Wall clock time and date at job start Tue Mar 31 2020 20:54:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.46493 * 120.00235 * 2 1 4 4 C 1.53002 * 109.47273 * 269.99834 * 3 2 1 5 5 N 1.46894 * 109.47324 * 180.02562 * 4 3 2 6 6 C 1.46899 * 111.00222 * 180.02562 * 5 4 3 7 7 C 1.50699 * 109.47277 * 180.02562 * 6 5 4 8 8 O 1.21289 * 120.00038 * 359.97438 * 7 6 5 9 9 N 1.34778 * 120.00233 * 180.02562 * 7 6 5 10 10 C 1.37094 * 120.00231 * 179.97438 * 9 7 6 11 11 H 1.07997 * 119.99909 * 0.02562 * 10 9 7 12 12 C 1.38952 * 119.99821 * 179.97438 * 10 9 7 13 13 N 1.31405 * 120.00408 * 0.02562 * 12 10 9 14 14 Si 1.86805 * 119.99870 * 179.97438 * 12 10 9 15 15 H 1.48499 * 109.47010 * 0.02562 * 14 12 10 16 16 H 1.48504 * 109.46872 * 119.99873 * 14 12 10 17 17 H 1.48497 * 109.47107 * 240.00300 * 14 12 10 18 18 C 1.34779 * 119.99765 * 180.02562 * 2 1 3 19 19 O 1.21280 * 120.00078 * 184.91200 * 18 2 1 20 20 C 1.50702 * 119.99938 * 4.90025 * 18 2 1 21 21 C 1.54134 * 110.74998 * 300.07360 * 20 18 2 22 22 C 1.55161 * 102.88731 * 262.58656 * 21 20 18 23 23 C 1.54840 * 101.65357 * 323.83471 * 22 21 20 24 24 N 1.47855 * 110.77446 * 181.18654 * 20 18 2 25 25 C 1.47959 * 108.37593 * 238.96446 * 24 20 18 26 26 C 1.54842 * 105.06315 * 22.81235 * 25 24 20 27 27 C 1.54140 * 111.32921 * 61.92487 * 20 18 2 28 28 H 1.09002 * 109.47225 * 275.04463 * 1 2 3 29 29 H 1.09002 * 109.47335 * 35.04422 * 1 2 3 30 30 H 1.08998 * 109.47769 * 155.04228 * 1 2 3 31 31 H 1.08994 * 109.47265 * 30.00262 * 3 2 1 32 32 H 1.09009 * 109.47288 * 150.00099 * 3 2 1 33 33 H 1.09001 * 109.47203 * 300.00021 * 4 3 2 34 34 H 1.09000 * 109.46923 * 59.99757 * 4 3 2 35 35 H 1.00904 * 111.00028 * 303.95829 * 5 4 3 36 36 H 1.08997 * 109.46644 * 299.99966 * 6 5 4 37 37 H 1.09000 * 109.47027 * 59.99948 * 6 5 4 38 38 H 0.97001 * 119.99554 * 359.97438 * 9 7 6 39 39 H 0.96995 * 120.00417 * 179.97438 * 13 12 10 40 40 H 1.08990 * 110.73279 * 144.23103 * 21 20 18 41 41 H 1.09005 * 110.72772 * 20.92852 * 21 20 18 42 42 H 1.08992 * 110.99792 * 81.92564 * 22 21 20 43 43 H 1.08998 * 110.99032 * 205.75025 * 22 21 20 44 44 H 1.09006 * 110.32337 * 155.57631 * 23 22 21 45 45 H 1.09000 * 110.32934 * 277.67846 * 23 22 21 46 46 H 1.08999 * 110.32654 * 141.71213 * 25 24 20 47 47 H 1.08995 * 110.31977 * 263.91821 * 25 24 20 48 48 H 1.08997 * 110.98728 * 205.23545 * 26 25 24 49 49 H 1.08999 * 110.98775 * 81.41959 * 26 25 24 50 50 H 1.09004 * 110.72530 * 216.11654 * 27 20 18 51 51 H 1.08997 * 110.72991 * 339.41094 * 27 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2686 0.0000 4 6 2.4526 1.7103 -1.4425 5 7 3.1876 2.9821 -1.4425 6 6 3.4504 3.4383 -2.8139 7 6 4.2048 4.7423 -2.7737 8 8 4.4946 5.2426 -1.7075 9 7 4.5566 5.3531 -3.9225 10 6 5.2424 6.5395 -3.8859 11 1 5.5012 6.9846 -2.9365 12 6 5.6055 7.1689 -5.0703 13 7 5.2911 6.6271 -6.2255 14 14 6.5394 8.7860 -5.0205 15 1 6.7690 9.1816 -3.6077 16 1 7.8461 8.6243 -5.7074 17 1 5.7460 9.8371 -5.7067 18 6 2.1388 -1.1673 -0.0005 19 8 3.3483 -1.1693 0.0894 20 6 1.3894 -2.4699 -0.1126 21 6 0.4012 -2.6339 1.0589 22 6 1.1893 -3.5259 2.0541 23 6 1.9572 -4.4651 1.0919 24 7 2.3212 -3.6168 -0.0643 25 6 2.1675 -4.3955 -1.3131 26 6 1.5733 -3.3988 -2.3383 27 6 0.6202 -2.5613 -1.4452 28 1 -0.3634 0.0904 1.0237 29 1 -0.3634 0.8414 -0.5901 30 1 -0.3634 -0.9316 -0.4336 31 1 1.6085 2.0283 0.5138 32 1 3.1500 1.1383 0.5139 33 1 3.0416 0.9507 -1.9563 34 1 1.5001 1.8406 -1.9564 35 1 2.6921 3.6862 -0.9162 36 1 4.0458 2.6905 -3.3377 37 1 2.5047 3.5812 -3.3368 38 1 4.3245 4.9531 -4.7752 39 1 5.5442 7.0666 -7.0523 40 1 -0.5087 -3.1349 0.7288 41 1 0.1700 -1.6674 1.5068 42 1 1.8793 -2.9297 2.6510 43 1 0.5110 -4.0915 2.6930 44 1 2.8545 -4.8511 1.5756 45 1 1.3162 -5.2872 0.7734 46 1 3.1370 -4.7576 -1.6552 47 1 1.4843 -5.2303 -1.1570 48 1 1.0190 -3.9232 -3.1165 49 1 2.3534 -2.7725 -2.7712 50 1 -0.3308 -3.0759 -1.3072 51 1 0.4652 -1.5696 -1.8701 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753207360.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:54:05 Heat of formation + Delta-G solvation = -71.048236 kcal Electronic energy + Delta-G solvation = -29947.328846 eV Core-core repulsion = 25880.889934 eV Total energy + Delta-G solvation = -4066.438912 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -42.15947 -40.22049 -39.60505 -37.45035 -36.31292 -35.76586 -34.92360 -33.31799 -32.84479 -30.70095 -29.24285 -28.10861 -27.29242 -26.49500 -25.73641 -23.71258 -22.90817 -21.92134 -21.71768 -21.10464 -19.96116 -19.74206 -17.96019 -17.75186 -17.43813 -17.10247 -17.06768 -16.52996 -16.40936 -16.10880 -15.82264 -15.37343 -15.23891 -15.04205 -14.80367 -14.57241 -14.24153 -14.13897 -14.00517 -13.81070 -13.58257 -13.51040 -13.38648 -13.27018 -12.99815 -12.94379 -12.78379 -12.47663 -12.42335 -12.22981 -12.17945 -12.11974 -11.97318 -11.89779 -11.80264 -11.53482 -11.36151 -10.68760 -10.41550 -10.04037 -9.70532 -9.39603 -9.34041 -8.48488 -5.97534 1.35694 1.41000 1.55616 1.63194 1.85130 2.01435 2.28570 2.88939 3.03932 3.18294 3.36698 3.44609 3.54029 3.70458 3.75235 3.96101 3.99497 4.04728 4.09342 4.17560 4.26997 4.29516 4.39347 4.40989 4.44297 4.54208 4.56299 4.60410 4.65235 4.67772 4.77616 4.79158 4.83596 4.92767 4.93985 4.96155 4.99363 5.01163 5.11454 5.19212 5.21720 5.39507 5.48796 5.80900 5.85717 6.04454 6.05189 6.36597 6.45102 6.57416 7.10206 7.27175 7.52845 8.08001 8.69204 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.024849 B = 0.001891 C = 0.001842 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1126.515617 B =14807.266524 C =15200.063497 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.057 3.943 2 N -0.614 5.614 3 C 0.123 3.877 4 C 0.060 3.940 5 N -0.684 5.684 6 C 0.068 3.932 7 C 0.438 3.562 8 O -0.622 6.622 9 N -0.572 5.572 10 C -0.334 4.334 11 H 0.079 0.921 12 C -0.014 4.014 13 N -0.920 5.920 14 Si 0.995 3.005 15 H -0.273 1.273 16 H -0.272 1.272 17 H -0.268 1.268 18 C 0.521 3.479 19 O -0.569 6.569 20 C 0.074 3.926 21 C -0.132 4.132 22 C -0.132 4.132 23 C 0.034 3.966 24 N -0.528 5.528 25 C 0.036 3.964 26 C -0.134 4.134 27 C -0.128 4.128 28 H 0.076 0.924 29 H 0.084 0.916 30 H 0.099 0.901 31 H 0.101 0.899 32 H 0.059 0.941 33 H 0.051 0.949 34 H 0.053 0.947 35 H 0.350 0.650 36 H 0.094 0.906 37 H 0.073 0.927 38 H 0.397 0.603 39 H 0.278 0.722 40 H 0.114 0.886 41 H 0.089 0.911 42 H 0.049 0.951 43 H 0.104 0.896 44 H 0.068 0.932 45 H 0.076 0.924 46 H 0.068 0.932 47 H 0.077 0.923 48 H 0.103 0.897 49 H 0.047 0.953 50 H 0.117 0.883 51 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.690 -25.334 9.830 34.154 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 N -0.348 5.348 3 C -0.001 4.001 4 C -0.070 4.070 5 N -0.318 5.318 6 C -0.064 4.064 7 C 0.225 3.775 8 O -0.509 6.509 9 N -0.209 5.209 10 C -0.464 4.464 11 H 0.097 0.903 12 C -0.214 4.214 13 N -0.561 5.561 14 Si 0.819 3.181 15 H -0.198 1.198 16 H -0.197 1.197 17 H -0.193 1.193 18 C 0.309 3.691 19 O -0.446 6.446 20 C -0.020 4.020 21 C -0.170 4.170 22 C -0.170 4.170 23 C -0.093 4.093 24 N -0.252 5.252 25 C -0.091 4.091 26 C -0.172 4.172 27 C -0.166 4.166 28 H 0.094 0.906 29 H 0.102 0.898 30 H 0.117 0.883 31 H 0.119 0.881 32 H 0.077 0.923 33 H 0.069 0.931 34 H 0.071 0.929 35 H 0.169 0.831 36 H 0.112 0.888 37 H 0.091 0.909 38 H 0.231 0.769 39 H 0.088 0.912 40 H 0.133 0.867 41 H 0.107 0.893 42 H 0.068 0.932 43 H 0.123 0.877 44 H 0.087 0.913 45 H 0.094 0.906 46 H 0.086 0.914 47 H 0.095 0.905 48 H 0.122 0.878 49 H 0.066 0.934 50 H 0.135 0.865 51 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -18.645 -25.079 10.521 32.974 hybrid contribution -0.444 0.838 -0.934 1.331 sum -19.088 -24.242 9.587 32.310 Atomic orbital electron populations 1.22473 0.77019 1.05300 1.03590 1.47830 1.08461 1.04697 1.73818 1.21197 0.97688 0.85322 0.95869 1.22173 0.96347 0.90743 0.97751 1.59865 1.52849 1.06121 1.12925 1.21488 0.99640 0.93863 0.91426 1.20804 0.84638 0.88166 0.83894 1.90488 1.60735 1.68683 1.30972 1.41930 1.50351 1.21171 1.07484 1.19716 1.33117 0.99307 0.94219 0.90297 1.26082 0.98418 1.02951 0.93948 1.69674 1.47248 1.41229 0.97939 0.84841 0.77917 0.77092 0.78289 1.19808 1.19680 1.19315 1.21005 0.87398 0.85777 0.74917 1.90691 1.16713 1.87543 1.49649 1.22211 0.91073 0.89565 0.99126 1.23217 0.97698 1.02216 0.93849 1.22785 0.98847 0.97728 0.97676 1.23333 0.99401 0.95437 0.91115 1.64856 1.49526 1.06706 1.04097 1.23315 1.00924 0.95905 0.89003 1.22792 0.98551 0.97646 0.98211 1.23112 0.99156 1.02203 0.92145 0.90567 0.89772 0.88283 0.88096 0.92287 0.93051 0.92859 0.83076 0.88758 0.90881 0.76948 0.91235 0.86731 0.89291 0.93176 0.87710 0.91316 0.90598 0.91388 0.90480 0.87821 0.93403 0.86487 0.89803 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.53 8.32 127.77 1.06 1.59 16 2 N -0.61 -12.10 2.81 -846.77 -2.38 -14.48 16 3 C 0.12 2.98 5.73 86.38 0.49 3.47 16 4 C 0.06 1.60 6.01 86.31 0.52 2.11 16 5 N -0.68 -23.39 6.13 -517.95 -3.17 -26.56 16 6 C 0.07 2.50 6.17 85.56 0.53 3.03 16 7 C 0.44 21.74 7.82 87.66 0.69 22.43 16 8 O -0.62 -35.82 15.78 -3.06 -0.05 -35.87 16 9 N -0.57 -30.34 5.29 -306.99 -1.62 -31.96 16 10 C -0.33 -19.46 9.68 84.04 0.81 -18.65 16 11 H 0.08 4.91 7.16 -2.91 -0.02 4.89 16 12 C -0.01 -0.78 5.50 84.93 0.47 -0.31 16 13 N -0.92 -50.45 13.05 21.66 0.28 -50.17 16 14 Si 1.00 43.73 29.55 68.60 2.03 45.76 16 15 H -0.27 -12.17 7.11 99.48 0.71 -11.47 16 16 H -0.27 -11.47 7.11 99.48 0.71 -10.76 16 17 H -0.27 -11.15 7.11 99.48 0.71 -10.44 16 18 C 0.52 13.25 6.50 87.66 0.57 13.82 16 19 O -0.57 -21.40 16.06 -3.03 -0.05 -21.45 16 20 C 0.07 1.23 0.62 3.37 0.00 1.23 16 21 C -0.13 -1.29 4.87 31.72 0.15 -1.13 16 22 C -0.13 -1.60 7.07 31.96 0.23 -1.37 16 23 C 0.03 0.50 6.72 86.73 0.58 1.08 16 24 N -0.53 -10.65 4.97 -831.16 -4.13 -14.78 16 25 C 0.04 0.55 6.72 86.73 0.58 1.13 16 26 C -0.13 -1.85 7.07 31.96 0.23 -1.63 16 27 C -0.13 -1.40 4.59 31.72 0.15 -1.25 16 28 H 0.08 0.48 7.27 -2.39 -0.02 0.46 16 29 H 0.08 0.60 8.11 -2.39 -0.02 0.58 16 30 H 0.10 0.56 3.82 -2.39 -0.01 0.55 16 31 H 0.10 1.92 8.07 -2.39 -0.02 1.90 16 32 H 0.06 1.89 7.36 -2.38 -0.02 1.87 16 33 H 0.05 1.60 8.14 -2.39 -0.02 1.58 16 34 H 0.05 1.14 8.14 -2.39 -0.02 1.12 16 35 H 0.35 11.71 8.43 -89.69 -0.76 10.95 16 36 H 0.09 3.32 8.14 -2.39 -0.02 3.30 16 37 H 0.07 2.26 8.14 -2.39 -0.02 2.24 16 38 H 0.40 19.91 7.90 -92.71 -0.73 19.18 16 39 H 0.28 14.19 8.31 -92.71 -0.77 13.42 16 40 H 0.11 0.40 7.30 -2.39 -0.02 0.38 16 41 H 0.09 0.82 5.39 -2.38 -0.01 0.81 16 42 H 0.05 0.87 8.14 -2.39 -0.02 0.85 16 43 H 0.10 0.69 8.14 -2.39 -0.02 0.67 16 44 H 0.07 1.15 8.14 -2.38 -0.02 1.13 16 45 H 0.08 0.71 7.08 -2.39 -0.02 0.69 16 46 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 47 H 0.08 0.76 7.08 -2.39 -0.02 0.75 16 48 H 0.10 0.89 8.14 -2.39 -0.02 0.87 16 49 H 0.05 0.95 8.14 -2.39 -0.02 0.93 16 50 H 0.12 0.49 7.30 -2.38 -0.02 0.47 16 51 H 0.08 0.93 6.36 -2.39 -0.02 0.92 16 Total: -1.00 -82.35 396.72 -2.57 -84.92 By element: Atomic # 1 Polarization: 39.57 SS G_CDS: -0.53 Total: 39.03 kcal Atomic # 6 Polarization: 18.50 SS G_CDS: 7.06 Total: 25.56 kcal Atomic # 7 Polarization: -126.93 SS G_CDS: -11.02 Total: -137.95 kcal Atomic # 8 Polarization: -57.22 SS G_CDS: -0.10 Total: -57.32 kcal Atomic # 14 Polarization: 43.73 SS G_CDS: 2.03 Total: 45.76 kcal Total: -82.35 -2.57 -84.92 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753207360.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.867 kcal (2) G-P(sol) polarization free energy of solvation -82.350 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.483 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.566 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.916 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.048 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds