Wall clock time and date at job start Tue Mar 31 2020 20:53:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.46507 * 120.00214 * 2 1 4 4 C 1.53000 * 109.47171 * 269.99747 * 3 2 1 5 5 N 1.46895 * 109.46911 * 179.97438 * 4 3 2 6 6 C 1.46893 * 111.00325 * 294.30773 * 5 4 3 7 7 C 1.53247 * 109.34045 * 172.74807 * 6 5 4 8 8 N 1.47075 * 108.52438 * 53.82529 * 7 6 5 9 9 C 1.36932 * 120.88110 * 128.79127 * 8 7 6 10 10 H 1.08000 * 120.00658 * 206.65576 * 9 8 7 11 11 C 1.38819 * 120.00130 * 26.66124 * 9 8 7 12 12 N 1.31618 * 119.99561 * 17.03021 * 11 9 8 13 13 Si 1.86798 * 120.00251 * 197.03117 * 11 9 8 14 14 H 1.48502 * 109.46839 * 0.02562 * 13 11 9 15 15 H 1.48497 * 109.46864 * 119.99936 * 13 11 9 16 16 H 1.48496 * 109.47178 * 239.99747 * 13 11 9 17 17 C 1.47082 * 118.23871 * 308.82194 * 8 7 6 18 18 C 1.46901 * 111.00063 * 170.00314 * 5 4 3 19 19 C 1.34778 * 120.00133 * 180.02562 * 2 1 3 20 20 O 1.21282 * 120.00124 * 180.02562 * 19 2 1 21 21 C 1.50697 * 119.99755 * 0.02562 * 19 2 1 22 22 H 1.08994 * 112.90959 * 48.74824 * 21 19 2 23 23 C 1.53781 * 113.61523 * 277.49413 * 21 19 2 24 24 C 1.53778 * 87.08615 * 220.02166 * 23 21 19 25 25 C 1.53779 * 87.07933 * 25.43012 * 24 23 21 26 26 H 1.09003 * 113.61061 * 89.20363 * 25 24 23 27 27 C 1.50703 * 113.61550 * 220.01851 * 25 24 23 28 28 N 1.34768 * 119.99921 * 280.49521 * 27 25 24 29 29 O 1.21282 * 119.99450 * 100.49992 * 27 25 24 30 30 H 1.08995 * 109.47139 * 269.99861 * 1 2 3 31 31 H 1.09000 * 109.46683 * 30.00145 * 1 2 3 32 32 H 1.08999 * 109.47401 * 149.99819 * 1 2 3 33 33 H 1.08994 * 109.46638 * 30.00158 * 3 2 1 34 34 H 1.09003 * 109.46887 * 150.00009 * 3 2 1 35 35 H 1.08993 * 109.47325 * 300.00184 * 4 3 2 36 36 H 1.09007 * 109.46563 * 60.00085 * 4 3 2 37 37 H 1.09003 * 109.49427 * 292.70165 * 6 5 4 38 38 H 1.08993 * 109.49824 * 52.78676 * 6 5 4 39 39 H 1.09004 * 109.62342 * 294.11605 * 7 6 5 40 40 H 1.09001 * 109.79105 * 173.63715 * 7 6 5 41 41 H 0.96999 * 120.00122 * 179.97438 * 12 11 9 42 42 H 1.09000 * 109.62552 * 291.47253 * 17 8 7 43 43 H 1.08996 * 109.79128 * 170.98623 * 17 8 7 44 44 H 1.09006 * 109.49010 * 307.21434 * 18 5 4 45 45 H 1.08994 * 109.49246 * 67.29447 * 18 5 4 46 46 H 1.09002 * 113.61241 * 105.47127 * 23 21 19 47 47 H 1.09003 * 113.61769 * 334.57414 * 23 21 19 48 48 H 1.09005 * 113.60997 * 270.88746 * 24 23 21 49 49 H 1.08994 * 113.62022 * 139.97988 * 24 23 21 50 50 H 0.97004 * 119.99765 * 179.97438 * 28 27 25 51 51 H 0.97003 * 120.00504 * 359.72728 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4526 1.7104 -1.4425 5 7 3.1866 2.9828 -1.4424 6 6 2.3670 4.0634 -0.8782 7 6 3.2239 5.3250 -0.7283 8 7 3.8419 5.6272 -2.0282 9 6 3.7455 6.8773 -2.5787 10 1 3.7978 7.0011 -3.6503 11 6 3.5804 7.9857 -1.7593 12 7 3.8476 7.8990 -0.4735 13 14 2.9793 9.6000 -2.4817 14 1 2.7515 9.4354 -3.9399 15 1 1.7075 9.9936 -1.8238 16 1 4.0004 10.6542 -2.2556 17 6 4.5659 4.5509 -2.7216 18 6 3.6561 3.3198 -2.7930 19 6 2.1389 -1.1672 -0.0005 20 8 