Wall clock time and date at job start Tue Mar 31 2020 21:46:37
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31618 * 1
3 3 Si 1.86804 * 120.00198 * 2 1
4 4 H 1.48496 * 109.47627 * 180.02562 * 3 2 1
5 5 H 1.48502 * 109.47212 * 300.00492 * 3 2 1
6 6 H 1.48507 * 109.46906 * 59.99886 * 3 2 1
7 7 C 1.38807 * 120.00122 * 180.02562 * 2 1 3
8 8 H 1.07999 * 120.00233 * 168.47062 * 7 2 1
9 9 N 1.36938 * 120.00003 * 348.46351 * 7 2 1
10 10 C 1.46919 * 120.63095 * 149.46459 * 9 7 2
11 11 C 1.53201 * 108.77258 * 126.37326 * 10 9 7
12 12 C 1.53035 * 109.31089 * 54.63752 * 11 10 9
13 13 C 1.53040 * 109.53845 * 298.62936 * 12 11 10
14 14 C 1.52998 * 109.49570 * 181.31765 * 13 12 11
15 15 O 1.42899 * 109.46741 * 174.84789 * 14 13 12
16 16 N 1.46500 * 109.50096 * 301.38672 * 13 12 11
17 17 C 1.34780 * 119.99714 * 296.94107 * 16 13 12
18 18 O 1.21276 * 120.00123 * 5.05629 * 17 16 13
19 19 C 1.50695 * 119.99729 * 185.06659 * 17 16 13
20 20 C 1.53000 * 109.47359 * 179.97438 * 19 17 16
21 21 C 1.52996 * 109.47446 * 179.97438 * 20 19 17
22 22 C 1.53001 * 109.47313 * 179.97438 * 21 20 19
23 23 C 1.54266 * 110.03532 * 292.17065 * 22 21 20
24 24 C 1.54887 * 104.19349 * 217.10168 * 23 22 21
25 25 C 1.54892 * 102.75025 * 37.94368 * 24 23 22
26 26 C 1.53869 * 110.03434 * 174.99747 * 22 21 20
27 27 C 1.46927 * 120.62825 * 329.44943 * 9 7 2
28 28 H 0.97006 * 119.99802 * 359.97438 * 1 2 3
29 29 H 1.09004 * 109.59059 * 6.58665 * 10 9 7
30 30 H 1.08999 * 109.70665 * 246.22828 * 10 9 7
31 31 H 1.08995 * 109.49839 * 294.67847 * 11 10 9
32 32 H 1.09006 * 109.49168 * 174.58669 * 11 10 9
33 33 H 1.09006 * 109.45709 * 178.61480 * 12 11 10
34 34 H 1.08998 * 109.46409 * 58.65531 * 12 11 10
35 35 H 1.09004 * 109.47097 * 54.85082 * 14 13 12
36 36 H 1.09000 * 109.47555 * 294.84540 * 14 13 12
37 37 H 0.96700 * 114.00338 * 180.02562 * 15 14 13
38 38 H 0.97000 * 119.99825 * 116.93775 * 16 13 12
39 39 H 1.09006 * 109.47126 * 299.99533 * 19 17 16
40 40 H 1.09000 * 109.47216 * 59.99508 * 19 17 16
41 41 H 1.09006 * 109.46854 * 299.99986 * 20 19 17
42 42 H 1.09000 * 109.47124 * 59.99739 * 20 19 17
43 43 H 1.08996 * 109.47211 * 300.00087 * 21 20 19
44 44 H 1.09000 * 109.47050 * 59.99844 * 21 20 19
45 45 H 1.09008 * 110.01054 * 53.60654 * 22 21 20
46 46 H 1.08998 * 110.48015 * 335.78093 * 23 22 21
47 47 H 1.08996 * 110.48582 * 98.42407 * 23 22 21
48 48 H 1.08993 * 110.75951 * 279.62295 * 24 23 22
49 49 H 1.09000 * 110.75016 * 156.25525 * 24 23 22
50 50 H 1.08995 * 110.48673 * 203.38016 * 25 24 23
51 51 H 1.08991 * 110.48961 * 80.72867 * 25 24 23
52 52 H 1.09001 * 110.03695 * 238.57512 * 26 22 21
53 53 H 1.09002 * 110.03033 * 359.95532 * 26 22 21
54 54 H 1.08998 * 109.58637 * 113.83954 * 27 9 7
55 55 H 1.08996 * 109.58826 * 353.41004 * 27 9 7
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3162 0.0000 0.0000
3 14 2.2503 1.6177 0.0000
4 1 3.7102 1.3465 -0.0006
5 1 1.8915 2.3965 -1.2124
6 1 1.8915 2.3965 1.2126
7 6 2.0102 -1.2021 -0.0005
8 1 3.0739 -1.2115 -0.1875
9 7 1.3463 -2.3761 0.2361
10 6 1.8056 -3.6318 -0.3730
11 6 1.9988 -4.6744 0.7327
12 6 0.7041 -4.8034 1.5384
13 6 0.3729 -3.4605 2.1934
14 6 -0.9037 -3.5992 3.0252
15 8 -1.1465 -2.3809 3.7316
16 7 1.4805 -3.0535 3.0617
17 6 1.8101 -3.8054 4.1306
18 8 1.2517 -4.8648 4.3222
19 6 2.8724 -3.3296 5.0877
20 6 3.0518 -4.3603 6.2041
21 6 4.1307 -3.8775 7.1755
22 6 4.3097 -4.9080 8.2922
23 6 3.0485 -4.9503 9.1794
24 6 3.5983 -5.1671 10.6111
25 6 4.8843 -4.3037 10.6177
26 6 5.4769 -4.4970 9.2066
27 6 0.1613 -2.4041 1.1043
28 1 -0.4850 0.8401 0.0004
29 1 2.7524 -3.4640 -0.8864
30 1 1.0618 -3.9883 -1.0855
31 1 2.8078 -4.3600 1.3919
32 1 2.2465 -5.6372 0.2856
33 1 0.8309 -5.5625 2.3104
34 1 -0.1097 -5.0939 0.8740
35 1 -0.7860 -4.4153 3.7381
36 1 -1.7457 -3.8109 2.3662
37 1 -1.9419 -2.3968 4.2814
38 1 1.9766 -2.2430 2.8672
39 1 3.8140 -3.2052 4.5529
40 1 2.5711 -2.3753 5.5197
41 1 2.1101 -4.4844 6.7388
42 1 3.3529 -5.3148 5.7723
43 1 5.0723 -3.7538 6.6405
44 1 3.8301 -2.9229 7.6072
45 1 4.4993 -5.8925 7.8644
46 1 2.5069 -4.0064 9.1176
47 1 2.4049 -5.7803 8.8882
48 1 3.8373 -6.2173 10.7782
49 1 2.8882 -4.8081 11.3560
50 1 5.5803 -4.6619 11.3762
51 1 4.6391 -3.2554 10.7882
52 1 6.2327 -5.2823 9.2234
53 1 5.9164 -3.5637 8.8544
54 1 -0.7185 -2.6594 0.5136
55 1 0.0232 -1.4263 1.5656
RHF calculation, no. of doubly occupied orbitals= 66
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001754861377.mol2 55
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 21:46:37
Heat of formation + Delta-G solvation = -118.703837 kcal
Electronic energy + Delta-G solvation = -31345.173669 eV
Core-core repulsion = 27380.208599 eV
Total energy + Delta-G solvation = -3964.965070 eV
No. of doubly occupied orbitals = 66
Molecular weight
(most abundant/longest-lived isotopes) = 338.236 amu
Computer time = 1.40 seconds
Orbital eigenvalues (eV)
-41.36999 -39.51535 -38.86402 -37.36916 -35.44386 -35.04479 -34.16258 -32.14610
-31.56207 -30.44200 -29.51205 -27.32368 -26.63436 -26.49792 -23.98826 -23.16317
-22.19550 -21.51590 -21.07302 -20.40204 -20.04503 -18.78015 -18.19324 -17.94602
-17.03107 -16.74303 -16.47374 -16.32790 -15.97356 -15.77863 -15.44691 -15.25514
-15.00482 -14.71981 -14.49866 -14.22415 -14.14802 -14.11212 -13.71684 -13.61991
-13.43473 -13.00502 -12.91426 -12.83871 -12.74216 -12.53483 -12.37899 -12.17989
-11.93683 -11.92696 -11.90221 -11.74854 -11.67582 -11.52938 -11.46785 -11.42419
-11.32719 -11.18428 -11.12999 -10.99400 -10.54639 -10.29644 -9.72722 -8.62111
-7.83448 -5.34241 1.48668 1.51316 1.60612 1.87212 2.44985 2.52849
3.31990 3.35622 3.66695 3.69698 3.79217 3.82567 3.89274 4.10572
4.16983 4.18367 4.22124 4.26479 4.37057 4.47774 4.54139 4.56002
4.61548 4.64861 4.66551 4.74800 4.81001 4.82606 4.84313 4.87687
4.92655 4.97105 4.98853 4.99193 5.05698 5.10341 5.13563 5.16658
5.21143 5.29272 5.34607 5.34945 5.43380 5.49390 5.49893 5.53294
5.62950 5.65380 5.77667 5.84202 6.43599 6.86782 6.92187 7.17040
7.48174 7.85837 8.40343 9.21811
Molecular weight = 338.24amu
Principal moments of inertia in cm(-1)
A = 0.012949 B = 0.002791 C = 0.002589
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2161.797882 B =10031.589143 C =10812.637564
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.932 5.932
2 C -0.045 4.045
3 Si 0.965 3.035
4 H -0.264 1.264
5 H -0.297 1.297
6 H -0.291 1.291
7 C -0.258 4.258
8 H 0.069 0.931
9 N -0.604 5.604
10 C 0.139 3.861
11 C -0.114 4.114
12 C -0.114 4.114
13 C 0.160 3.840
14 C 0.075 3.925
15 O -0.577 6.577
16 N -0.691 5.691
17 C 0.510 3.490
18 O -0.581 6.581
19 C -0.137 4.137
20 C -0.090 4.090
21 C -0.106 4.106
22 C -0.092 4.092
23 C -0.123 4.123
24 C -0.126 4.126
25 C -0.124 4.124
26 C -0.121 4.121
27 C 0.190 3.810
28 H 0.248 0.752
29 H 0.056 0.944
30 H 0.013 0.987
31 H 0.052 0.948
32 H 0.076 0.924
33 H 0.072 0.928
34 H 0.062 0.938
35 H 0.059 0.941
36 H 0.049 0.951
37 H 0.387 0.613
38 H 0.402 0.598
39 H 0.102 0.898
40 H 0.099 0.901
41 H 0.055 0.945
42 H 0.054 0.946
43 H 0.069 0.931
44 H 0.066 0.934
45 H 0.065 0.935
46 H 0.062 0.938
47 H 0.056 0.944
48 H 0.067 0.933
49 H 0.068 0.932
50 H 0.070 0.930
51 H 0.064 0.936
52 H 0.065 0.935
53 H 0.067 0.933
54 H 0.001 0.999
55 H 0.072 0.928
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 7.069 -9.425 17.440 21.046
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.577 5.577
2 C -0.241 4.241
3 Si 0.794 3.206
4 H -0.188 1.188
5 H -0.225 1.225
6 H -0.218 1.218
7 C -0.388 4.388
8 H 0.086 0.914
9 N -0.327 5.327
10 C 0.014 3.986
11 C -0.153 4.153
12 C -0.153 4.153
13 C 0.072 3.928
14 C -0.004 4.004
15 O -0.384 6.384
16 N -0.340 5.340
17 C 0.299 3.701
18 O -0.462 6.462
19 C -0.176 4.176
20 C -0.128 4.128
21 C -0.143 4.143
22 C -0.111 4.111
23 C -0.160 4.160
24 C -0.163 4.163
25 C -0.162 4.162
26 C -0.159 4.159
27 C 0.064 3.936
28 H 0.058 0.942
29 H 0.074 0.926
30 H 0.031 0.969
31 H 0.071 0.929
32 H 0.094 0.906
33 H 0.090 0.910
34 H 0.081 0.919
35 H 0.077 0.923
36 H 0.067 0.933
37 H 0.235 0.765
38 H 0.237 0.763
39 H 0.120 0.880
40 H 0.117 0.883
41 H 0.074 0.926
42 H 0.073 0.927
43 H 0.087 0.913
44 H 0.085 0.915
45 H 0.084 0.916
46 H 0.081 0.919
47 H 0.075 0.925
48 H 0.085 0.915
49 H 0.086 0.914
50 H 0.089 0.911
51 H 0.083 0.917
52 H 0.084 0.916
53 H 0.086 0.914
54 H 0.019 0.981
55 H 0.090 0.910
Dipole moment (debyes) X Y Z Total
from point charges 7.134 -9.836 17.222 21.077
hybrid contribution -0.536 1.211 -0.391 1.381
sum 6.598 -8.625 16.831 20.030
Atomic orbital electron populations
1.70139 1.06644 1.25630 1.55307 1.25849 0.96009 1.01345 1.00867
0.85241 0.78771 0.80093 0.76516 1.18785 1.22476 1.21829 1.19464
0.91323 0.84717 1.43267 0.91378 1.44228 1.31905 1.03824 1.52735
1.21093 0.97394 0.86546 0.93567 1.21776 0.96877 0.98959 0.97715
1.21699 0.98457 0.96084 0.99058 1.20978 0.85360 0.96201 0.90280
1.22469 0.96276 0.86758 0.94867 1.86522 1.50000 1.36853 1.64994
1.45875 1.33949 1.27544 1.26598 1.21132 0.83874 0.83708 0.81418
1.90543 1.56256 1.23930 1.75510 1.21716 0.98079 1.01456 0.96383
1.21214 0.99376 0.97321 0.94848 1.21692 0.98419 0.98568 0.95652
1.21773 0.95167 0.98806 0.95321 1.22462 0.97062 1.01353 0.95135
1.22516 0.97249 1.00112 0.96470 1.22363 0.96956 1.00013 0.96854
1.22226 0.97243 1.01581 0.94823 1.20675 0.87504 0.96944 0.88491
0.94237 0.92570 0.96889 0.92944 0.90588 0.90976 0.91942 0.92269
0.93298 0.76452 0.76347 0.87960 0.88282 0.92617 0.92696 0.91277
0.91516 0.91643 0.91920 0.92493 0.91459 0.91370 0.91120 0.91705
0.91633 0.91424 0.98105 0.90979
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.93 -53.80 11.04 21.65 0.24 -53.56 16
2 C -0.04 -2.41 5.03 84.86 0.43 -1.98 16
3 Si 0.97 43.48 29.57 68.60 2.03 45.51 16
4 H -0.26 -11.15 7.11 99.48 0.71 -10.44 16
5 H -0.30 -13.66 7.11 99.48 0.71 -12.96 16
6 H -0.29 -13.17 7.11 99.48 0.71 -12.46 16
7 C -0.26 -13.42 9.59 84.03 0.81 -12.62 16
8 H 0.07 3.46 7.85 -2.91 -0.02 3.44 16
9 N -0.60 -29.06 2.85 -699.09 -1.99 -31.05 16
10 C 0.14 5.69 6.52 86.37 0.56 6.26 16
11 C -0.11 -3.96 5.93 30.67 0.18 -3.78 16
12 C -0.11 -4.08 4.52 30.62 0.14 -3.94 16
13 C 0.16 6.18 0.45 3.68 0.00 6.18 16
14 C 0.08 2.68 5.59 71.98 0.40 3.08 16
15 O -0.58 -20.44 13.07 -148.98 -1.95 -22.38 16
16 N -0.69 -25.02 3.95 -422.57 -1.67 -26.69 16
17 C 0.51 16.77 7.24 87.65 0.63 17.40 16
18 O -0.58 -21.43 12.30 -3.02 -0.04 -21.46 16
19 C -0.14 -3.37 5.70 29.85 0.17 -3.20 16
20 C -0.09 -2.02 4.36 30.59 0.13 -1.89 16
21 C -0.11 -1.86 4.34 30.59 0.13 -1.72 16
22 C -0.09 -1.53 2.93 -10.07 -0.03 -1.55 16
23 C -0.12 -2.07 5.53 31.67 0.18 -1.89 16
24 C -0.13 -1.78 6.91 31.89 0.22 -1.56 16
25 C -0.12 -1.63 6.83 31.67 0.22 -1.41 16
26 C -0.12 -1.71 6.46 31.32 0.20 -1.51 16
27 C 0.19 9.02 3.82 86.36 0.33 9.35 16
28 H 0.25 14.03 8.31 -92.70 -0.77 13.26 16
29 H 0.06 2.23 7.93 -2.39 -0.02 2.21 16
30 H 0.01 0.55 8.14 -2.39 -0.02 0.53 16
31 H 0.05 1.88 7.53 -2.39 -0.02 1.86 16
32 H 0.08 2.25 8.14 -2.38 -0.02 2.23 16
33 H 0.07 2.60 6.27 -2.38 -0.01 2.59 16
34 H 0.06 2.16 8.14 -2.39 -0.02 2.14 16
35 H 0.06 2.10 6.30 -2.39 -0.02 2.09 16
36 H 0.05 1.65 8.14 -2.39 -0.02 1.63 16
37 H 0.39 9.69 9.12 -74.06 -0.68 9.02 16
38 H 0.40 15.39 8.43 -92.71 -0.78 14.61 16
39 H 0.10 2.24 8.14 -2.38 -0.02 2.22 16
40 H 0.10 2.27 8.14 -2.39 -0.02 2.25 16
41 H 0.06 1.39 7.47 -2.38 -0.02 1.38 16
42 H 0.05 1.36 8.10 -2.39 -0.02 1.34 16
43 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16
44 H 0.07 1.13 8.00 -2.39 -0.02 1.11 16
45 H 0.07 1.15 8.14 -2.38 -0.02 1.13 16
46 H 0.06 1.11 7.76 -2.39 -0.02 1.09 16
47 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16
48 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16
49 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16
50 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16
51 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16
52 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16
53 H 0.07 0.92 7.67 -2.39 -0.02 0.90 16
54 H 0.00 0.05 8.14 -2.39 -0.02 0.03 16
55 H 0.07 3.93 5.91 -2.39 -0.01 3.91 16
Total: -1.00 -63.75 414.63 0.73 -63.02
By element:
Atomic # 1 Polarization: 42.01 SS G_CDS: -0.60 Total: 41.41 kcal
Atomic # 6 Polarization: 0.51 SS G_CDS: 4.70 Total: 5.21 kcal
Atomic # 7 Polarization: -107.88 SS G_CDS: -3.42 Total: -111.31 kcal
Atomic # 8 Polarization: -41.86 SS G_CDS: -1.98 Total: -43.85 kcal
Atomic # 14 Polarization: 43.48 SS G_CDS: 2.03 Total: 45.51 kcal
Total: -63.75 0.73 -63.02 kcal
The number of atoms in the molecule is 55
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001754861377.mol2 55
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -55.684 kcal
(2) G-P(sol) polarization free energy of solvation -63.749 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.433 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.729 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.020 kcal
(6) G-S(sol) free energy of system = (1) + (5) -118.704 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.40 seconds