Wall clock time and date at job start Tue Mar 31 2020 20:54:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.46493 * 120.00235 * 2 1 4 4 C 1.53002 * 109.47273 * 269.99834 * 3 2 1 5 5 N 1.46894 * 109.47324 * 180.02562 * 4 3 2 6 6 C 1.46899 * 111.00222 * 180.02562 * 5 4 3 7 7 C 1.50699 * 109.47277 * 180.02562 * 6 5 4 8 8 O 1.21289 * 120.00038 * 359.97438 * 7 6 5 9 9 N 1.34778 * 120.00233 * 180.02562 * 7 6 5 10 10 C 1.37094 * 120.00231 * 179.97438 * 9 7 6 11 11 H 1.07997 * 119.99909 * 0.02562 * 10 9 7 12 12 C 1.38952 * 119.99821 * 179.97438 * 10 9 7 13 13 N 1.31405 * 120.00408 * 0.02562 * 12 10 9 14 14 Si 1.86805 * 119.99870 * 179.97438 * 12 10 9 15 15 H 1.48499 * 109.47010 * 0.02562 * 14 12 10 16 16 H 1.48504 * 109.46872 * 119.99873 * 14 12 10 17 17 H 1.48497 * 109.47107 * 240.00300 * 14 12 10 18 18 C 1.34779 * 119.99765 * 180.02562 * 2 1 3 19 19 O 1.21280 * 120.00078 * 184.91200 * 18 2 1 20 20 C 1.50702 * 119.99938 * 4.90025 * 18 2 1 21 21 C 1.54134 * 110.74998 * 300.07360 * 20 18 2 22 22 C 1.55161 * 102.88731 * 262.58656 * 21 20 18 23 23 C 1.54840 * 101.65357 * 323.83471 * 22 21 20 24 24 N 1.47855 * 110.77446 * 181.18654 * 20 18 2 25 25 C 1.47959 * 108.37593 * 238.96446 * 24 20 18 26 26 C 1.54842 * 105.06315 * 22.81235 * 25 24 20 27 27 C 1.54140 * 111.32921 * 61.92487 * 20 18 2 28 28 H 1.09002 * 109.47225 * 275.04463 * 1 2 3 29 29 H 1.09002 * 109.47335 * 35.04422 * 1 2 3 30 30 H 1.08998 * 109.47769 * 155.04228 * 1 2 3 31 31 H 1.08994 * 109.47265 * 30.00262 * 3 2 1 32 32 H 1.09009 * 109.47288 * 150.00099 * 3 2 1 33 33 H 1.09001 * 109.47203 * 300.00021 * 4 3 2 34 34 H 1.09000 * 109.46923 * 59.99757 * 4 3 2 35 35 H 1.00904 * 111.00028 * 303.95829 * 5 4 3 36 36 H 1.08997 * 109.46644 * 299.99966 * 6 5 4 37 37 H 1.09000 * 109.47027 * 59.99948 * 6 5 4 38 38 H 0.97001 * 119.99554 * 359.97438 * 9 7 6 39 39 H 0.96995 * 120.00417 * 179.97438 * 13 12 10 40 40 H 1.08990 * 110.73279 * 144.23103 * 21 20 18 41 41 H 1.09005 * 110.72772 * 20.92852 * 21 20 18 42 42 H 1.08992 * 110.99792 * 81.92564 * 22 21 20 43 43 H 1.08998 * 110.99032 * 205.75025 * 22 21 20 44 44 H 1.09006 * 110.32337 * 155.57631 * 23 22 21 45 45 H 1.09000 * 110.32934 * 277.67846 * 23 22 21 46 46 H 1.08999 * 110.32654 * 141.71213 * 25 24 20 47 47 H 1.08995 * 110.31977 * 263.91821 * 25 24 20 48 48 H 1.08997 * 110.98728 * 205.23545 * 26 25 24 49 49 H 1.08999 * 110.98775 * 81.41959 * 26 25 24 50 50 H 1.09004 * 110.72530 * 216.11654 * 27 20 18 51 51 H 1.08997 * 110.72991 * 339.41094 * 27 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2686 0.0000 4 6 2.4526 1.7103 -1.4425 5 7 3.1876 2.9821 -1.4425 6 6 3.4504 3.4383 -2.8139 7 6 4.2048 4.7423 -2.7737 8 8 4.4946 5.2426 -1.7075 9 7 4.5566 5.3531 -3.9225 10 6 5.2424 6.5395 -3.8859 11 1 5.5012 6.9846 -2.9365 12 6 5.6055 7.1689 -5.0703 13 7 5.2911 6.6271 -6.2255 14 14 6.5394 8.7860 -5.0205 15 1 6.7690 9.1816 -3.6077 16 1 7.8461 8.6243 -5.7074 17 1 5.7460 9.8371 -5.7067 18 6 2.1388 -1.1673 -0.0005 19 8 3.3483 -1.1693 0.0894 20 6 1.3894 -2.4699 -0.1126 21 6 0.4012 -2.6339 1.0589 22 6 1.1893 -3.5259 2.0541 23 6 1.9572 -4.4651 1.0919 24 7 2.3212 -3.6168 -0.0643 25 6 2.1675 -4.3955 -1.3131 26 6 1.5733 -3.3988 -2.3383 27 6 0.6202 -2.5613 -1.4452 28 1 -0.3634 0.0904 1.0237 29 1 -0.3634 0.8414 -0.5901 30 1 -0.3634 -0.9316 -0.4336 31 1 1.6085 2.0283 0.5138 32 1 3.1500 1.1383 0.5139 33 1 3.0416 0.9507 -1.9563 34 1 1.5001 1.8406 -1.9564 35 1 2.6921 3.6862 -0.9162 36 1 4.0458 2.6905 -3.3377 37 1 2.5047 3.5812 -3.3368 38 1 4.3245 4.9531 -4.7752 39 1 5.5442 7.0666 -7.0523 40 1 -0.5087 -3.1349 0.7288 41 1 0.1700 -1.6674 1.5068 42 1 1.8793 -2.9297 2.6510 43 1 0.5110 -4.0915 2.6930 44 1 2.8545 -4.8511 1.5756 45 1 1.3162 -5.2872 0.7734 46 1 3.1370 -4.7576 -1.6552 47 1 1.4843 -5.2303 -1.1570 48 1 1.0190 -3.9232 -3.1165 49 1 2.3534 -2.7725 -2.7712 50 1 -0.3308 -3.0759 -1.3072 51 1 0.4652 -1.5696 -1.8701 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753207360.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:54:06 Heat of formation + Delta-G solvation = -42.368515 kcal Electronic energy + Delta-G solvation = -29946.085200 eV Core-core repulsion = 25880.889934 eV Total energy + Delta-G solvation = -4065.195266 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.45918 -38.85468 -38.20927 -36.25935 -35.04605 -34.39344 -33.80510 -32.12361 -31.19318 -29.63763 -28.54537 -27.12041 -25.96826 -25.91378 -24.06873 -22.59894 -22.28177 -21.18923 -21.05143 -19.27540 -18.94685 -17.85583 -17.06383 -16.58986 -16.44435 -16.19103 -15.72513 -15.47864 -15.26533 -14.60509 -14.45733 -14.37715 -14.07429 -13.87462 -13.72117 -13.46304 -13.37009 -13.24731 -13.11660 -12.99471 -12.72560 -12.32123 -12.17261 -12.01727 -11.94169 -11.65000 -11.53236 -11.48990 -11.46900 -11.34536 -11.24879 -11.09111 -10.93961 -10.81387 -10.31851 -10.19770 -9.78079 -9.49178 -8.86807 -8.71149 -8.41223 -8.03295 -7.92871 -6.38908 -3.79528 2.52176 2.66236 3.18695 3.28994 3.36694 3.57832 3.94155 3.96120 4.01854 4.16443 4.24959 4.36194 4.47894 4.49491 4.59221 4.68950 4.78399 4.92696 4.95059 5.01764 5.04184 5.13958 5.17634 5.21945 5.25053 5.28554 5.30216 5.31901 5.37189 5.42334 5.48250 5.49443 5.56630 5.65361 5.72070 5.77965 5.79585 5.90012 6.00613 6.04699 6.27720 6.33782 6.48548 6.60866 7.21660 7.24392 7.58337 7.68942 8.09649 8.16367 8.64444 9.20939 9.57471 10.09016 10.79014 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.024849 B = 0.001891 C = 0.001842 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1126.515617 B =14807.266524 C =15200.063497 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.065 3.935 2 N -0.619 5.619 3 C 0.118 3.882 4 C 0.048 3.952 5 N -0.665 5.665 6 C 0.053 3.947 7 C 0.442 3.558 8 O -0.582 6.582 9 N -0.565 5.565 10 C -0.298 4.298 11 H 0.104 0.896 12 C 0.021 3.979 13 N -0.902 5.902 14 Si 0.930 3.070 15 H -0.268 1.268 16 H -0.281 1.281 17 H -0.282 1.282 18 C 0.531 3.469 19 O -0.502 6.502 20 C 0.074 3.926 21 C -0.139 4.139 22 C -0.133 4.133 23 C 0.036 3.964 24 N -0.487 5.487 25 C 0.036 3.964 26 C -0.133 4.133 27 C -0.135 4.135 28 H 0.057 0.943 29 H 0.070 0.930 30 H 0.080 0.920 31 H 0.076 0.924 32 H 0.096 0.904 33 H 0.072 0.928 34 H 0.025 0.975 35 H 0.348 0.652 36 H 0.086 0.914 37 H 0.043 0.957 38 H 0.392 0.608 39 H 0.271 0.729 40 H 0.080 0.920 41 H 0.085 0.915 42 H 0.077 0.923 43 H 0.078 0.922 44 H 0.084 0.916 45 H 0.052 0.948 46 H 0.085 0.915 47 H 0.052 0.948 48 H 0.079 0.921 49 H 0.079 0.921 50 H 0.081 0.919 51 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.368 -24.439 10.330 31.712 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 N -0.355 5.355 3 C -0.004 4.004 4 C -0.082 4.082 5 N -0.298 5.298 6 C -0.080 4.080 7 C 0.227 3.773 8 O -0.466 6.466 9 N -0.201 5.201 10 C -0.427 4.427 11 H 0.122 0.878 12 C -0.181 4.181 13 N -0.544 5.544 14 Si 0.757 3.243 15 H -0.192 1.192 16 H -0.207 1.207 17 H -0.208 1.208 18 C 0.317 3.683 19 O -0.374 6.374 20 C -0.020 4.020 21 C -0.177 4.177 22 C -0.171 4.171 23 C -0.092 4.092 24 N -0.210 5.210 25 C -0.092 4.092 26 C -0.171 4.171 27 C -0.173 4.173 28 H 0.076 0.924 29 H 0.089 0.911 30 H 0.099 0.901 31 H 0.095 0.905 32 H 0.115 0.885 33 H 0.091 0.909 34 H 0.043 0.957 35 H 0.167 0.833 36 H 0.104 0.896 37 H 0.061 0.939 38 H 0.225 0.775 39 H 0.080 0.920 40 H 0.099 0.901 41 H 0.104 0.896 42 H 0.096 0.904 43 H 0.096 0.904 44 H 0.102 0.898 45 H 0.070 0.930 46 H 0.103 0.897 47 H 0.070 0.930 48 H 0.097 0.903 49 H 0.098 0.902 50 H 0.100 0.900 51 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -15.259 -24.163 11.041 30.636 hybrid contribution -1.504 0.594 -1.114 1.964 sum -16.763 -23.569 9.927 30.578 Atomic orbital electron populations 1.22147 0.80111 1.03642 1.01863 1.47748 1.06680 1.06014 1.75091 1.21381 0.98406 0.83689 0.96968 1.22262 0.96033 0.93195 0.96748 1.59932 1.51235 1.04918 1.13695 1.21654 0.99079 0.97216 0.90003 1.19799 0.85535 0.86902 0.85043 1.90522 1.59312 1.67137 1.29645 1.41868 1.50112 1.21402 1.06760 1.19760 1.30795 0.97598 0.94565 0.87845 1.25269 0.98221 0.99925 0.94652 1.69617 1.47234 1.40074 0.97463 0.85793 0.78857 0.81071 0.78581 1.19201 1.20746 1.20810 1.20105 0.87813 0.84033 0.76361 1.90729 1.13738 1.86501 1.46430 1.22208 0.91090 0.92022 0.96652 1.23162 0.97490 1.01768 0.95313 1.22786 0.98889 0.97807 0.97606 1.23310 0.99418 0.94882 0.91612 1.65028 1.47742 1.05518 1.02701 1.23310 1.01063 0.95245 0.89558 1.22795 0.98890 0.97815 0.97595 1.23056 0.98379 1.01931 0.93951 0.92409 0.91116 0.90149 0.90542 0.88544 0.90903 0.95726 0.83271 0.89582 0.93939 0.77469 0.91956 0.90102 0.89624 0.90430 0.90366 0.89775 0.92995 0.89685 0.93003 0.90270 0.90247 0.90020 0.89748 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.41 8.32 59.84 0.50 0.91 16 2 N -0.62 -6.39 2.81 -181.58 -0.51 -6.90 16 3 C 0.12 1.44 5.73 -4.04 -0.02 1.41 16 4 C 0.05 0.66 6.01 -3.83 -0.02 0.64 16 5 N -0.66 -11.40 6.13 -115.06 -0.70 -12.10 16 6 C 0.05 0.99 6.17 -4.98 -0.03 0.96 16 7 C 0.44 10.79 7.82 -10.99 -0.09 10.71 16 8 O -0.58 -16.27 15.78 5.55 0.09 -16.18 16 9 N -0.56 -14.70 5.29 -10.97 -0.06 -14.76 16 10 C -0.30 -8.48 9.68 -14.93 -0.14 -8.62 16 11 H 0.10 3.09 7.16 -52.49 -0.38 2.72 16 12 C 0.02 0.56 5.50 -17.47 -0.10 0.47 16 13 N -0.90 -24.95 13.05 55.50 0.72 -24.23 16 14 Si 0.93 21.40 29.55 -169.99 -5.02 16.38 16 15 H -0.27 -6.17 7.11 56.52 0.40 -5.76 16 16 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 17 H -0.28 -6.36 7.11 56.52 0.40 -5.95 16 18 C 0.53 6.65 6.50 -10.98 -0.07 6.58 16 19 O -0.50 -8.76 16.06 5.56 0.09 -8.67 16 20 C 0.07 0.67 0.62 -131.04 -0.08 0.59 16 21 C -0.14 -0.90 4.87 -25.00 -0.12 -1.02 16 22 C -0.13 -0.91 7.07 -24.62 -0.17 -1.09 16 23 C 0.04 0.28 6.72 -2.27 -0.02 0.26 16 24 N -0.49 -4.96 4.97 -214.06 -1.06 -6.03 16 25 C 0.04 0.29 6.72 -2.27 -0.02 0.28 16 26 C -0.13 -1.01 7.07 -24.62 -0.17 -1.18 16 27 C -0.13 -0.93 4.59 -24.99 -0.11 -1.05 16 28 H 0.06 0.29 7.27 -51.93 -0.38 -0.09 16 29 H 0.07 0.40 8.11 -51.93 -0.42 -0.03 16 30 H 0.08 0.40 3.82 -51.93 -0.20 0.20 16 31 H 0.08 0.78 8.07 -51.93 -0.42 0.36 16 32 H 0.10 1.44 7.36 -51.92 -0.38 1.06 16 33 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 34 H 0.02 0.30 8.14 -51.93 -0.42 -0.13 16 35 H 0.35 5.87 8.43 -39.29 -0.33 5.54 16 36 H 0.09 1.53 8.14 -51.93 -0.42 1.11 16 37 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 38 H 0.39 9.74 7.90 -40.82 -0.32 9.42 16 39 H 0.27 7.05 8.31 -40.82 -0.34 6.71 16 40 H 0.08 0.37 7.30 -51.93 -0.38 -0.01 16 41 H 0.09 0.53 5.39 -51.93 -0.28 0.25 16 42 H 0.08 0.66 8.14 -51.93 -0.42 0.23 16 43 H 0.08 0.38 8.14 -51.93 -0.42 -0.05 16 44 H 0.08 0.68 8.14 -51.93 -0.42 0.25 16 45 H 0.05 0.32 7.08 -51.93 -0.37 -0.05 16 46 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 47 H 0.05 0.33 7.08 -51.93 -0.37 -0.04 16 48 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 49 H 0.08 0.76 8.14 -51.93 -0.42 0.33 16 50 H 0.08 0.39 7.30 -51.93 -0.38 0.02 16 51 H 0.08 0.60 6.36 -51.93 -0.33 0.27 16 LS Contribution 396.72 15.07 5.98 5.98 Total: -1.00 -35.58 396.72 -9.45 -45.03 By element: Atomic # 1 Polarization: 19.95 SS G_CDS: -8.29 Total: 11.65 kcal Atomic # 6 Polarization: 10.51 SS G_CDS: -0.67 Total: 9.84 kcal Atomic # 7 Polarization: -62.41 SS G_CDS: -1.61 Total: -64.02 kcal Atomic # 8 Polarization: -25.03 SS G_CDS: 0.18 Total: -24.85 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.02 Total: 16.38 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -35.58 -9.45 -45.03 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753207360.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.657 kcal (2) G-P(sol) polarization free energy of solvation -35.577 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.920 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.449 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.025 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.369 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds