Wall clock time and date at job start Tue Mar 31 2020 20:53:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.46507 * 120.00214 * 2 1 4 4 C 1.53000 * 109.47171 * 269.99747 * 3 2 1 5 5 N 1.46895 * 109.46911 * 179.97438 * 4 3 2 6 6 C 1.46893 * 111.00325 * 294.30773 * 5 4 3 7 7 C 1.53247 * 109.34045 * 172.74807 * 6 5 4 8 8 N 1.47075 * 108.52438 * 53.82529 * 7 6 5 9 9 C 1.36932 * 120.88110 * 128.79127 * 8 7 6 10 10 H 1.08000 * 120.00658 * 206.65576 * 9 8 7 11 11 C 1.38819 * 120.00130 * 26.66124 * 9 8 7 12 12 N 1.31618 * 119.99561 * 17.03021 * 11 9 8 13 13 Si 1.86798 * 120.00251 * 197.03117 * 11 9 8 14 14 H 1.48502 * 109.46839 * 0.02562 * 13 11 9 15 15 H 1.48497 * 109.46864 * 119.99936 * 13 11 9 16 16 H 1.48496 * 109.47178 * 239.99747 * 13 11 9 17 17 C 1.47082 * 118.23871 * 308.82194 * 8 7 6 18 18 C 1.46901 * 111.00063 * 170.00314 * 5 4 3 19 19 C 1.34778 * 120.00133 * 180.02562 * 2 1 3 20 20 O 1.21282 * 120.00124 * 180.02562 * 19 2 1 21 21 C 1.50697 * 119.99755 * 0.02562 * 19 2 1 22 22 H 1.08994 * 112.90959 * 48.74824 * 21 19 2 23 23 C 1.53781 * 113.61523 * 277.49413 * 21 19 2 24 24 C 1.53778 * 87.08615 * 220.02166 * 23 21 19 25 25 C 1.53779 * 87.07933 * 25.43012 * 24 23 21 26 26 H 1.09003 * 113.61061 * 89.20363 * 25 24 23 27 27 C 1.50703 * 113.61550 * 220.01851 * 25 24 23 28 28 N 1.34768 * 119.99921 * 280.49521 * 27 25 24 29 29 O 1.21282 * 119.99450 * 100.49992 * 27 25 24 30 30 H 1.08995 * 109.47139 * 269.99861 * 1 2 3 31 31 H 1.09000 * 109.46683 * 30.00145 * 1 2 3 32 32 H 1.08999 * 109.47401 * 149.99819 * 1 2 3 33 33 H 1.08994 * 109.46638 * 30.00158 * 3 2 1 34 34 H 1.09003 * 109.46887 * 150.00009 * 3 2 1 35 35 H 1.08993 * 109.47325 * 300.00184 * 4 3 2 36 36 H 1.09007 * 109.46563 * 60.00085 * 4 3 2 37 37 H 1.09003 * 109.49427 * 292.70165 * 6 5 4 38 38 H 1.08993 * 109.49824 * 52.78676 * 6 5 4 39 39 H 1.09004 * 109.62342 * 294.11605 * 7 6 5 40 40 H 1.09001 * 109.79105 * 173.63715 * 7 6 5 41 41 H 0.96999 * 120.00122 * 179.97438 * 12 11 9 42 42 H 1.09000 * 109.62552 * 291.47253 * 17 8 7 43 43 H 1.08996 * 109.79128 * 170.98623 * 17 8 7 44 44 H 1.09006 * 109.49010 * 307.21434 * 18 5 4 45 45 H 1.08994 * 109.49246 * 67.29447 * 18 5 4 46 46 H 1.09002 * 113.61241 * 105.47127 * 23 21 19 47 47 H 1.09003 * 113.61769 * 334.57414 * 23 21 19 48 48 H 1.09005 * 113.60997 * 270.88746 * 24 23 21 49 49 H 1.08994 * 113.62022 * 139.97988 * 24 23 21 50 50 H 0.97004 * 119.99765 * 179.97438 * 28 27 25 51 51 H 0.97003 * 120.00504 * 359.72728 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4526 1.7104 -1.4425 5 7 3.1866 2.9828 -1.4424 6 6 2.3670 4.0634 -0.8782 7 6 3.2239 5.3250 -0.7283 8 7 3.8419 5.6272 -2.0282 9 6 3.7455 6.8773 -2.5787 10 1 3.7978 7.0011 -3.6503 11 6 3.5804 7.9857 -1.7593 12 7 3.8476 7.8990 -0.4735 13 14 2.9793 9.6000 -2.4817 14 1 2.7515 9.4354 -3.9399 15 1 1.7075 9.9936 -1.8238 16 1 4.0004 10.6542 -2.2556 17 6 4.5659 4.5509 -2.7216 18 6 3.6561 3.3198 -2.7930 19 6 2.1389 -1.1672 -0.0005 20 8 3.3517 -1.1672 -0.0001 21 6 1.3853 -2.4723 -0.0017 22 1 0.6002 -2.5082 -0.7568 23 6 0.9176 -2.9148 1.3948 24 6 1.3039 -4.3457 0.9847 25 6 2.2975 -3.7103 -0.0021 26 1 3.2830 -3.5284 0.4268 27 6 2.3596 -4.4140 -1.3334 28 7 3.0737 -5.5496 -1.4626 29 8 1.7670 -3.9581 -2.2883 30 1 -0.3633 0.0000 1.0276 31 1 -0.3633 0.8900 -0.5139 32 1 -0.3634 -0.8899 -0.5138 33 1 1.6084 2.0283 0.5138 34 1 3.1499 1.1383 0.5139 35 1 3.0416 0.9508 -1.9563 36 1 1.5001 1.8408 -1.9563 37 1 1.5290 4.2699 -1.5439 38 1 1.9899 3.7617 0.0990 39 1 4.0016 5.1531 0.0158 40 1 2.5980 6.1614 -0.4171 41 1 3.7327 8.6735 0.0991 42 1 5.4726 4.3045 -2.1691 43 1 4.8273 4.8719 -3.7299 44 1 4.2141 2.4787 -3.2045 45 1 2.8002 3.5366 -3.4320 46 1 -0.1516 -2.7815 1.5598 47 1 1.5252 -2.5140 2.2062 48 1 0.4964 -4.8937 0.4991 49 1 1.7832 -4.9141 1.7817 50 1 3.1133 -6.0027 -2.3194 51 1 3.5509 -5.9120 -0.6998 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753341726.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:53:11 Heat of formation + Delta-G solvation = -43.489229 kcal Electronic energy + Delta-G solvation = -30101.155775 eV Core-core repulsion = 26035.911911 eV Total energy + Delta-G solvation = -4065.243864 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 1.43 seconds Orbital eigenvalues (eV) -41.93464 -40.40235 -39.68082 -38.08251 -36.99344 -35.94215 -34.61690 -33.45320 -31.68820 -30.97076 -28.40142 -27.93821 -27.75957 -26.61598 -24.98898 -24.28280 -22.99805 -22.34790 -20.87877 -20.83105 -19.94854 -18.88770 -18.74520 -18.11367 -17.60860 -17.39564 -16.90079 -16.59793 -16.12164 -16.00586 -15.67042 -15.53481 -15.36239 -15.25391 -15.00832 -14.98647 -14.62281 -14.05566 -13.96525 -13.86258 -13.77586 -13.28063 -13.15091 -13.04995 -12.99231 -12.87612 -12.66179 -12.53727 -12.40585 -12.13510 -12.04890 -12.04183 -11.86776 -11.59916 -11.47276 -11.39371 -10.88207 -10.70871 -10.64826 -10.61243 -9.75436 -9.30773 -8.70934 -7.89008 -5.34067 1.45644 1.46780 1.55512 1.58166 1.60046 1.93614 2.49754 2.64044 3.02137 3.26275 3.28324 3.52634 3.60742 3.64599 3.72683 3.88019 4.00693 4.09270 4.20757 4.25461 4.29713 4.35843 4.41585 4.50631 4.56855 4.62927 4.65013 4.69181 4.71821 4.78110 4.84693 4.87437 4.93701 4.94995 5.00666 5.02263 5.04693 5.15203 5.33171 5.37252 5.47985 5.59834 5.66632 5.88727 6.11887 6.17999 6.35712 6.37704 6.45360 7.11572 7.14293 7.33635 7.81001 8.36447 9.18302 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.025860 B = 0.002096 C = 0.002020 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1082.475999 B =13356.151248 C =13858.739149 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.071 3.929 2 N -0.612 5.612 3 C 0.126 3.874 4 C 0.056 3.944 5 N -0.542 5.542 6 C 0.051 3.949 7 C 0.185 3.815 8 N -0.615 5.615 9 C -0.264 4.264 10 H 0.067 0.933 11 C -0.052 4.052 12 N -0.935 5.935 13 Si 0.971 3.029 14 H -0.268 1.268 15 H -0.287 1.287 16 H -0.292 1.292 17 C 0.146 3.854 18 C 0.057 3.943 19 C 0.516 3.484 20 O -0.583 6.583 21 C -0.119 4.119 22 H 0.125 0.875 23 C -0.111 4.111 24 C -0.104 4.104 25 C -0.125 4.125 26 H 0.122 0.878 27 C 0.523 3.477 28 N -0.835 5.835 29 O -0.594 6.594 30 H 0.082 0.918 31 H 0.075 0.925 32 H 0.087 0.913 33 H 0.093 0.907 34 H 0.068 0.932 35 H 0.056 0.944 36 H 0.036 0.964 37 H 0.022 0.978 38 H 0.088 0.912 39 H -0.003 1.003 40 H 0.062 0.938 41 H 0.251 0.749 42 H 0.014 0.986 43 H 0.062 0.938 44 H 0.081 0.919 45 H 0.026 0.974 46 H 0.106 0.894 47 H 0.087 0.913 48 H 0.097 0.903 49 H 0.107 0.893 50 H 0.406 0.594 51 H 0.418 0.582 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.329 -30.045 5.726 32.282 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 N -0.344 5.344 3 C 0.002 3.998 4 C -0.073 4.073 5 N -0.267 5.267 6 C -0.078 4.078 7 C 0.059 3.941 8 N -0.339 5.339 9 C -0.394 4.394 10 H 0.084 0.916 11 C -0.247 4.247 12 N -0.581 5.581 13 Si 0.799 3.201 14 H -0.193 1.193 15 H -0.213 1.213 16 H -0.219 1.219 17 C 0.020 3.980 18 C -0.072 4.072 19 C 0.306 3.694 20 O -0.463 6.463 21 C -0.141 4.141 22 H 0.142 0.858 23 C -0.148 4.148 24 C -0.141 4.141 25 C -0.146 4.146 26 H 0.140 0.860 27 C 0.309 3.691 28 N -0.398 5.398 29 O -0.475 6.475 30 H 0.101 0.899 31 H 0.094 0.906 32 H 0.105 0.895 33 H 0.111 0.889 34 H 0.086 0.914 35 H 0.075 0.925 36 H 0.054 0.946 37 H 0.041 0.959 38 H 0.106 0.894 39 H 0.016 0.984 40 H 0.080 0.920 41 H 0.060 0.940 42 H 0.032 0.968 43 H 0.080 0.920 44 H 0.100 0.900 45 H 0.044 0.956 46 H 0.125 0.875 47 H 0.106 0.894 48 H 0.116 0.884 49 H 0.125 0.875 50 H 0.237 0.763 51 H 0.250 0.750 Dipole moment (debyes) X Y Z Total from point charges -9.732 -29.550 5.640 31.618 hybrid contribution -0.108 1.129 -1.075 1.562 sum -9.840 -28.421 4.565 30.420 Atomic orbital electron populations 1.22111 0.76911 1.04319 1.03763 1.47937 1.08599 1.05140 1.72691 1.21288 0.97748 0.84963 0.95791 1.22277 0.96282 0.90976 0.97810 1.61805 1.39804 1.02567 1.22545 1.22659 0.94239 0.91878 0.99039 1.20651 0.93839 0.93510 0.86112 1.44422 1.60570 1.07631 1.21246 1.19557 1.44433 0.84075 0.91372 0.91572 1.25829 1.01643 1.00867 0.96397 1.70199 1.52112 1.30410 1.05392 0.85154 0.77390 0.79385 0.78173 1.19263 1.21309 1.21866 1.21084 0.92985 0.87852 0.96084 1.22426 0.98068 0.98110 0.88591 1.21096 0.87557 0.86287 0.74506 1.90676 1.15975 1.87941 1.51685 1.22800 0.99278 0.89260 1.02744 0.85755 1.22831 1.03687 0.95604 0.92721 1.22807 0.97314 0.96655 0.97348 1.22795 1.02066 0.95877 0.93896 0.86018 1.20788 0.77267 0.80894 0.90176 1.43703 1.52243 1.26436 1.17413 1.90720 1.47493 1.67002 1.42297 0.89922 0.90602 0.89470 0.88859 0.91356 0.92512 0.94611 0.95926 0.89394 0.98440 0.92020 0.93954 0.96843 0.91996 0.90029 0.95581 0.87535 0.89402 0.88423 0.87460 0.76301 0.75034 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.96 10.25 127.77 1.31 2.27 16 2 N -0.61 -13.75 2.87 -846.77 -2.43 -16.19 16 3 C 0.13 3.45 5.34 86.38 0.46 3.91 16 4 C 0.06 1.75 5.29 86.30 0.46 2.21 16 5 N -0.54 -20.46 4.63 -895.28 -4.14 -24.61 16 6 C 0.05 2.01 5.46 86.39 0.47 2.48 16 7 C 0.18 9.38 5.43 86.35 0.47 9.85 16 8 N -0.61 -32.85 3.04 -698.12 -2.12 -34.97 16 9 C -0.26 -15.10 9.63 84.04 0.81 -14.29 16 10 H 0.07 3.69 7.88 -2.91 -0.02 3.66 16 11 C -0.05 -2.98 4.93 84.86 0.42 -2.56 16 12 N -0.93 -56.42 11.15 21.65 0.24 -56.18 16 13 Si 0.97 45.64 29.59 68.60 2.03 47.67 16 14 H -0.27 -12.03 7.11 99.48 0.71 -11.33 16 15 H -0.29 -13.25 7.11 99.48 0.71 -12.54 16 16 H -0.29 -13.69 7.11 99.48 0.71 -12.99 16 17 C 0.15 6.65 6.69 86.35 0.58 7.22 16 18 C 0.06 2.22 5.62 86.38 0.49 2.70 16 19 C 0.52 13.00 7.20 87.66 0.63 13.64 16 20 O -0.58 -19.81 15.48 -3.03 -0.05 -19.86 16 21 C -0.12 -2.01 2.26 -11.01 -0.02 -2.04 16 22 H 0.12 2.15 6.28 -2.39 -0.02 2.13 16 23 C -0.11 -0.97 7.61 31.12 0.24 -0.74 16 24 C -0.10 -0.69 7.63 31.12 0.24 -0.45 16 25 C -0.12 -1.86 3.47 -11.01 -0.04 -1.89 16 26 H 0.12 2.01 7.44 -2.39 -0.02 2.00 16 27 C 0.52 9.68 7.62 87.66 0.67 10.35 16 28 N -0.83 -8.18 8.87 -173.54 -1.54 -9.72 16 29 O -0.59 -16.77 16.76 -3.03 -0.05 -16.82 16 30 H 0.08 0.76 8.14 -2.39 -0.02 0.74 16 31 H 0.08 1.02 8.07 -2.39 -0.02 1.00 16 32 H 0.09 0.94 6.21 -2.39 -0.01 0.93 16 33 H 0.09 2.28 6.33 -2.39 -0.02 2.26 16 34 H 0.07 2.24 7.42 -2.39 -0.02 2.22 16 35 H 0.06 1.95 7.97 -2.39 -0.02 1.93 16 36 H 0.04 1.06 8.12 -2.38 -0.02 1.04 16 37 H 0.02 0.91 8.14 -2.39 -0.02 0.89 16 38 H 0.09 2.98 6.16 -2.39 -0.01 2.96 16 39 H 0.00 -0.14 8.14 -2.39 -0.02 -0.16 16 40 H 0.06 3.44 6.11 -2.39 -0.01 3.43 16 41 H 0.25 14.54 8.31 -92.71 -0.77 13.77 16 42 H 0.01 0.65 8.14 -2.39 -0.02 0.63 16 43 H 0.06 2.68 7.96 -2.39 -0.02 2.67 16 44 H 0.08 2.81 7.99 -2.38 -0.02 2.79 16 45 H 0.03 1.01 8.14 -2.39 -0.02 0.99 16 46 H 0.11 0.47 8.14 -2.39 -0.02 0.45 16 47 H 0.09 0.88 8.09 -2.39 -0.02 0.86 16 48 H 0.10 0.54 8.09 -2.38 -0.02 0.52 16 49 H 0.11 0.26 8.14 -2.39 -0.02 0.24 16 50 H 0.41 3.43 8.93 -92.70 -0.83 2.61 16 51 H 0.42 1.31 8.83 -92.71 -0.82 0.49 16 Total: -1.00 -82.21 401.34 -1.60 -83.80 By element: Atomic # 1 Polarization: 14.92 SS G_CDS: -0.70 Total: 14.22 kcal Atomic # 6 Polarization: 25.48 SS G_CDS: 7.17 Total: 32.65 kcal Atomic # 7 Polarization: -131.67 SS G_CDS: -10.00 Total: -141.67 kcal Atomic # 8 Polarization: -36.58 SS G_CDS: -0.10 Total: -36.68 kcal Atomic # 14 Polarization: 45.64 SS G_CDS: 2.03 Total: 47.67 kcal Total: -82.21 -1.60 -83.80 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753341726.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.316 kcal (2) G-P(sol) polarization free energy of solvation -82.209 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.893 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.596 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.805 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.489 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.44 seconds