: 49.45 SS G_CDS: 2.03 Total: 51.48 kcal Total: -90.70 -1.96 -92.67 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001752518746.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.009 kcal (2) G-P(sol) polarization free energy of solvation -90.705 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.695 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.963 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -92.668 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.659 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds