Wall clock time and date at job start Tue Mar 31 2020 21:49:55
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31613 * 1
3 3 Si 1.86803 * 120.00053 * 2 1
4 4 H 1.48497 * 109.47379 * 271.23063 * 3 2 1
5 5 H 1.48502 * 109.46945 * 31.22683 * 3 2 1
6 6 H 1.48496 * 109.47039 * 151.22459 * 3 2 1
7 7 C 1.38807 * 120.00111 * 180.02562 * 2 1 3
8 8 H 1.07995 * 120.00347 * 3.39819 * 7 2 1
9 9 N 1.36946 * 120.00284 * 183.39233 * 7 2 1
10 10 C 1.46495 * 120.00140 * 184.84631 * 9 7 2
11 11 C 1.53001 * 109.46988 * 184.09763 * 10 9 7
12 12 N 1.46503 * 109.53984 * 57.33869 * 11 10 9
13 13 C 1.34777 * 120.00128 * 55.85977 * 12 11 10
14 14 O 1.21281 * 120.00044 * 4.51718 * 13 12 11
15 15 C 1.50702 * 119.99990 * 184.52476 * 13 12 11
16 16 C 1.53002 * 109.47005 * 174.14814 * 15 13 12
17 17 C 1.52997 * 109.47041 * 183.63137 * 16 15 13
18 18 C 1.53007 * 109.46863 * 295.00195 * 17 16 15
19 19 C 1.53007 * 109.46827 * 180.02562 * 18 17 16
20 20 C 1.52998 * 109.47198 * 59.99610 * 19 18 17
21 21 C 1.52997 * 109.47475 * 299.99981 * 20 19 18
22 22 C 1.52993 * 109.47184 * 175.00183 * 17 16 15
23 23 C 1.53177 * 109.54239 * 177.51459 * 11 10 9
24 24 C 1.53282 * 109.06028 * 176.85745 * 23 11 10
25 25 O 1.42897 * 109.46186 * 302.44082 * 24 23 11
26 26 C 1.42904 * 114.09862 * 61.16131 * 25 24 23
27 27 C 1.53091 * 109.41353 * 298.84721 * 26 25 24
28 28 H 0.96998 * 120.00231 * 359.97438 * 1 2 3
29 29 H 0.96998 * 119.99140 * 4.85595 * 9 7 2
30 30 H 1.09004 * 109.46972 * 64.10263 * 10 9 7
31 31 H 1.08997 * 109.47659 * 304.10032 * 10 9 7
32 32 H 0.97007 * 119.99739 * 235.85566 * 12 11 10
33 33 H 1.09003 * 109.46792 * 294.14742 * 15 13 12
34 34 H 1.08995 * 109.47182 * 54.14712 * 15 13 12
35 35 H 1.08994 * 109.46873 * 303.62754 * 16 15 13
36 36 H 1.08998 * 109.46921 * 63.63324 * 16 15 13
37 37 H 1.08998 * 109.47105 * 54.99559 * 17 16 15
38 38 H 1.08998 * 109.46741 * 299.99587 * 18 17 16
39 39 H 1.08993 * 109.47534 * 59.99995 * 18 17 16
40 40 H 1.09001 * 109.46849 * 299.99783 * 19 18 17
41 41 H 1.08994 * 109.46862 * 179.97438 * 19 18 17
42 42 H 1.08995 * 109.47227 * 179.97438 * 20 19 18
43 43 H 1.09001 * 109.47079 * 60.00314 * 20 19 18
44 44 H 1.09001 * 109.47239 * 300.00234 * 21 20 19
45 45 H 1.08993 * 109.47459 * 179.97438 * 21 20 19
46 46 H 1.09004 * 109.47025 * 299.99591 * 22 17 16
47 47 H 1.08998 * 109.47609 * 59.99685 * 22 17 16
48 48 H 1.09004 * 109.52179 * 296.84255 * 23 11 10
49 49 H 1.08995 * 109.52544 * 57.03129 * 23 11 10
50 50 H 1.09010 * 109.45469 * 182.44939 * 24 23 11
51 51 H 1.08996 * 109.47012 * 62.44792 * 24 23 11
52 52 H 1.09001 * 109.48710 * 178.85877 * 26 25 24
53 53 H 1.09004 * 109.48712 * 58.82965 * 26 25 24
54 54 H 1.09007 * 109.51889 * 297.69414 * 27 26 25
55 55 H 1.09003 * 109.57684 * 177.54385 * 27 26 25
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3161 0.0000 0.0000
3 14 2.2502 1.6178 0.0000
4 1 2.4717 2.0615 -1.3997
5 1 1.4608 2.6450 0.7259
6 1 3.5604 1.4328 0.6739
7 6 2.0102 -1.2021 -0.0005
8 1 1.4717 -2.1366 -0.0564
9 7 3.3778 -1.2032 0.0696
10 6 4.1158 -2.4641 -0.0378
11 6 5.6082 -2.2012 0.1731
12 7 5.8142 -1.5652 1.4768
13 6 5.3592 -2.1611 2.5967
14 8 4.8523 -3.2612 2.5352
15 6 5.4800 -1.4604 3.9254
16 6 4.7631 -2.2792 5.0009
17 6 4.8077 -1.5243 6.3309
18 6 6.2579 -1.4134 6.8060
19 6 6.3024 -0.6590 8.1364
20 6 5.4802 -1.4172 9.1804
21 6 4.0301 -1.5281 8.7053
22 6 3.9854 -2.2820 7.3752
23 6 6.3742 -3.5267 0.1228
24 6 7.8746 -3.2432 0.2565
25 8 8.2862 -2.3561 -0.7854
26 6 7.6360 -1.0838 -0.7593
27 6 6.1278 -1.2794 -0.9344
28 1 -0.4850 0.8400 0.0004
29 1 3.8578 -0.3690 0.1906
30 1 3.9589 -2.8938 -1.0272
31 1 3.7587 -3.1600 0.7213
32 1 6.2783 -0.7153 1.5338
33 1 6.5330 -1.3585 4.1880
34 1 5.0252 -0.4722 3.8577
35 1 3.7254 -2.4359 4.7067
36 1 5.2585 -3.2436 5.1137
37 1 4.3923 -0.5257 6.1959
38 1 6.6733 -2.4121 6.9410
39 1 6.8438 -0.8737 6.0621
40 1 5.8868 0.3396 8.0019
41 1 7.3354 -0.5805 8.4751
42 1 5.5122 -0.8801 10.1282
43 1 5.8958 -2.4159 9.3149
44 1 3.6144 -0.5295 8.5707
45 1 3.4444 -2.0686 9.4488
46 1 2.9523 -2.3609 7.0367
47 1 4.4008 -3.2806 7.5101
48 1 6.0480 -4.1672 0.9422
49 1 6.1809 -4.0233 -0.8280
50 1 8.4292 -4.1783 0.1778
51 1 8.0726 -2.7834 1.2247
52 1 8.0186 -0.4632 -1.5696
53 1 7.8307 -0.5955 0.1956
54 1 5.9295 -1.7306 -1.9067
55 1 5.6245 -0.3146 -0.8713
RHF calculation, no. of doubly occupied orbitals= 66
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001755099395.mol2 55
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 21:49:55
Heat of formation + Delta-G solvation = -125.961820 kcal
Electronic energy + Delta-G solvation = -31619.656751 eV
Core-core repulsion = 27654.376951 eV
Total energy + Delta-G solvation = -3965.279800 eV
No. of doubly occupied orbitals = 66
Molecular weight
(most abundant/longest-lived isotopes) = 338.236 amu
Computer time = 1.07 seconds
Orbital eigenvalues (eV)
-41.78945 -39.98067 -39.24353 -37.36671 -35.52991 -34.78085 -33.43326 -32.54958
-32.09367 -31.62065 -30.11143 -28.49473 -25.67223 -25.11689 -24.55073 -23.46959
-23.01239 -22.21913 -21.16539 -20.60919 -20.44210 -19.74978 -18.26331 -17.23604
-17.00404 -16.77469 -16.61478 -16.47704 -16.22699 -15.69913 -15.34800 -15.32747
-15.22358 -14.89041 -14.83158 -14.76489 -14.44701 -14.26858 -13.91493 -13.71050
-13.46079 -13.39262 -13.13799 -12.96461 -12.86891 -12.83482 -12.68317 -12.48807
-12.31408 -12.14173 -12.04426 -11.95963 -11.88063 -11.70570 -11.65709 -11.39402
-11.28945 -11.06541 -10.91413 -10.78330 -10.64419 -10.44018 -9.90568 -9.28559
-8.04792 -5.38689 1.29485 1.39301 1.45744 1.77735 2.26139 2.45566
2.95732 3.25583 3.44873 3.63298 3.73961 3.77847 3.81535 3.84039
3.92728 4.02740 4.09084 4.14977 4.23078 4.26147 4.41214 4.43458
4.49124 4.56095 4.59921 4.65772 4.68358 4.70411 4.72016 4.78384
4.80675 4.83417 4.83974 4.85331 5.00131 5.07064 5.09593 5.11528
5.13010 5.17356 5.19622 5.25429 5.29615 5.37379 5.38917 5.44278
5.53609 5.63578 5.65887 5.73033 6.17619 6.24789 6.66735 7.05326
7.41236 7.78257 8.04022 9.17553
Molecular weight = 338.24amu
Principal moments of inertia in cm(-1)
A = 0.008198 B = 0.003946 C = 0.002993
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 3414.667940 B = 7093.879090 C = 9353.493914
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.987 5.987
2 C -0.065 4.065
3 Si 0.963 3.037
4 H -0.276 1.276
5 H -0.296 1.296
6 H -0.243 1.243
7 C -0.236 4.236
8 H 0.039 0.961
9 N -0.741 5.741
10 C 0.146 3.854
11 C 0.179 3.821
12 N -0.713 5.713
13 C 0.512 3.488
14 O -0.571 6.571
15 C -0.134 4.134
16 C -0.092 4.092
17 C -0.082 4.082
18 C -0.112 4.112
19 C -0.119 4.119
20 C -0.118 4.118
21 C -0.118 4.118
22 C -0.117 4.117
23 C -0.157 4.157
24 C 0.074 3.926
25 O -0.393 6.393
26 C 0.065 3.935
27 C -0.154 4.154
28 H 0.258 0.742
29 H 0.368 0.632
30 H 0.019 0.981
31 H 0.026 0.974
32 H 0.409 0.591
33 H 0.126 0.874
34 H 0.096 0.904
35 H 0.034 0.966
36 H 0.062 0.938
37 H 0.066 0.934
38 H 0.061 0.939
39 H 0.074 0.926
40 H 0.060 0.940
41 H 0.071 0.929
42 H 0.067 0.933
43 H 0.061 0.939
44 H 0.058 0.942
45 H 0.063 0.937
46 H 0.046 0.954
47 H 0.060 0.940
48 H 0.076 0.924
49 H 0.074 0.926
50 H 0.106 0.894
51 H 0.058 0.942
52 H 0.115 0.885
53 H 0.068 0.932
54 H 0.082 0.918
55 H 0.078 0.922
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 22.841 0.550 13.205 26.389
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.637 5.637
2 C -0.256 4.256
3 Si 0.789 3.211
4 H -0.202 1.202
5 H -0.222 1.222
6 H -0.167 1.167
7 C -0.367 4.367
8 H 0.058 0.942
9 N -0.388 5.388
10 C 0.019 3.981
11 C 0.092 3.908
12 N -0.366 5.366
13 C 0.300 3.700
14 O -0.450 6.450
15 C -0.173 4.173
16 C -0.130 4.130
17 C -0.100 4.100
18 C -0.149 4.149
19 C -0.156 4.156
20 C -0.156 4.156
21 C -0.156 4.156
22 C -0.154 4.154
23 C -0.196 4.196
24 C -0.003 4.003
25 O -0.312 6.312
26 C -0.012 4.012
27 C -0.192 4.192
28 H 0.067 0.933
29 H 0.203 0.797
30 H 0.036 0.964
31 H 0.044 0.956
32 H 0.246 0.754
33 H 0.144 0.856
34 H 0.114 0.886
35 H 0.053 0.947
36 H 0.081 0.919
37 H 0.085 0.915
38 H 0.080 0.920
39 H 0.093 0.907
40 H 0.079 0.921
41 H 0.090 0.910
42 H 0.086 0.914
43 H 0.080 0.920
44 H 0.077 0.923
45 H 0.082 0.918
46 H 0.065 0.935
47 H 0.079 0.921
48 H 0.094 0.906
49 H 0.093 0.907
50 H 0.124 0.876
51 H 0.076 0.924
52 H 0.133 0.867
53 H 0.086 0.914
54 H 0.101 0.899
55 H 0.096 0.904
Dipole moment (debyes) X Y Z Total
from point charges 22.412 -0.383 12.990 25.907
hybrid contribution -1.049 0.990 -0.107 1.447
sum 21.362 0.608 12.883 24.954
Atomic orbital electron populations
1.69918 1.07458 1.26792 1.59526 1.25593 0.96167 1.01535 1.02274
0.85310 0.78777 0.78768 0.78262 1.20173 1.22227 1.16740 1.18949
0.83111 0.93069 1.41576 0.94249 1.42415 1.02229 1.04764 1.89368
1.21086 0.90902 0.88436 0.97674 1.20399 0.93110 0.93879 0.83409
1.45963 1.59732 1.25563 1.05368 1.21201 0.76177 0.85760 0.86820
1.90633 1.44659 1.22340 1.87349 1.21758 1.04841 1.00261 0.90446
1.21266 0.99403 0.98648 0.93658 1.21139 0.96978 0.98851 0.93059
1.21625 0.94970 1.00946 0.97349 1.21542 1.00336 0.98942 0.94807
1.21537 0.94741 1.00765 0.98546 1.21518 0.97487 1.00298 0.96299
1.21565 0.99253 0.99279 0.95349 1.22493 0.96858 0.96728 1.03485
1.22543 0.92649 0.94508 0.90600 1.87911 1.64570 1.26092 1.52583
1.22704 0.89681 0.85337 1.03455 1.22444 0.98096 1.00314 0.98382
0.93305 0.79708 0.96361 0.95587 0.75414 0.85606 0.88557 0.94721
0.91942 0.91512 0.91987 0.90704 0.92128 0.90990 0.91408 0.92022
0.92322 0.91846 0.93528 0.92085 0.90551 0.90731 0.87627 0.92395
0.86667 0.91412 0.89920 0.90357
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 17.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.99 -64.81 13.97 21.65 0.30 -64.51 16
2 C -0.06 -3.88 5.50 84.86 0.47 -3.41 16
3 Si 0.96 44.70 27.90 68.60 1.91 46.61 16
4 H -0.28 -12.42 7.11 99.48 0.71 -11.72 16
5 H -0.30 -13.92 7.11 99.48 0.71 -13.21 16
6 H -0.24 -9.59 6.30 99.48 0.63 -8.97 16
7 C -0.24 -14.12 10.47 84.03 0.88 -13.24 16
8 H 0.04 2.68 8.06 -2.91 -0.02 2.65 16
9 N -0.74 -35.35 5.00 -343.46 -1.72 -37.07 16
10 C 0.15 6.14 4.86 86.38 0.42 6.56 16
11 C 0.18 5.29 0.32 3.72 0.00 5.29 16
12 N -0.71 -18.51 3.88 -422.38 -1.64 -20.15 16
13 C 0.51 15.30 7.23 87.66 0.63 15.93 16
14 O -0.57 -22.15 12.26 -3.03 -0.04 -22.18 16
15 C -0.13 -2.93 5.37 29.85 0.16 -2.77 16
16 C -0.09 -2.27 3.98 30.59 0.12 -2.15 16
17 C -0.08 -1.60 2.19 -10.79 -0.02 -1.62 16
18 C -0.11 -1.64 4.96 30.60 0.15 -1.49 16
19 C -0.12 -1.56 5.92 30.60 0.18 -1.38 16
20 C -0.12 -1.63 5.92 30.59 0.18 -1.45 16
21 C -0.12 -1.97 5.92 30.58 0.18 -1.79 16
22 C -0.12 -2.35 5.20 30.58 0.16 -2.19 16
23 C -0.16 -4.22 4.83 30.75 0.15 -4.08 16
24 C 0.07 1.54 6.68 72.08 0.48 2.02 16
25 O -0.39 -8.62 10.77 -148.98 -1.60 -10.23 16
26 C 0.06 1.19 6.67 72.01 0.48 1.67 16
27 C -0.15 -3.83 4.79 30.68 0.15 -3.68 16
28 H 0.26 16.03 8.31 -92.71 -0.77 15.26 16
29 H 0.37 15.94 4.21 -92.71 -0.39 15.55 16
30 H 0.02 0.80 8.14 -2.39 -0.02 0.78 16
31 H 0.03 1.27 6.12 -2.39 -0.01 1.26 16
32 H 0.41 7.86 7.40 -92.70 -0.69 7.17 16
33 H 0.13 1.82 6.74 -2.39 -0.02 1.80 16
34 H 0.10 2.05 8.14 -2.39 -0.02 2.03 16
35 H 0.03 1.11 8.08 -2.39 -0.02 1.09 16
36 H 0.06 1.59 8.12 -2.39 -0.02 1.57 16
37 H 0.07 1.36 8.14 -2.39 -0.02 1.35 16
38 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16
39 H 0.07 0.92 6.65 -2.39 -0.02 0.90 16
40 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16
41 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16
42 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16
43 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16
44 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16
45 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16
46 H 0.05 1.07 8.14 -2.38 -0.02 1.05 16
47 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16
48 H 0.08 2.38 6.29 -2.39 -0.01 2.37 16
49 H 0.07 2.03 8.14 -2.39 -0.02 2.01 16
50 H 0.11 1.90 8.14 -2.38 -0.02 1.88 16
51 H 0.06 1.10 7.75 -2.39 -0.02 1.09 16
52 H 0.12 1.70 8.14 -2.39 -0.02 1.68 16
53 H 0.07 0.98 7.01 -2.38 -0.02 0.96 16
54 H 0.08 2.18 8.14 -2.38 -0.02 2.16 16
55 H 0.08 2.02 7.05 -2.39 -0.02 2.01 16
Total: -1.00 -77.03 407.18 1.70 -75.34
By element:
Atomic # 1 Polarization: 40.26 SS G_CDS: -0.29 Total: 39.97 kcal
Atomic # 6 Polarization: -12.55 SS G_CDS: 4.77 Total: -7.77 kcal
Atomic # 7 Polarization: -118.67 SS G_CDS: -3.05 Total: -121.73 kcal
Atomic # 8 Polarization: -30.77 SS G_CDS: -1.64 Total: -32.41 kcal
Atomic # 14 Polarization: 44.70 SS G_CDS: 1.91 Total: 46.61 kcal
Total: -77.03 1.70 -75.34 kcal
The number of atoms in the molecule is 55
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001755099395.mol2 55
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -50.627 kcal
(2) G-P(sol) polarization free energy of solvation -77.031 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.657 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.696 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.335 kcal
(6) G-S(sol) free energy of system = (1) + (5) -125.962 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.07 seconds