3.3517 -1.1672 -0.0001 21 6 1.3853 -2.4723 -0.0017 22 1 0.6002 -2.5082 -0.7568 23 6 0.9176 -2.9148 1.3948 24 6 1.3039 -4.3457 0.9847 25 6 2.2975 -3.7103 -0.0021 26 1 3.2830 -3.5284 0.4268 27 6 2.3596 -4.4140 -1.3334 28 7 3.0737 -5.5496 -1.4626 29 8 1.7670 -3.9581 -2.2883 30 1 -0.3633 0.0000 1.0276 31 1 -0.3633 0.8900 -0.5139 32 1 -0.3634 -0.8899 -0.5138 33 1 1.6084 2.0283 0.5138 34 1 3.1499 1.1383 0.5139 35 1 3.0416 0.9508 -1.9563 36 1 1.5001 1.8408 -1.9563 37 1 1.5290 4.2699 -1.5439 38 1 1.9899 3.7617 0.0990 39 1 4.0016 5.1531 0.0158 40 1 2.5980 6.1614 -0.4171 41 1 3.7327 8.6735 0.0991 42 1 5.4726 4.3045 -2.1691 43 1 4.8273 4.8719 -3.7299 44 1 4.2141 2.4787 -3.2045 45 1 2.8002 3.5366 -3.4320 46 1 -0.1516 -2.7815 1.5598 47 1 1.5252 -2.5140 2.2062 48 1 0.4964 -4.8937 0.4991 49 1 1.7832 -4.9141 1.7817 50 1 3.1133 -6.0027 -2.3194 51 1 3.5509 -5.9120 -0.6998 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753341726.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:53:13 Heat of formation + Delta-G solvation = -15.155005 kcal Electronic energy + Delta-G solvation = -30099.927111 eV Core-core repulsion = 26035.911911 eV Total energy + Delta-G solvation = -4064.015199 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -41.18778 -39.46027 -38.15308 -37.29887 -35.78794 -34.27534 -33.95949 -31.56671 -29.87646 -29.58307 -27.37541 -27.19106 -26.81739 -25.33309 -23.32798 -22.50008 -21.93601 -21.41225 -20.05314 -19.18471 -19.03882 -18.18405 -17.40679 -16.88658 -16.71229 -16.29303 -15.72985 -15.09002 -14.91102 -14.85520 -14.52802 -14.46117 -14.02809 -13.60997 -13.46909 -13.42618 -13.30564 -13.24193 -13.06038 -12.89278 -12.53979 -12.36946 -12.15726 -11.94332 -11.77510 -11.39632 -11.36545 -11.04489 -11.00433 -10.87553 -10.71801 -10.36849 -10.24637 -10.14636 -10.04386 -9.99747 -9.76862 -9.69918 -9.56286 -8.75023 -8.46975 -7.75571 -6.62133 -5.74573 -3.15242 2.29550 2.50170 2.83063 3.22415 3.38948 3.46703 3.49241 3.90258 4.07145 4.21780 4.27064 4.49620 4.54892 4.60588 4.80125 4.94348 5.09413 5.18081 5.19194 5.23379 5.28020 5.36248 5.39878 5.43532 5.48949 5.50536 5.51892 5.67146 5.85722 5.90585 5.96605 6.05908 6.15738 6.21256 6.27274 6.37232 6.41583 6.47910 6.58833 6.75203 6.96044 7.00150 7.26640 7.30744 7.66283 7.69290 7.75768 7.86628 7.92712 8.09607 8.47286 9.25174 9.88668 10.47748 11.34326 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.025860 B = 0.002096 C = 0.002020 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1082.475999 B =13356.151248 C =13858.739149 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.077 3.923 2 N -0.612 5.612 3 C 0.118 3.882 4 C 0.044 3.956 5 N -0.530 5.530 6 C 0.033 3.967 7 C 0.178 3.822 8 N -0.596 5.596 9 C -0.249 4.249 10 H 0.066 0.934 11 C -0.001 4.001 12 N -0.903 5.903 13 Si 0.902 3.098 14 H -0.278 1.278 15 H -0.289 1.289 16 H -0.290 1.290 17 C 0.149 3.851 18 C 0.047 3.953 19 C 0.524 3.476 20 O -0.535 6.535 21 C -0.115 4.115 22 H 0.125 0.875 23 C -0.122 4.122 24 C -0.123 4.123 25 C -0.119 4.119 26 H 0.129 0.871 27 C 0.529 3.471 28 N -0.854 5.854 29 O -0.542 6.542 30 H 0.058 0.942 31 H 0.073 0.927 32 H 0.071 0.929 33 H 0.079 0.921 34 H 0.093 0.907 35 H 0.069 0.931 36 H 0.025 0.975 37 H 0.024 0.976 38 H 0.061 0.939 39 H 0.026 0.974 40 H 0.088 0.912 41 H 0.253 0.747 42 H 0.026 0.974 43 H 0.055 0.945 44 H 0.061 0.939 45 H 0.026 0.974 46 H 0.083 0.917 47 H 0.091 0.909 48 H 0.088 0.912 49 H 0.083 0.917 50 H 0.400 0.600 51 H 0.402 0.598 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.351 -28.210 5.336 29.900 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 N -0.345 5.345 3 C -0.004 4.004 4 C -0.085 4.085 5 N -0.255 5.255 6 C -0.096 4.096 7 C 0.052 3.948 8 N -0.319 5.319 9 C -0.378 4.378 10 H 0.084 0.916 11 C -0.199 4.199 12 N -0.548 5.548 13 Si 0.732 3.268 14 H -0.203 1.203 15 H -0.216 1.216 16 H -0.217 1.217 17 C 0.022 3.978 18 C -0.082 4.082 19 C 0.312 3.688 20 O -0.411 6.411 21 C -0.136 4.136 22 H 0.143 0.857 23 C -0.159 4.159 24 C -0.160 4.160 25 C -0.141 4.141 26 H 0.147 0.853 27 C 0.314 3.686 28 N -0.417 5.417 29 O -0.418 6.418 30 H 0.077 0.923 31 H 0.092 0.908 32 H 0.090 0.910 33 H 0.097 0.903 34 H 0.111 0.889 35 H 0.088 0.912 36 H 0.043 0.957 37 H 0.042 0.958 38 H 0.079 0.921 39 H 0.044 0.956 40 H 0.106 0.894 41 H 0.063 0.937 42 H 0.044 0.956 43 H 0.074 0.926 44 H 0.079 0.921 45 H 0.045 0.955 46 H 0.101 0.899 47 H 0.109 0.891 48 H 0.107 0.893 49 H 0.101 0.899 50 H 0.231 0.769 51 H 0.230 0.770 Dipole moment (debyes) X Y Z Total from point charges -7.748 -27.647 5.237 29.186 hybrid contribution -0.817 0.620 -0.941 1.392 sum -8.565 -27.027 4.296 28.675 Atomic orbital electron populations 1.21841 0.79517 1.03405 1.01887 1.47826 1.07046 1.06245 1.73405 1.21525 0.98103 0.83363 0.97450 1.22356 0.96611 0.93171 0.96368 1.61869 1.39080 1.01767 1.22785 1.22963 0.95534 0.93663 0.97481 1.20861 0.94608 0.92189 0.87169 1.44130 1.59730 1.07279 1.20790 1.19243 1.44556 0.82935 0.91109 0.91636 1.25028 1.01333 0.97537 0.96005 1.70043 1.51072 1.29575 1.04148 0.86226 0.78259 0.83836 0.78492 1.20346 1.21625 1.21736 1.20976 0.92977 0.87425 0.96397 1.22596 0.98533 0.98961 0.88150 1.20347 0.87837 0.84980 0.75678 1.90707 1.13801 1.87180 1.49419 1.22687 0.99291 0.91173 1.00461 0.85676 1.22813 1.02387 0.95575 0.95162 1.22820 0.98259 0.96933 0.98018 1.22718 1.01718 0.95747 0.93880 0.85288 1.20445 0.77588 0.80321 0.90228 1.43837 1.53718 1.27755 1.16422 1.90749 1.44974 1.65370 1.40713 0.92322 0.90847 0.90987 0.90272 0.88889 0.91201 0.95703 0.95779 0.92105 0.95555 0.89357 0.93720 0.95585 0.92627 0.92062 0.95522 0.89878 0.89077 0.89317 0.89866 0.76899 0.76981 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.62 10.25 59.84 0.61 1.23 16 2 N -0.61 -7.26 2.87 -181.58 -0.52 -7.78 16 3 C 0.12 1.67 5.34 -4.04 -0.02 1.65 16 4 C 0.04 0.72 5.29 -3.83 -0.02 0.70 16 5 N -0.53 -10.12 4.63 -234.33 -1.08 -11.21 16 6 C 0.03 0.65 5.46 -3.70 -0.02 0.63 16 7 C 0.18 4.40 5.43 -3.60 -0.02 4.38 16 8 N -0.60 -15.64 3.04 -172.01 -0.52 -16.16 16 9 C -0.25 -7.02 9.63 -15.06 -0.15 -7.16 16 10 H 0.07 1.82 7.88 -52.49 -0.41 1.41 16 11 C 0.00 -0.02 4.93 -17.43 -0.09 -0.11 16 12 N -0.90 -26.65 11.15 55.49 0.62 -26.03 16 13 Si 0.90 22.02 29.59 -169.99 -5.03 16.99 16 14 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 15 H -0.29 -7.05 7.11 56.52 0.40 -6.64 16 16 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 17 C 0.15 3.36 6.69 -3.60 -0.02 3.33 16 18 C 0.05 0.92 5.62 -3.70 -0.02 0.90 16 19 C 0.52 6.72 7.20 -10.99 -0.08 6.64 16 20 O -0.53 -8.88 15.48 5.56 0.09 -8.79 16 21 C -0.11 -1.05 2.26 -90.96 -0.21 -1.25 16 22 H 0.13 1.17 6.28 -51.93 -0.33 0.84 16 23 C -0.12 -0.71 7.61 -25.92 -0.20 -0.91 16 24 C -0.12 -0.60 7.63 -25.92 -0.20 -0.79 16 25 C -0.12 -0.96 3.47 -90.96 -0.32 -1.28 16 26 H 0.13 1.10 7.44 -51.93 -0.39 0.72 16 27 C 0.53 5.10 7.62 -10.99 -0.08 5.01 16 28 N -0.85 -4.75 8.87 31.22 0.28 -4.47 16 29 O -0.54 -7.62 16.76 5.56 0.09 -7.53 16 30 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 31 H 0.07 0.59 8.07 -51.93 -0.42 0.18 16 32 H 0.07 0.49 6.21 -51.93 -0.32 0.16 16 33 H 0.08 1.04 6.33 -51.93 -0.33 0.71 16 34 H 0.09 1.51 7.42 -51.93 -0.39 1.12 16 35 H 0.07 1.21 7.97 -51.93 -0.41 0.80 16 36 H 0.02 0.39 8.12 -51.93 -0.42 -0.03 16 37 H 0.02 0.50 8.14 -51.93 -0.42 0.07 16 38 H 0.06 1.07 6.16 -51.93 -0.32 0.75 16 39 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 40 H 0.09 2.39 6.11 -51.93 -0.32 2.07 16 41 H 0.25 7.16 8.31 -40.82 -0.34 6.82 16 42 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 43 H 0.06 1.20 7.96 -51.93 -0.41 0.78 16 44 H 0.06 1.08 7.99 -51.93 -0.41 0.67 16 45 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 46 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 47 H 0.09 0.57 8.09 -51.93 -0.42 0.15 16 48 H 0.09 0.40 8.09 -51.93 -0.42 -0.02 16 49 H 0.08 0.26 8.14 -51.93 -0.42 -0.16 16 50 H 0.40 1.93 8.93 -40.82 -0.36 1.56 16 51 H 0.40 1.01 8.83 -40.82 -0.36 0.65 16 LS Contribution 401.34 15.07 6.05 6.05 Total: -1.00 -36.48 401.34 -9.40 -45.88 By element: Atomic # 1 Polarization: 8.62 SS G_CDS: -8.54 Total: 0.08 kcal Atomic # 6 Polarization: 13.80 SS G_CDS: -0.82 Total: 12.97 kcal Atomic # 7 Polarization: -64.41 SS G_CDS: -1.23 Total: -65.65 kcal Atomic # 8 Polarization: -16.50 SS G_CDS: 0.18 Total: -16.32 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -5.03 Total: 16.99 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -36.48 -9.40 -45.88 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753341726.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.727 kcal (2) G-P(sol) polarization free energy of solvation -36.481 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.753 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.402 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.882 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.155 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds