Wall clock time and date at job start Tue Mar 31 2020 20:53:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.46498 * 119.99773 * 2 1 4 4 C 1.53004 * 109.47104 * 269.99715 * 3 2 1 5 5 N 1.46896 * 109.47384 * 179.97438 * 4 3 2 6 6 C 1.46898 * 111.00284 * 189.99779 * 5 4 3 7 7 C 1.53243 * 109.34050 * 187.25406 * 6 5 4 8 8 N 1.47079 * 108.52020 * 306.17160 * 7 6 5 9 9 C 1.36931 * 120.87939 * 231.18202 * 8 7 6 10 10 H 1.08008 * 119.99921 * 27.39072 * 9 8 7 11 11 C 1.38816 * 120.00321 * 207.10626 * 9 8 7 12 12 N 1.31620 * 119.99512 * 16.77573 * 11 9 8 13 13 Si 1.86796 * 120.00078 * 196.77498 * 11 9 8 14 14 H 1.48501 * 109.47222 * 60.00697 * 13 11 9 15 15 H 1.48508 * 109.46954 * 180.02562 * 13 11 9 16 16 H 1.48492 * 109.47603 * 300.00226 * 13 11 9 17 17 C 1.47076 * 118.23790 * 51.45976 * 8 7 6 18 18 C 1.46902 * 110.99947 * 314.30740 * 5 4 3 19 19 C 1.34780 * 120.00137 * 179.97438 * 2 1 3 20 20 O 1.21275 * 120.00056 * 179.97438 * 19 2 1 21 21 C 1.50699 * 119.99845 * 0.02562 * 19 2 1 22 22 H 1.09003 * 109.66894 * 299.99637 * 21 19 2 23 23 C 1.53347 * 109.67326 * 179.50195 * 21 19 2 24 24 C 1.52925 * 108.66953 * 172.75750 * 23 21 19 25 25 N 1.45754 * 110.50672 * 50.72316 * 24 23 21 26 26 C 1.33359 * 124.10304 * 340.91399 * 25 24 23 27 27 O 1.21277 * 118.24076 * 182.22017 * 26 25 24 28 28 C 1.50179 * 123.51028 * 2.24348 * 26 25 24 29 29 H 1.08999 * 109.47105 * 90.00434 * 1 2 3 30 30 H 1.09002 * 109.46826 * 209.99989 * 1 2 3 31 31 H 1.08997 * 109.47086 * 330.00381 * 1 2 3 32 32 H 1.09004 * 109.47137 * 149.99851 * 3 2 1 33 33 H 1.08996 * 109.47393 * 29.99689 * 3 2 1 34 34 H 1.08997 * 109.46785 * 59.99740 * 4 3 2 35 35 H 1.08996 * 109.46974 * 300.00230 * 4 3 2 36 36 H 1.08999 * 109.48689 * 67.29600 * 6 5 4 37 37 H 1.08996 * 109.49388 * 307.22021 * 6 5 4 38 38 H 1.09004 * 109.62472 * 186.46185 * 7 6 5 39 39 H 1.09002 * 109.62565 * 65.88233 * 7 6 5 40 40 H 0.96998 * 119.99738 * 179.97438 * 12 11 9 41 41 H 1.09008 * 109.62791 * 68.24674 * 17 8 7 42 42 H 1.08999 * 109.63209 * 188.82944 * 17 8 7 43 43 H 1.09005 * 109.48510 * 292.69991 * 18 5 4 44 44 H 1.08990 * 109.49660 * 52.75531 * 18 5 4 45 45 H 1.09002 * 109.59870 * 292.49201 * 23 21 19 46 46 H 1.08996 * 109.60153 * 52.97384 * 23 21 19 47 47 H 1.08998 * 109.27965 * 290.41008 * 24 23 21 48 48 H 1.08996 * 109.12873 * 170.93831 * 24 23 21 49 49 H 0.96999 * 117.94685 * 160.93768 * 25 24 23 50 50 H 1.09000 * 109.39635 * 222.28700 * 28 26 25 51 51 H 1.09006 * 109.32776 * 102.50632 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4525 1.7104 -1.4425 5 7 3.1864 2.9829 -1.4426 6 6 3.2434 3.5577 -2.7932 7 6 4.1651 4.7820 -2.7853 8 7 3.7072 5.7047 -1.7355 9 6 3.4850 7.0275 -2.0105 10 1 3.2091 7.3326 -3.0092 11 6 3.6086 7.9760 -1.0044 12 7 4.2459 7.6765 0.1076 13 14 2.8704 9.6772 -1.2288 14 1 1.4041 9.5578 -1.4310 15 1 3.1387 10.4966 -0.0196 16 1 3.4820 10.3299 -2.4141 17 6 3.5003 5.1701 -0.3810 18 6 2.5991 3.9294 -0.4849 19 6 2.1390 -1.1672 0.0005 20 8 3.3517 -1.1672 0.0001 21 6 1.3855 -2.4723 0.0005 22 1 0.7573 -2.5332 0.8892 23 6 2.3778 -3.6413 -0.0114 24 6 1.6002 -4.9454 0.1714 25 7 0.4927 -5.0162 -0.7735 26 6 -0.0208 -3.9594 -1.4042 27 8 -0.9700 -4.1347 -2.1385 28 6 0.5136 -2.5640 -1.2541 29 1 -0.3633 -0.0001 -1.0277 30 1 -0.3633 -0.8900 0.5138 31 1 -0.3633 0.8900 0.5138 32 1 3.1499 1.1384 0.5139 33 1 1.6084 2.0284 0.5138 34 1 1.5001 1.8406 -1.9564 35 1 3.0416 0.9507 -1.9563 36 1 2.2425 3.8580 -3.1031 37 1 3.6322 2.8141 -3.4889 38 1 4.1217 5.2792 -3.7543 39 1 5.1881 4.4687 -2.5768 40 1 4.3325 8.3393 0.8105 41 1 4.4607 4.8934 0.0541 42 1 3.0172 5.9241 0.2404 43 1 1.6072 4.2245 -0.8271 44 1 2.5203 3.4552 0.4933 45 1 2.9071 -3.6619 -0.9640 46 1 3.0917 -3.5233 0.8038 47 1 1.2100 -4.9922 1.1881 48 1 2.2712 -5.7878 0.0039 49 1 0.1047 -5.8866 -0.9546 50 1 -0.3184 -1.8649 -1.1689 51 1 1.1112 -2.3104 -2.1298 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753342331.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:53:41 Heat of formation + Delta-G solvation = -28.727061 kcal Electronic energy + Delta-G solvation = -30266.491756 eV Core-core repulsion = 26201.888028 eV Total energy + Delta-G solvation = -4064.603728 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 1.55 seconds Orbital eigenvalues (eV) -41.20629 -39.80868 -38.22324 -36.75997 -35.98173 -34.51000 -33.57202 -31.56175 -30.20934 -29.92798 -29.16084 -27.21193 -26.38590 -25.09817 -23.88584 -23.20804 -22.47020 -21.27099 -19.80557 -19.33654 -19.06938 -17.81082 -17.49051 -16.84008 -16.73199 -16.35129 -15.69687 -15.48941 -15.05976 -14.72458 -14.65812 -14.46525 -14.20364 -14.04730 -13.83538 -13.72433 -13.43107 -13.37716 -13.14485 -12.91322 -12.70736 -12.29874 -12.20577 -12.13799 -11.90125 -11.58861 -11.50641 -11.40893 -11.04677 -10.92371 -10.71322 -10.58477 -10.49551 -10.30034 -10.05502 -9.82886 -9.72772 -9.62352 -9.57887 -8.87248 -8.49514 -7.80449 -6.64933 -5.77272 -3.18789 2.18629 2.32545 2.67213 2.80502 3.38444 3.44070 3.45173 3.86675 4.06942 4.13797 4.24416 4.44028 4.50834 4.53868 4.69734 4.77651 4.79203 4.97483 5.01709 5.03323 5.15635 5.19676 5.24618 5.39061 5.40361 5.43987 5.46715 5.55725 5.65935 5.80331 5.91040 5.98000 6.05258 6.11752 6.20330 6.27466 6.28619 6.36487 6.53125 6.70162 6.82728 6.95607 7.09609 7.25495 7.60156 7.65088 7.70756 7.74560 7.82223 7.90880 8.44716 9.22246 9.85497 10.44692 11.31489 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.027336 B = 0.002065 C = 0.002042 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1024.054071 B =13558.516458 C =13709.230581 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.071 3.929 2 N -0.612 5.612 3 C 0.111 3.889 4 C 0.045 3.955 5 N -0.529 5.529 6 C 0.047 3.953 7 C 0.148 3.852 8 N -0.596 5.596 9 C -0.252 4.252 10 H 0.065 0.935 11 C 0.001 3.999 12 N -0.904 5.904 13 Si 0.903 3.097 14 H -0.285 1.285 15 H -0.290 1.290 16 H -0.283 1.283 17 C 0.178 3.822 18 C 0.028 3.972 19 C 0.517 3.483 20 O -0.526 6.526 21 C -0.110 4.110 22 H 0.105 0.895 23 C -0.118 4.118 24 C 0.109 3.891 25 N -0.721 5.721 26 C 0.524 3.476 27 O -0.555 6.555 28 C -0.136 4.136 29 H 0.061 0.939 30 H 0.073 0.927 31 H 0.077 0.923 32 H 0.095 0.905 33 H 0.084 0.916 34 H 0.025 0.975 35 H 0.070 0.930 36 H 0.027 0.973 37 H 0.060 0.940 38 H 0.056 0.944 39 H 0.026 0.974 40 H 0.254 0.746 41 H 0.027 0.973 42 H 0.088 0.912 43 H 0.024 0.976 44 H 0.064 0.936 45 H 0.081 0.919 46 H 0.097 0.903 47 H 0.069 0.931 48 H 0.083 0.917 49 H 0.400 0.600 50 H 0.114 0.886 51 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.541 -25.267 2.955 26.834 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 N -0.346 5.346 3 C -0.011 4.011 4 C -0.085 4.085 5 N -0.254 5.254 6 C -0.082 4.082 7 C 0.022 3.978 8 N -0.319 5.319 9 C -0.381 4.381 10 H 0.083 0.917 11 C -0.198 4.198 12 N -0.548 5.548 13 Si 0.733 3.267 14 H -0.211 1.211 15 H -0.216 1.216 16 H -0.209 1.209 17 C 0.052 3.948 18 C -0.101 4.101 19 C 0.304 3.696 20 O -0.401 6.401 21 C -0.132 4.132 22 H 0.123 0.877 23 C -0.156 4.156 24 C -0.015 4.015 25 N -0.374 5.374 26 C 0.311 3.689 27 O -0.433 6.433 28 C -0.176 4.176 29 H 0.080 0.920 30 H 0.091 0.909 31 H 0.095 0.905 32 H 0.113 0.887 33 H 0.102 0.898 34 H 0.044 0.956 35 H 0.089 0.911 36 H 0.045 0.955 37 H 0.079 0.921 38 H 0.074 0.926 39 H 0.044 0.956 40 H 0.064 0.936 41 H 0.045 0.955 42 H 0.106 0.894 43 H 0.043 0.957 44 H 0.082 0.918 45 H 0.100 0.900 46 H 0.116 0.884 47 H 0.088 0.912 48 H 0.101 0.899 49 H 0.236 0.764 50 H 0.132 0.868 51 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -7.756 -25.066 2.917 26.400 hybrid contribution -1.384 0.755 -0.347 1.614 sum -9.140 -24.311 2.570 26.099 Atomic orbital electron populations 1.22031 0.79573 1.03444 1.02194 1.47878 1.06989 1.06336 1.73398 1.21777 0.98348 0.83297 0.97671 1.22383 0.96386 0.93476 0.96207 1.61997 1.52102 1.03175 1.08171 1.22604 0.99334 0.97565 0.88742 1.20983 0.94726 0.89134 0.92987 1.44132 1.76980 1.05231 1.05553 1.19149 1.40146 0.82428 0.96413 0.91747 1.25038 0.99159 0.97705 0.97864 1.70017 1.42516 1.34489 1.07799 0.86360 0.79205 0.84140 0.77002 1.21145 1.21617 1.20897 1.20960 0.95818 0.90701 0.87292 1.23113 0.97465 0.95207 0.94359 1.20377 0.87949 0.84898 0.76345 1.90753 1.13569 1.87072 1.48716 1.21443 0.98011 0.93831 0.99911 0.87679 1.21747 0.97300 0.91186 1.05413 1.21464 0.88244 0.99070 0.92729 1.45515 1.36045 1.10495 1.45308 1.20008 0.82609 0.87073 0.79194 1.90790 1.28018 1.85831 1.38650 1.21909 1.01631 0.94793 0.99237 0.92020 0.90865 0.90471 0.88712 0.89820 0.95649 0.91137 0.95473 0.92112 0.92601 0.95582 0.93568 0.95459 0.89388 0.95723 0.91791 0.90018 0.88407 0.91230 0.89873 0.76424 0.86795 0.87513 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.46 8.85 59.85 0.53 0.99 16 2 N -0.61 -6.05 2.87 -181.57 -0.52 -6.57 16 3 C 0.11 1.40 4.70 -4.04 -0.02 1.38 16 4 C 0.04 0.65 5.59 -3.82 -0.02 0.63 16 5 N -0.53 -9.53 4.78 -234.03 -1.12 -10.65 16 6 C 0.05 0.87 5.58 -3.70 -0.02 0.85 16 7 C 0.15 3.23 6.69 -3.60 -0.02 3.20 16 8 N -0.60 -15.23 3.03 -171.73 -0.52 -15.76 16 9 C -0.25 -6.96 9.63 -15.06 -0.15 -7.11 16 10 H 0.06 1.75 7.88 -52.48 -0.41 1.33 16 11 C 0.00 0.02 4.94 -17.43 -0.09 -0.07 16 12 N -0.90 -26.27 11.16 55.49 0.62 -25.65 16 13 Si 0.90 21.68 29.58 -169.99 -5.03 16.65 16 14 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 15 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 16 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 17 C 0.18 4.30 5.44 -3.37 -0.02 4.28 16 18 C 0.03 0.53 5.06 -3.46 -0.02 0.51 16 19 C 0.52 5.38 7.05 -10.98 -0.08 5.30 16 20 O -0.53 -7.56 15.48 5.56 0.09 -7.48 16 21 C -0.11 -0.73 1.77 -91.56 -0.16 -0.90 16 22 H 0.11 0.51 7.39 -51.93 -0.38 0.13 16 23 C -0.12 -0.69 4.71 -26.59 -0.13 -0.82 16 24 C 0.11 0.40 7.17 -4.48 -0.03 0.37 16 25 N -0.72 -4.15 5.45 -61.39 -0.33 -4.49 16 26 C 0.52 4.53 7.71 -11.87 -0.09 4.44 16 27 O -0.55 -7.15 17.78 5.56 0.10 -7.06 16 28 C -0.14 -0.96 4.85 -28.10 -0.14 -1.10 16 29 H 0.06 0.38 7.22 -51.93 -0.38 0.00 16 30 H 0.07 0.33 5.90 -51.93 -0.31 0.02 16 31 H 0.08 0.47 7.89 -51.93 -0.41 0.06 16 32 H 0.09 1.40 7.42 -51.93 -0.39 1.01 16 33 H 0.08 1.00 5.93 -51.93 -0.31 0.69 16 34 H 0.03 0.36 8.08 -51.93 -0.42 -0.06 16 35 H 0.07 1.08 8.14 -51.93 -0.42 0.65 16 36 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 37 H 0.06 0.99 8.11 -51.93 -0.42 0.57 16 38 H 0.06 1.16 7.95 -51.93 -0.41 0.75 16 39 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 40 H 0.25 7.15 8.31 -40.82 -0.34 6.81 16 41 H 0.03 0.71 8.14 -51.92 -0.42 0.29 16 42 H 0.09 2.33 6.13 -51.93 -0.32 2.01 16 43 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 44 H 0.06 1.07 5.73 -51.93 -0.30 0.77 16 45 H 0.08 0.58 8.12 -51.93 -0.42 0.15 16 46 H 0.10 0.60 7.89 -51.93 -0.41 0.19 16 47 H 0.07 0.17 8.14 -51.93 -0.42 -0.25 16 48 H 0.08 0.18 8.14 -51.93 -0.42 -0.24 16 49 H 0.40 1.93 8.80 -40.82 -0.36 1.58 16 50 H 0.11 0.72 5.01 -51.93 -0.26 0.46 16 51 H 0.11 0.83 8.10 -51.93 -0.42 0.41 16 LS Contribution 390.07 15.07 5.88 5.88 Total: -1.00 -35.09 390.07 -9.71 -44.80 By element: Atomic # 1 Polarization: 6.77 SS G_CDS: -8.42 Total: -1.64 kcal Atomic # 6 Polarization: 12.40 SS G_CDS: -0.45 Total: 11.96 kcal Atomic # 7 Polarization: -61.23 SS G_CDS: -1.88 Total: -63.11 kcal Atomic # 8 Polarization: -14.72 SS G_CDS: 0.18 Total: -14.53 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -5.03 Total: 16.65 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -35.09 -9.71 -44.80 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753342331.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.070 kcal (2) G-P(sol) polarization free energy of solvation -35.091 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.021 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.706 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.797 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.727 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.55 seconds