Wall clock time and date at job start Tue Mar 31 2020 21:48:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86789 * 120.00188 * 2 1 4 4 H 1.48508 * 109.47342 * 234.48998 * 3 2 1 5 5 H 1.48500 * 109.47225 * 354.49168 * 3 2 1 6 6 H 1.48499 * 109.47361 * 114.49150 * 3 2 1 7 7 C 1.38820 * 119.99875 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99688 * 15.14182 * 7 2 1 9 9 N 1.36937 * 120.00182 * 195.14155 * 7 2 1 10 10 C 1.47024 * 125.64167 * 9.75491 * 9 7 2 11 11 C 1.54338 * 107.26010 * 178.84693 * 10 9 7 12 12 C 1.55159 * 103.02244 * 338.14091 * 11 10 9 13 13 O 1.42899 * 111.00004 * 277.23231 * 12 11 10 14 14 C 1.53000 * 111.00235 * 153.38010 * 12 11 10 15 15 N 1.46504 * 109.46815 * 191.34846 * 14 12 11 16 16 C 1.34772 * 120.00077 * 180.02562 * 15 14 12 17 17 O 1.21280 * 119.99905 * 0.02562 * 16 15 14 18 18 C 1.50697 * 120.00053 * 180.02562 * 16 15 14 19 19 C 1.53008 * 109.47239 * 179.97438 * 18 16 15 20 20 C 1.52995 * 109.47007 * 179.97438 * 19 18 16 21 21 C 1.53001 * 109.46830 * 180.02562 * 20 19 18 22 22 C 1.53004 * 109.46798 * 294.99944 * 21 20 19 23 23 C 1.53008 * 109.46919 * 180.02562 * 22 21 20 24 24 C 1.52992 * 109.47153 * 59.99880 * 23 22 21 25 25 C 1.53004 * 109.47306 * 299.99883 * 24 23 22 26 26 C 1.52998 * 109.47178 * 175.00239 * 21 20 19 27 27 C 1.47421 * 125.64949 * 190.05741 * 9 7 2 28 28 H 0.97006 * 120.00193 * 182.97771 * 1 2 3 29 29 H 1.09001 * 109.88319 * 298.38683 * 10 9 7 30 30 H 1.08997 * 109.88351 * 59.56057 * 10 9 7 31 31 H 1.09001 * 110.85118 * 219.66934 * 11 10 9 32 32 H 1.09002 * 110.51208 * 96.45195 * 11 10 9 33 33 H 0.96702 * 113.99347 * 173.64640 * 13 12 11 34 34 H 1.08998 * 109.47385 * 311.34929 * 14 12 11 35 35 H 1.08995 * 109.47255 * 71.35220 * 14 12 11 36 36 H 0.97008 * 119.99956 * 0.02562 * 15 14 12 37 37 H 1.08998 * 109.47176 * 300.00060 * 18 16 15 38 38 H 1.09000 * 109.47247 * 60.00432 * 18 16 15 39 39 H 1.08998 * 109.47126 * 300.00140 * 19 18 16 40 40 H 1.09000 * 109.46608 * 60.00090 * 19 18 16 41 41 H 1.08998 * 109.47347 * 300.00072 * 20 19 18 42 42 H 1.09000 * 109.47308 * 60.00586 * 20 19 18 43 43 H 1.09000 * 109.47778 * 55.00083 * 21 20 19 44 44 H 1.08996 * 109.47472 * 299.99946 * 22 21 20 45 45 H 1.08997 * 109.47170 * 60.00217 * 22 21 20 46 46 H 1.09005 * 109.47040 * 300.00011 * 23 22 21 47 47 H 1.09000 * 109.47148 * 180.02562 * 23 22 21 48 48 H 1.09002 * 109.47259 * 180.02562 * 24 23 22 49 49 H 1.08996 * 109.47095 * 60.00409 * 24 23 22 50 50 H 1.08991 * 109.47268 * 299.99855 * 25 24 23 51 51 H 1.09003 * 109.46761 * 180.02562 * 25 24 23 52 52 H 1.08999 * 109.47288 * 299.99529 * 26 21 20 53 53 H 1.09005 * 109.47149 * 59.99709 * 26 21 20 54 54 H 1.08993 * 110.36637 * 322.93533 * 27 9 7 55 55 H 1.09002 * 110.36158 * 85.26086 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6176 0.0000 4 1 3.2020 1.6397 -1.1397 5 1 1.2908 2.7431 -0.1344 6 1 3.0003 1.7561 1.2741 7 6 2.0102 -1.2022 -0.0005 8 1 1.4983 -2.1212 -0.2453 9 7 3.3439 -1.2230 0.3092 10 6 4.1149 -0.0953 0.8527 11 6 5.5605 -0.5909 1.0691 12 6 5.3925 -2.1307 1.1588 13 8 5.0075 -2.5280 2.4764 14 6 6.6719 -2.8482 0.7237 15 7 6.3983 -4.2781 0.5602 16 6 7.3848 -5.1138 0.1795 17 8 8.4991 -4.6820 -0.0272 18 6 7.1032 -6.5845 0.0107 19 6 8.3826 -7.3022 -0.4243 20 6 8.0968 -8.7955 -0.5950 21 6 9.3764 -9.5131 -1.0293 22 6 9.7922 -9.0193 -2.4165 23 6 11.0715 -9.7375 -2.8511 24 6 10.8179 -11.2454 -2.9014 25 6 10.4021 -11.7392 -1.5142 26 6 9.1234 -11.0212 -1.0795 27 6 4.2458 -2.3779 0.1471 28 1 -0.4851 -0.8390 0.0436 29 1 4.1073 0.7341 0.1455 30 1 3.6875 0.2218 1.8039 31 1 5.9722 -0.1931 1.9967 32 1 6.1882 -0.3202 0.2201 33 1 4.7964 -3.4682 2.5577 34 1 7.0168 -2.4336 -0.2234 35 1 7.4419 -2.7101 1.4827 36 1 5.5070 -4.6235 0.7259 37 1 6.7575 -6.9993 0.9576 38 1 6.3337 -6.7223 -0.7489 39 1 8.7279 -6.8873 -1.3712 40 1 9.1524 -7.1644 0.3350 41 1 7.7518 -9.2100 0.3522 42 1 7.3269 -8.9336 -1.3541 43 1 10.1720 -9.3018 -0.3149 44 1 8.9967 -9.2307 -3.1310 45 1 9.9725 -7.9450 -2.3808 46 1 11.8673 -9.5265 -2.1367 47 1 11.3680 -9.3854 -3.8392 48 1 11.7294 -11.7570 -3.2106 49 1 10.0222 -11.4564 -3.6158 50 1 11.1977 -11.5283 -0.7999 51 1 10.2218 -12.8136 -1.5500 52 1 8.8271 -11.3730 -0.0913 53 1 8.3278 -11.2326 -1.7940 54 1 3.7227 -3.3040 0.3853 55 1 4.6378 -2.4132 -0.8694 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754758426.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:48:48 Heat of formation + Delta-G solvation = -120.450544 kcal Electronic energy + Delta-G solvation = -29597.593852 eV Core-core repulsion = 25632.553039 eV Total energy + Delta-G solvation = -3965.040813 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -41.16439 -40.12343 -39.60396 -36.99525 -35.67754 -35.31041 -34.36864 -32.29064 -31.66185 -31.51226 -30.17731 -28.15270 -26.90698 -24.96286 -23.83140 -23.09520 -22.79669 -21.52609 -21.44575 -21.18017 -20.56993 -19.58910 -18.54993 -17.66009 -17.27806 -16.93033 -16.61648 -16.30937 -16.21582 -15.82528 -15.48755 -15.30438 -15.07283 -15.03982 -14.87954 -14.76853 -14.37300 -14.33932 -13.88979 -13.50956 -13.44280 -13.28834 -13.17922 -13.00995 -12.92066 -12.85498 -12.67156 -12.32541 -12.19671 -12.02423 -11.95722 -11.82602 -11.80265 -11.49741 -11.49085 -11.28394 -11.25022 -11.05709 -10.90006 -10.79285 -10.73614 -10.62447 -10.15726 -9.09807 -8.65815 -5.47447 1.40635 1.48908 1.65478 1.70646 2.14471 2.54011 3.05417 3.09355 3.24928 3.49507 3.67987 3.70130 3.77961 3.79245 3.84468 3.92194 4.11353 4.16295 4.26051 4.33036 4.35921 4.38951 4.53465 4.56595 4.62724 4.64027 4.64746 4.68425 4.70613 4.75976 4.80662 4.81843 4.83647 4.86414 4.89424 5.01918 5.03042 5.12747 5.14871 5.17589 5.23587 5.28408 5.32052 5.36277 5.40279 5.42782 5.47897 5.51408 5.57665 5.66722 6.08381 6.48028 6.72567 6.81006 7.22547 7.43041 8.06797 8.87353 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.024233 B = 0.001740 C = 0.001706 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1155.184000 B =16085.244439 C =16404.723161 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.964 5.964 2 C -0.082 4.082 3 Si 1.108 2.892 4 H -0.282 1.282 5 H -0.313 1.313 6 H -0.255 1.255 7 C -0.310 4.310 8 H 0.050 0.950 9 N -0.628 5.628 10 C 0.102 3.898 11 C -0.109 4.109 12 C 0.121 3.879 13 O -0.552 6.552 14 C 0.118 3.882 15 N -0.723 5.723 16 C 0.510 3.490 17 O -0.585 6.585 18 C -0.136 4.136 19 C -0.100 4.100 20 C -0.109 4.109 21 C -0.085 4.085 22 C -0.117 4.117 23 C -0.122 4.122 24 C -0.119 4.119 25 C -0.120 4.120 26 C -0.112 4.112 27 C 0.111 3.889 28 H 0.248 0.752 29 H 0.028 0.972 30 H 0.031 0.969 31 H 0.100 0.900 32 H 0.107 0.893 33 H 0.386 0.614 34 H 0.075 0.925 35 H 0.078 0.922 36 H 0.411 0.589 37 H 0.118 0.882 38 H 0.111 0.889 39 H 0.055 0.945 40 H 0.053 0.947 41 H 0.074 0.926 42 H 0.069 0.931 43 H 0.062 0.938 44 H 0.061 0.939 45 H 0.054 0.946 46 H 0.057 0.943 47 H 0.060 0.940 48 H 0.063 0.937 49 H 0.060 0.940 50 H 0.058 0.942 51 H 0.066 0.934 52 H 0.066 0.934 53 H 0.062 0.938 54 H 0.052 0.948 55 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.862 -23.044 -0.756 32.470 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.608 5.608 2 C -0.274 4.274 3 Si 0.937 3.063 4 H -0.210 1.210 5 H -0.242 1.242 6 H -0.180 1.180 7 C -0.438 4.438 8 H 0.068 0.932 9 N -0.355 5.355 10 C -0.022 4.022 11 C -0.147 4.147 12 C 0.079 3.921 13 O -0.359 6.359 14 C -0.007 4.007 15 N -0.376 5.376 16 C 0.298 3.702 17 O -0.465 6.465 18 C -0.175 4.175 19 C -0.138 4.138 20 C -0.147 4.147 21 C -0.104 4.104 22 C -0.154 4.154 23 C -0.159 4.159 24 C -0.157 4.157 25 C -0.158 4.158 26 C -0.150 4.150 27 C -0.014 4.014 28 H 0.056 0.944 29 H 0.045 0.955 30 H 0.049 0.951 31 H 0.119 0.881 32 H 0.125 0.875 33 H 0.235 0.765 34 H 0.094 0.906 35 H 0.096 0.904 36 H 0.248 0.752 37 H 0.136 0.864 38 H 0.130 0.870 39 H 0.074 0.926 40 H 0.072 0.928 41 H 0.092 0.908 42 H 0.087 0.913 43 H 0.080 0.920 44 H 0.079 0.921 45 H 0.073 0.927 46 H 0.075 0.925 47 H 0.078 0.922 48 H 0.082 0.918 49 H 0.079 0.921 50 H 0.077 0.923 51 H 0.085 0.915 52 H 0.085 0.915 53 H 0.081 0.919 54 H 0.070 0.930 55 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 23.482 -20.500 -0.828 31.183 hybrid contribution -1.010 -2.215 -0.253 2.448 sum 22.472 -22.715 -1.082 31.971 Atomic orbital electron populations 1.71013 1.06952 1.28316 1.54541 1.27067 0.96549 1.04514 0.99311 0.83389 0.72516 0.72166 0.78253 1.20999 1.24238 1.18034 1.20061 0.84288 0.94884 1.44582 0.93161 1.44762 1.05459 1.10117 1.75162 1.22087 0.92729 0.91293 0.96084 1.22633 0.95231 0.92337 1.04474 1.22407 0.91595 0.95254 0.82883 1.86568 1.89902 1.31465 1.28012 1.21720 0.96171 0.80786 1.02053 1.45995 1.13952 1.07746 1.69893 1.21390 0.83760 0.90098 0.74914 1.90687 1.24330 1.79385 1.52081 1.21765 1.01116 0.88859 1.05774 1.21321 0.95963 0.95143 1.01388 1.21612 0.97529 0.93352 1.02165 1.21135 0.97471 0.95112 0.96652 1.21634 0.97629 0.99387 0.96769 1.21548 0.97630 0.95692 1.01064 1.21535 1.01287 0.95432 0.97409 1.21533 0.97707 0.99808 0.96745 1.21564 0.97710 0.94149 1.01564 1.22384 0.90917 0.91044 0.97066 0.94353 0.95509 0.95089 0.88119 0.87489 0.76520 0.90640 0.90355 0.75249 0.86404 0.87045 0.92643 0.92776 0.90778 0.91257 0.91981 0.92066 0.92710 0.92467 0.92164 0.91834 0.92080 0.92332 0.91519 0.91544 0.91918 0.92955 0.94396 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -62.47 13.71 21.65 0.30 -62.17 16 2 C -0.08 -4.91 5.50 84.86 0.47 -4.44 16 3 Si 1.11 54.50 24.52 68.60 1.68 56.18 16 4 H -0.28 -12.98 6.83 99.48 0.68 -12.31 16 5 H -0.31 -15.87 7.11 99.48 0.71 -15.16 16 6 H -0.26 -11.23 5.41 99.48 0.54 -10.69 16 7 C -0.31 -17.83 10.56 84.04 0.89 -16.94 16 8 H 0.05 3.08 8.06 -2.91 -0.02 3.06 16 9 N -0.63 -29.62 3.33 -691.97 -2.30 -31.93 16 10 C 0.10 4.28 4.61 86.73 0.40 4.68 16 11 C -0.11 -3.28 6.15 31.79 0.20 -3.08 16 12 C 0.12 3.38 0.95 -9.40 -0.01 3.37 16 13 O -0.55 -15.70 13.18 -148.98 -1.96 -17.67 16 14 C 0.12 2.72 4.97 86.38 0.43 3.15 16 15 N -0.72 -13.90 5.19 -463.07 -2.40 -16.31 16 16 C 0.51 10.80 7.83 87.66 0.69 11.49 16 17 O -0.58 -17.45 15.98 -3.03 -0.05 -17.50 16 18 C -0.14 -1.80 5.70 29.85 0.17 -1.63 16 19 C -0.10 -1.51 4.26 30.60 0.13 -1.38 16 20 C -0.11 -1.20 4.68 30.59 0.14 -1.06 16 21 C -0.09 -1.02 2.19 -10.79 -0.02 -1.04 16 22 C -0.12 -1.55 4.96 30.60 0.15 -1.40 16 23 C -0.12 -1.50 5.92 30.59 0.18 -1.32 16 24 C -0.12 -1.27 5.92 30.59 0.18 -1.08 16 25 C -0.12 -1.21 5.92 30.58 0.18 -1.03 16 26 C -0.11 -1.15 5.20 30.58 0.16 -0.99 16 27 C 0.11 3.91 5.74 86.86 0.50 4.41 16 28 H 0.25 16.04 8.73 -92.70 -0.81 15.23 16 29 H 0.03 1.17 3.89 -2.39 -0.01 1.16 16 30 H 0.03 1.41 6.70 -2.39 -0.02 1.40 16 31 H 0.10 2.70 8.14 -2.39 -0.02 2.68 16 32 H 0.11 2.71 7.94 -2.39 -0.02 2.69 16 33 H 0.39 7.87 8.58 -74.06 -0.64 7.24 16 34 H 0.08 1.84 8.00 -2.39 -0.02 1.82 16 35 H 0.08 1.85 8.14 -2.39 -0.02 1.83 16 36 H 0.41 6.15 7.32 -92.70 -0.68 5.47 16 37 H 0.12 1.02 8.14 -2.39 -0.02 1.00 16 38 H 0.11 1.14 8.14 -2.39 -0.02 1.12 16 39 H 0.05 1.03 6.52 -2.39 -0.02 1.01 16 40 H 0.05 0.97 8.10 -2.39 -0.02 0.95 16 41 H 0.07 0.68 8.14 -2.39 -0.02 0.66 16 42 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 43 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 44 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 45 H 0.05 0.85 6.57 -2.39 -0.02 0.84 16 46 H 0.06 0.74 8.14 -2.38 -0.02 0.72 16 47 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 48 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 49 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 50 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 51 H 0.07 0.58 8.14 -2.39 -0.02 0.56 16 52 H 0.07 0.61 8.14 -2.39 -0.02 0.59 16 53 H 0.06 0.64 8.14 -2.38 -0.02 0.62 16 54 H 0.05 1.74 7.80 -2.39 -0.02 1.72 16 55 H 0.04 1.32 8.04 -2.39 -0.02 1.30 16 Total: -1.00 -76.76 412.84 -0.60 -77.36 By element: Atomic # 1 Polarization: 21.02 SS G_CDS: -0.69 Total: 20.33 kcal Atomic # 6 Polarization: -13.13 SS G_CDS: 4.83 Total: -8.30 kcal Atomic # 7 Polarization: -105.99 SS G_CDS: -4.41 Total: -110.40 kcal Atomic # 8 Polarization: -33.15 SS G_CDS: -2.01 Total: -35.16 kcal Atomic # 14 Polarization: 54.50 SS G_CDS: 1.68 Total: 56.18 kcal Total: -76.76 -0.60 -77.36 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754758426.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.095 kcal (2) G-P(sol) polarization free energy of solvation -76.759 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.854 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.597 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.356 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.451 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds