Wall clock time and date at job start Tue Mar 31 2020 20:53:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.46498 * 119.99773 * 2 1 4 4 C 1.53004 * 109.47104 * 269.99715 * 3 2 1 5 5 N 1.46896 * 109.47384 * 179.97438 * 4 3 2 6 6 C 1.46898 * 111.00284 * 189.99779 * 5 4 3 7 7 C 1.53243 * 109.34050 * 187.25406 * 6 5 4 8 8 N 1.47079 * 108.52020 * 306.17160 * 7 6 5 9 9 C 1.36931 * 120.87939 * 231.18202 * 8 7 6 10 10 H 1.08008 * 119.99921 * 27.39072 * 9 8 7 11 11 C 1.38816 * 120.00321 * 207.10626 * 9 8 7 12 12 N 1.31620 * 119.99512 * 16.77573 * 11 9 8 13 13 Si 1.86796 * 120.00078 * 196.77498 * 11 9 8 14 14 H 1.48501 * 109.47222 * 60.00697 * 13 11 9 15 15 H 1.48508 * 109.46954 * 180.02562 * 13 11 9 16 16 H 1.48492 * 109.47603 * 300.00226 * 13 11 9 17 17 C 1.47076 * 118.23790 * 51.45976 * 8 7 6 18 18 C 1.46902 * 110.99947 * 314.30740 * 5 4 3 19 19 C 1.34780 * 120.00137 * 179.97438 * 2 1 3 20 20 O 1.21275 * 120.00056 * 179.97438 * 19 2 1 21 21 C 1.50699 * 119.99845 * 0.02562 * 19 2 1 22 22 H 1.09003 * 109.66894 * 299.99637 * 21 19 2 23 23 C 1.53347 * 109.67326 * 179.50195 * 21 19 2 24 24 C 1.52925 * 108.66953 * 172.75750 * 23 21 19 25 25 N 1.45754 * 110.50672 * 50.72316 * 24 23 21 26 26 C 1.33359 * 124.10304 * 340.91399 * 25 24 23 27 27 O 1.21277 * 118.24076 * 182.22017 * 26 25 24 28 28 C 1.50179 * 123.51028 * 2.24348 * 26 25 24 29 29 H 1.08999 * 109.47105 * 90.00434 * 1 2 3 30 30 H 1.09002 * 109.46826 * 209.99989 * 1 2 3 31 31 H 1.08997 * 109.47086 * 330.00381 * 1 2 3 32 32 H 1.09004 * 109.47137 * 149.99851 * 3 2 1 33 33 H 1.08996 * 109.47393 * 29.99689 * 3 2 1 34 34 H 1.08997 * 109.46785 * 59.99740 * 4 3 2 35 35 H 1.08996 * 109.46974 * 300.00230 * 4 3 2 36 36 H 1.08999 * 109.48689 * 67.29600 * 6 5 4 37 37 H 1.08996 * 109.49388 * 307.22021 * 6 5 4 38 38 H 1.09004 * 109.62472 * 186.46185 * 7 6 5 39 39 H 1.09002 * 109.62565 * 65.88233 * 7 6 5 40 40 H 0.96998 * 119.99738 * 179.97438 * 12 11 9 41 41 H 1.09008 * 109.62791 * 68.24674 * 17 8 7 42 42 H 1.08999 * 109.63209 * 188.82944 * 17 8 7 43 43 H 1.09005 * 109.48510 * 292.69991 * 18 5 4 44 44 H 1.08990 * 109.49660 * 52.75531 * 18 5 4 45 45 H 1.09002 * 109.59870 * 292.49201 * 23 21 19 46 46 H 1.08996 * 109.60153 * 52.97384 * 23 21 19 47 47 H 1.08998 * 109.27965 * 290.41008 * 24 23 21 48 48 H 1.08996 * 109.12873 * 170.93831 * 24 23 21 49 49 H 0.96999 * 117.94685 * 160.93768 * 25 24 23 50 50 H 1.09000 * 109.39635 * 222.28700 * 28 26 25 51 51 H 1.09006 * 109.32776 * 102.50632 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4525 1.7104 -1.4425 5 7 3.1864 2.9829 -1.4426 6 6 3.2434 3.5577 -2.7932 7 6 4.1651 4.7820 -2.7853 8 7 3.7072 5.7047 -1.7355 9 6 3.4850 7.0275 -2.0105 10 1 3.2091 7.3326 -3.0092 11 6 3.6086 7.9760 -1.0044 12 7 4.2459 7.6765 0.1076 13 14 2.8704 9.6772 -1.2288 14 1 1.4041 9.5578 -1.4310 15 1 3.1387 10.4966 -0.0196 16 1 3.4820 10.3299 -2.4141 17 6 3.5003 5.1701 -0.3810 18 6 2.5991 3.9294 -0.4849 19 6 2.1390 -1.1672 0.0005 20 8 3.3517 -1.1672 0.0001 21 6 1.3855 -2.4723 0.0005 22 1 0.7573 -2.5332 0.8892 23 6 2.3778 -3.6413 -0.0114 24 6 1.6002 -4.9454 0.1714 25 7 0.4927 -5.0162 -0.7735 26 6 -0.0208 -3.9594 -1.4042 27 8 -0.9700 -4.1347 -2.1385 28 6 0.5136 -2.5640 -1.2541 29 1 -0.3633 -0.0001 -1.0277 30 1 -0.3633 -0.8900 0.5138 31 1 -0.3633 0.8900 0.5138 32 1 3.1499 1.1384 0.5139 33 1 1.6084 2.0284 0.5138 34 1 1.5001 1.8406 -1.9564 35 1 3.0416 0.9507 -1.9563 36 1 2.2425 3.8580 -3.1031 37 1 3.6322 2.8141 -3.4889 38 1 4.1217 5.2792 -3.7543 39 1 5.1881 4.4687 -2.5768 40 1 4.3325 8.3393 0.8105 41 1 4.4607 4.8934 0.0541 42 1 3.0172 5.9241 0.2404 43 1 1.6072 4.2245 -0.8271 44 1 2.5203 3.4552 0.4933 45 1 2.9071 -3.6619 -0.9640 46 1 3.0917 -3.5233 0.8038 47 1 1.2100 -4.9922 1.1881 48 1 2.2712 -5.7878 0.0039 49 1 0.1047 -5.8866 -0.9546 50 1 -0.3184 -1.8649 -1.1689 51 1 1.1112 -2.3104 -2.1298 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753342331.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:53:40 Heat of formation + Delta-G solvation = -55.425284 kcal Electronic energy + Delta-G solvation = -30267.649478 eV Core-core repulsion = 26201.888028 eV Total energy + Delta-G solvation = -4065.761450 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -41.88159 -40.61318 -39.70873 -37.48025 -37.00299 -36.01688 -34.32446 -33.32830 -31.67102 -30.89740 -30.32536 -28.10855 -27.66203 -25.97476 -25.18457 -24.34482 -23.98862 -22.53084 -20.82690 -20.38241 -20.04963 -18.75129 -18.40827 -18.16212 -17.52115 -17.29725 -16.76433 -16.38320 -16.30138 -16.00627 -15.82629 -15.43111 -15.32974 -15.17264 -15.08160 -14.99194 -14.68862 -14.55566 -14.35091 -13.84184 -13.79288 -13.25968 -13.15885 -13.06384 -12.93350 -12.75937 -12.70404 -12.59835 -12.40841 -12.16924 -12.07221 -12.05470 -11.99834 -11.85213 -11.57194 -11.39660 -11.34875 -10.60621 -10.58451 -10.07292 -9.73473 -9.27115 -8.68325 -7.87570 -5.33198 1.47240 1.49039 1.50544 1.56429 1.57620 1.89109 2.31780 2.50932 3.03491 3.27105 3.28902 3.56815 3.63585 3.66986 3.74334 3.90394 3.98602 4.12261 4.20768 4.25555 4.30083 4.33392 4.40207 4.44639 4.54202 4.56418 4.58161 4.62836 4.67177 4.71490 4.80418 4.83676 4.88411 4.95444 4.97147 5.00776 5.01646 5.17418 5.21191 5.34939 5.44493 5.60786 5.68261 5.81520 6.15399 6.22073 6.29403 6.35251 6.37497 7.11167 7.12983 7.16935 7.82950 8.38141 9.19115 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.027336 B = 0.002065 C = 0.002042 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1024.054071 B =13558.516458 C =13709.230581 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.062 3.938 2 N -0.610 5.610 3 C 0.118 3.882 4 C 0.055 3.945 5 N -0.544 5.544 6 C 0.058 3.942 7 C 0.144 3.856 8 N -0.614 5.614 9 C -0.266 4.266 10 H 0.067 0.933 11 C -0.052 4.052 12 N -0.936 5.936 13 Si 0.971 3.029 14 H -0.277 1.277 15 H -0.293 1.293 16 H -0.276 1.276 17 C 0.184 3.816 18 C 0.047 3.953 19 C 0.514 3.486 20 O -0.572 6.572 21 C -0.099 4.099 22 H 0.133 0.867 23 C -0.119 4.119 24 C 0.113 3.887 25 N -0.711 5.711 26 C 0.523 3.477 27 O -0.604 6.604 28 C -0.130 4.130 29 H 0.069 0.931 30 H 0.098 0.902 31 H 0.085 0.915 32 H 0.070 0.930 33 H 0.094 0.906 34 H 0.039 0.961 35 H 0.063 0.937 36 H 0.028 0.972 37 H 0.086 0.914 38 H 0.061 0.939 39 H 0.012 0.988 40 H 0.251 0.749 41 H -0.004 1.004 42 H 0.060 0.940 43 H 0.025 0.975 44 H 0.089 0.911 45 H 0.065 0.935 46 H 0.096 0.904 47 H 0.093 0.907 48 H 0.104 0.896 49 H 0.406 0.594 50 H 0.125 0.875 51 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.446 -26.866 3.161 28.998 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 N -0.343 5.343 3 C -0.005 4.005 4 C -0.074 4.074 5 N -0.270 5.270 6 C -0.071 4.071 7 C 0.018 3.982 8 N -0.339 5.339 9 C -0.396 4.396 10 H 0.085 0.915 11 C -0.247 4.247 12 N -0.582 5.582 13 Si 0.799 3.201 14 H -0.203 1.203 15 H -0.219 1.219 16 H -0.202 1.202 17 C 0.058 3.942 18 C -0.082 4.082 19 C 0.303 3.697 20 O -0.451 6.451 21 C -0.120 4.120 22 H 0.151 0.849 23 C -0.157 4.157 24 C -0.011 4.011 25 N -0.361 5.361 26 C 0.311 3.689 27 O -0.486 6.486 28 C -0.169 4.169 29 H 0.087 0.913 30 H 0.117 0.883 31 H 0.104 0.896 32 H 0.088 0.912 33 H 0.112 0.888 34 H 0.057 0.943 35 H 0.082 0.918 36 H 0.046 0.954 37 H 0.104 0.896 38 H 0.080 0.920 39 H 0.030 0.970 40 H 0.060 0.940 41 H 0.014 0.986 42 H 0.078 0.922 43 H 0.043 0.957 44 H 0.107 0.893 45 H 0.084 0.916 46 H 0.114 0.886 47 H 0.111 0.889 48 H 0.122 0.878 49 H 0.243 0.757 50 H 0.143 0.857 51 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -9.673 -26.715 3.126 28.584 hybrid contribution -0.694 1.194 -0.421 1.444 sum -10.367 -25.521 2.705 27.679 Atomic orbital electron populations 1.22310 0.77146 1.05213 1.03248 1.47940 1.08377 1.05203 1.72745 1.21519 0.97935 0.84984 0.96104 1.22317 0.96275 0.91133 0.97660 1.61895 1.53311 1.04076 1.07716 1.22424 0.98459 0.96605 0.89595 1.21116 0.94826 0.90052 0.92204 1.44431 1.77456 1.05355 1.06616 1.19492 1.39768 0.83676 0.96626 0.91535 1.25832 0.99730 1.01447 0.97686 1.70186 1.43884 1.35539 1.08549 0.85296 0.78563 0.79538 0.76752 1.20284 1.21915 1.20226 1.20749 0.94965 0.92082 0.86393 1.22778 0.95796 0.93449 0.96143 1.21021 0.87585 0.86000 0.75105 1.90736 1.15738 1.87761 1.50828 1.21432 0.97949 0.91810 1.00793 0.84934 1.21741 0.97343 0.92063 1.04548 1.21623 0.87716 0.98470 0.93244 1.45534 1.35831 1.10178 1.44605 1.20186 0.82018 0.87943 0.78751 1.90772 1.30313 1.86543 1.40995 1.21851 1.01783 0.94313 0.98991 0.91280 0.88314 0.89647 0.91169 0.88820 0.94284 0.91818 0.95394 0.89587 0.92024 0.96972 0.93993 0.98621 0.92192 0.95663 0.89343 0.91649 0.88572 0.88855 0.87765 0.75732 0.85701 0.88433 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.61 8.85 127.77 1.13 1.74 16 2 N -0.61 -10.82 2.87 -846.75 -2.43 -13.25 16 3 C 0.12 2.81 4.70 86.38 0.41 3.21 16 4 C 0.05 1.51 5.59 86.31 0.48 1.99 16 5 N -0.54 -19.13 4.78 -894.32 -4.27 -23.41 16 6 C 0.06 2.08 5.58 86.38 0.48 2.56 16 7 C 0.14 6.29 6.69 86.35 0.58 6.86 16 8 N -0.61 -32.00 3.03 -697.22 -2.11 -34.11 16 9 C -0.27 -14.87 9.63 84.04 0.81 -14.06 16 10 H 0.07 3.61 7.88 -2.91 -0.02 3.59 16 11 C -0.05 -2.91 4.94 84.86 0.42 -2.49 16 12 N -0.94 -55.90 11.16 21.65 0.24 -55.66 16 13 Si 0.97 44.97 29.58 68.60 2.03 47.00 16 14 H -0.28 -12.37 7.11 99.48 0.71 -11.66 16 15 H -0.29 -13.59 7.11 99.48 0.71 -12.89 16 16 H -0.28 -12.43 7.11 99.48 0.71 -11.72 16 17 C 0.18 9.13 5.44 86.50 0.47 9.60 16 18 C 0.05 1.78 5.06 86.54 0.44 2.22 16 19 C 0.51 9.94 7.05 87.66 0.62 10.56 16 20 O -0.57 -16.34 15.48 -3.01 -0.05 -16.38 16 21 C -0.10 -1.08 1.77 -11.40 -0.02 -1.10 16 22 H 0.13 0.76 7.39 -2.39 -0.02 0.74 16 23 C -0.12 -1.16 4.71 30.69 0.14 -1.01 16 24 C 0.11 0.47 7.17 86.49 0.62 1.09 16 25 N -0.71 -6.46 5.45 -467.31 -2.55 -9.01 16 26 C 0.52 8.15 7.71 87.71 0.68 8.83 16 27 O -0.60 -15.08 17.78 -3.02 -0.05 -15.14 16 28 C -0.13 -1.58 4.85 29.71 0.14 -1.43 16 29 H 0.07 0.62 7.22 -2.39 -0.02 0.61 16 30 H 0.10 0.48 5.90 -2.39 -0.01 0.47 16 31 H 0.08 0.75 7.89 -2.39 -0.02 0.73 16 32 H 0.07 2.05 7.42 -2.38 -0.02 2.04 16 33 H 0.09 2.03 5.93 -2.39 -0.01 2.02 16 34 H 0.04 0.99 8.08 -2.39 -0.02 0.97 16 35 H 0.06 1.87 8.14 -2.39 -0.02 1.85 16 36 H 0.03 1.00 8.14 -2.39 -0.02 0.98 16 37 H 0.09 2.63 8.11 -2.39 -0.02 2.62 16 38 H 0.06 2.56 7.95 -2.39 -0.02 2.54 16 39 H 0.01 0.57 8.14 -2.39 -0.02 0.55 16 40 H 0.25 14.49 8.31 -92.71 -0.77 13.72 16 41 H 0.00 -0.24 8.14 -2.38 -0.02 -0.26 16 42 H 0.06 3.29 6.13 -2.39 -0.01 3.27 16 43 H 0.03 0.95 8.14 -2.38 -0.02 0.93 16 44 H 0.09 2.87 5.73 -2.39 -0.01 2.86 16 45 H 0.06 0.86 8.12 -2.39 -0.02 0.84 16 46 H 0.10 1.02 7.89 -2.39 -0.02 1.00 16 47 H 0.09 0.06 8.14 -2.39 -0.02 0.04 16 48 H 0.10 0.09 8.14 -2.39 -0.02 0.07 16 49 H 0.41 3.02 8.80 -92.71 -0.82 2.20 16 50 H 0.13 1.24 5.01 -2.39 -0.01 1.22 16 51 H 0.10 1.41 8.10 -2.38 -0.02 1.39 16 Total: -1.00 -78.99 390.07 -1.67 -80.67 By element: Atomic # 1 Polarization: 10.60 SS G_CDS: 0.12 Total: 10.72 kcal Atomic # 6 Polarization: 21.17 SS G_CDS: 7.40 Total: 28.57 kcal Atomic # 7 Polarization: -124.31 SS G_CDS: -11.12 Total: -135.44 kcal Atomic # 8 Polarization: -31.42 SS G_CDS: -0.10 Total: -31.52 kcal Atomic # 14 Polarization: 44.97 SS G_CDS: 2.03 Total: 47.00 kcal Total: -78.99 -1.67 -80.67 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753342331.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.242 kcal (2) G-P(sol) polarization free energy of solvation -78.994 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.752 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.674 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.667 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.425 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds