Wall clock time and date at job start Tue Mar 31 2020 21:03:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.34776 * 120.00261 * 2 1 4 4 O 1.21586 * 119.99697 * 0.02562 * 3 2 1 5 5 N 1.34774 * 119.99919 * 180.02562 * 3 2 1 6 6 C 1.46503 * 119.99473 * 180.02562 * 5 3 2 7 7 C 1.50703 * 109.46635 * 179.97438 * 6 5 3 8 8 O 1.21276 * 120.00313 * 359.97438 * 7 6 5 9 9 N 1.34787 * 119.99759 * 179.97438 * 7 6 5 10 10 C 1.46924 * 120.63033 * 359.72119 * 9 7 6 11 11 C 1.53187 * 108.77642 * 126.66473 * 10 9 7 12 12 C 1.53041 * 109.31211 * 54.63373 * 11 10 9 13 13 C 1.53038 * 109.53768 * 298.63806 * 12 11 10 14 14 H 1.08999 * 109.49677 * 301.40907 * 13 12 11 15 15 C 1.53000 * 109.52227 * 181.33180 * 13 12 11 16 16 H 1.09001 * 110.64104 * 300.84356 * 15 13 12 17 17 C 1.55155 * 110.71945 * 177.70180 * 15 13 12 18 18 C 1.54914 * 101.58428 * 206.13241 * 17 15 13 19 19 N 1.47430 * 104.82983 * 37.00942 * 18 17 15 20 20 C 1.36938 * 125.65167 * 155.90634 * 19 18 17 21 21 H 1.07995 * 120.00048 * 179.97438 * 20 19 18 22 22 C 1.38819 * 119.99620 * 359.97438 * 20 19 18 23 23 N 1.31623 * 119.99928 * 359.97438 * 22 20 19 24 24 Si 1.86790 * 119.99903 * 179.97438 * 22 20 19 25 25 H 1.48508 * 109.47352 * 359.97438 * 24 22 20 26 26 H 1.48502 * 109.47506 * 119.99940 * 24 22 20 27 27 H 1.48498 * 109.47182 * 239.99956 * 24 22 20 28 28 C 1.47325 * 108.73549 * 335.71900 * 19 18 17 29 29 C 1.46926 * 120.62918 * 180.02562 * 9 7 6 30 30 H 1.08995 * 109.47200 * 299.99665 * 1 2 3 31 31 H 1.09003 * 109.47228 * 59.99795 * 1 2 3 32 32 H 1.09002 * 109.46946 * 179.97438 * 1 2 3 33 33 H 0.97002 * 119.99606 * 180.02562 * 2 1 3 34 34 H 0.96994 * 120.00328 * 359.97438 * 5 3 2 35 35 H 1.08998 * 109.47220 * 60.00105 * 6 5 3 36 36 H 1.09001 * 109.47400 * 299.99959 * 6 5 3 37 37 H 1.09003 * 109.58516 * 246.45674 * 10 9 7 38 38 H 1.09002 * 109.58479 * 6.87832 * 10 9 7 39 39 H 1.08999 * 109.49975 * 294.68379 * 11 10 9 40 40 H 1.09004 * 109.52338 * 174.59879 * 11 10 9 41 41 H 1.09003 * 109.46022 * 178.61192 * 12 11 10 42 42 H 1.09007 * 109.45589 * 58.65622 * 12 11 10 43 43 H 1.09003 * 111.00529 * 324.20582 * 17 15 13 44 44 H 1.08997 * 111.00634 * 88.05985 * 17 15 13 45 45 H 1.08995 * 110.36756 * 155.84338 * 18 17 15 46 46 H 1.08998 * 110.37143 * 278.17536 * 18 17 15 47 47 H 0.96999 * 119.99352 * 180.02562 * 23 22 20 48 48 H 1.09007 * 110.05773 * 241.87338 * 28 19 18 49 49 H 1.08993 * 109.85107 * 120.61238 * 28 19 18 50 50 H 1.09002 * 109.58798 * 353.11768 * 29 9 7 51 51 H 1.08996 * 109.58371 * 113.54749 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 1.5310 2.2201 0.0005 5 7 3.4867 1.1671 -0.0005 6 6 4.2191 2.4359 0.0000 7 6 5.7008 2.1604 -0.0001 8 8 6.1050 1.0170 -0.0001 9 7 6.5767 3.1849 -0.0001 10 6 6.1022 4.5754 -0.0062 11 6 6.7584 5.3254 1.1572 12 6 8.2788 5.1796 1.0601 13 6 8.6587 3.7007 1.1631 14 1 8.2948 3.2965 2.1077 15 6 10.1807 3.5582 1.0993 16 1 10.5664 3.9695 0.1664 17 6 10.6001 2.0730 1.2593 18 6 12.0294 2.2142 1.8400 19 7 11.9562 3.3765 2.7440 20 6 12.7868 3.6149 3.8063 21 1 12.6506 4.4997 4.4103 22 6 13.8039 2.7192 4.1068 23 7 13.9695 1.6405 3.3709 24 14 14.9374 3.0447 5.5553 25 1 14.5441 4.3153 6.2159 26 1 14.8314 1.9273 6.5277 27 1 16.3381 3.1506 5.0738 28 6 10.8445 4.2419 2.3132 29 6 8.0241 2.9323 -0.0008 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5139 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 1.9499 -0.8401 -0.0004 34 1 3.9716 0.3271 -0.0005 35 1 3.9562 3.0068 0.8905 36 1 3.9555 3.0081 -0.8894 37 1 6.3759 5.0507 -0.9482 38 1 5.0188 4.5923 0.1128 39 1 6.4124 4.9060 2.1018 40 1 6.4903 6.3808 1.1077 41 1 8.7493 5.7329 1.8728 42 1 8.6213 5.5768 0.1045 43 1 9.9438 1.5548 1.9585 44 1 10.6188 1.5661 0.2945 45 1 12.3031 1.3177 2.3962 46 1 12.7470 2.3999 1.0409 47 1 14.6800 1.0145 3.5811 48 1 11.2240 5.2222 2.0248 49 1 10.1211 4.3452 3.1218 50 1 8.2088 1.8651 0.1218 51 1 8.4541 3.2739 -0.9423 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755205554.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:03:23 Heat of formation + Delta-G solvation = -41.376930 kcal Electronic energy + Delta-G solvation = -29880.349125 eV Core-core repulsion = 25815.196858 eV Total energy + Delta-G solvation = -4065.152267 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -40.79661 -39.96392 -38.40709 -36.76130 -35.06541 -34.64931 -33.73665 -32.37964 -31.22411 -29.22606 -28.79627 -27.22432 -26.20298 -25.25214 -24.20524 -22.84600 -21.35903 -21.02068 -19.96910 -19.58443 -19.39192 -18.81127 -17.07581 -16.98699 -16.77277 -16.36039 -15.80702 -15.54243 -15.05697 -14.68299 -14.57395 -14.47377 -14.38267 -13.94062 -13.89776 -13.73498 -13.25337 -13.18373 -13.10036 -12.60980 -12.58758 -12.43017 -12.16473 -11.81905 -11.56676 -11.32642 -11.07347 -11.03770 -10.91298 -10.83821 -10.63347 -10.59813 -10.17883 -10.06839 -9.97261 -9.81388 -9.70934 -9.68903 -9.39613 -9.24857 -8.80846 -8.61917 -6.78912 -5.62032 -3.03410 2.18874 2.29283 2.83530 2.87045 3.40851 3.46063 3.48746 3.93850 4.08405 4.50592 4.54656 4.74532 4.80066 4.81268 4.92336 4.98082 5.00217 5.13171 5.16518 5.20726 5.39718 5.41555 5.48512 5.53035 5.59472 5.62429 5.70777 5.77058 5.92784 5.95125 5.99731 6.04098 6.05140 6.05578 6.24809 6.28910 6.42754 6.45427 6.53230 6.64536 6.67747 6.80979 7.01502 7.11790 7.57151 7.63325 7.66671 7.83361 7.90447 8.23512 8.40739 9.25778 9.86862 10.52535 11.41747 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.019876 B = 0.002069 C = 0.001977 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1408.413865 B =13533.028456 C =14157.672258 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.107 3.893 2 N -0.750 5.750 3 C 0.706 3.294 4 O -0.593 6.593 5 N -0.735 5.735 6 C 0.122 3.878 7 C 0.509 3.491 8 O -0.538 6.538 9 N -0.604 5.604 10 C 0.102 3.898 11 C -0.135 4.135 12 C -0.117 4.117 13 C -0.087 4.087 14 H 0.075 0.925 15 C -0.092 4.092 16 H 0.070 0.930 17 C -0.140 4.140 18 C 0.152 3.848 19 N -0.606 5.606 20 C -0.220 4.220 21 H 0.077 0.923 22 C -0.014 4.014 23 N -0.922 5.922 24 Si 0.913 3.087 25 H -0.280 1.280 26 H -0.291 1.291 27 H -0.291 1.291 28 C 0.144 3.856 29 C 0.117 3.883 30 H 0.058 0.942 31 H 0.058 0.942 32 H 0.076 0.924 33 H 0.400 0.600 34 H 0.409 0.591 35 H 0.098 0.902 36 H 0.097 0.903 37 H 0.074 0.926 38 H 0.085 0.915 39 H 0.068 0.932 40 H 0.076 0.924 41 H 0.073 0.927 42 H 0.064 0.936 43 H 0.059 0.941 44 H 0.056 0.944 45 H 0.105 0.895 46 H 0.010 0.990 47 H 0.251 0.749 48 H 0.018 0.982 49 H 0.022 0.978 50 H 0.097 0.903 51 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.066 1.036 -10.193 26.157 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.037 4.037 2 N -0.405 5.405 3 C 0.406 3.594 4 O -0.471 6.471 5 N -0.394 5.394 6 C -0.007 4.007 7 C 0.296 3.704 8 O -0.415 6.415 9 N -0.337 5.337 10 C -0.021 4.021 11 C -0.173 4.173 12 C -0.155 4.155 13 C -0.106 4.106 14 H 0.093 0.907 15 C -0.112 4.112 16 H 0.089 0.911 17 C -0.179 4.179 18 C 0.027 3.973 19 N -0.332 5.332 20 C -0.349 4.349 21 H 0.095 0.905 22 C -0.209 4.209 23 N -0.571 5.571 24 Si 0.744 3.256 25 H -0.206 1.206 26 H -0.218 1.218 27 H -0.218 1.218 28 C 0.018 3.982 29 C -0.004 4.004 30 H 0.077 0.923 31 H 0.077 0.923 32 H 0.094 0.906 33 H 0.233 0.767 34 H 0.246 0.754 35 H 0.116 0.884 36 H 0.115 0.885 37 H 0.092 0.908 38 H 0.103 0.897 39 H 0.087 0.913 40 H 0.095 0.905 41 H 0.091 0.909 42 H 0.082 0.918 43 H 0.078 0.922 44 H 0.075 0.925 45 H 0.122 0.878 46 H 0.028 0.972 47 H 0.061 0.939 48 H 0.036 0.964 49 H 0.040 0.960 50 H 0.115 0.885 51 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -24.243 1.327 -10.082 26.289 hybrid contribution 1.131 -0.446 0.706 1.406 sum -23.112 0.881 -9.376 24.957 Atomic orbital electron populations 1.21407 0.77909 1.02080 1.02327 1.44880 1.07847 1.07174 1.80638 1.15825 0.81335 0.84434 0.77834 1.90933 1.67936 1.30259 1.58008 1.44758 1.04690 1.09720 1.80204 1.20921 0.88361 0.86764 1.04604 1.20452 0.88284 0.85210 0.76421 1.90704 1.79608 1.20955 1.50253 1.48075 1.07146 1.06040 1.72431 1.21877 0.99328 0.81146 0.99708 1.21932 0.96648 1.00361 0.98401 1.21622 0.94530 0.96608 1.02723 1.21513 0.95585 0.95034 0.98485 0.90680 1.22132 0.92124 0.97867 0.99060 0.91149 1.23064 1.00775 0.94227 0.99801 1.21912 0.89492 0.93803 0.92101 1.44608 1.33682 1.22609 1.32285 1.19128 1.06962 1.05418 1.03355 0.90541 1.24796 0.99275 0.97330 0.99506 1.69827 1.34051 1.13005 1.40203 0.86009 0.80500 0.77302 0.81762 1.20575 1.21784 1.21806 1.21327 0.90308 0.93325 0.93192 1.21795 0.77451 1.02566 0.98622 0.92292 0.92332 0.90567 0.76686 0.75410 0.88446 0.88525 0.90763 0.89717 0.91342 0.90509 0.90878 0.91759 0.92220 0.92530 0.87755 0.97217 0.93851 0.96376 0.96007 0.88484 0.91318 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 0.61 10.70 59.85 0.64 1.25 16 2 N -0.75 -5.37 5.72 -72.07 -0.41 -5.78 16 3 C 0.71 7.46 8.57 -86.92 -0.74 6.71 16 4 O -0.59 -8.34 16.34 5.29 0.09 -8.26 16 5 N -0.73 -7.00 5.53 -66.41 -0.37 -7.37 16 6 C 0.12 1.12 4.50 -5.19 -0.02 1.10 16 7 C 0.51 5.75 7.77 -10.98 -0.09 5.67 16 8 O -0.54 -7.80 15.08 5.56 0.08 -7.71 16 9 N -0.60 -6.28 2.97 -172.75 -0.51 -6.79 16 10 C 0.10 0.77 6.34 -3.71 -0.02 0.74 16 11 C -0.14 -1.12 6.08 -26.61 -0.16 -1.28 16 12 C -0.12 -1.25 5.01 -26.69 -0.13 -1.39 16 13 C -0.09 -1.14 1.72 -90.48 -0.16 -1.29 16 14 H 0.07 1.12 8.12 -51.93 -0.42 0.70 16 15 C -0.09 -1.53 2.49 -88.78 -0.22 -1.75 16 16 H 0.07 1.12 8.14 -51.93 -0.42 0.69 16 17 C -0.14 -2.66 5.61 -24.58 -0.14 -2.79 16 18 C 0.15 3.74 5.89 -2.52 -0.01 3.72 16 19 N -0.61 -15.69 3.40 -169.82 -0.58 -16.27 16 20 C -0.22 -6.22 10.28 -15.06 -0.15 -6.38 16 21 H 0.08 2.09 7.83 -52.49 -0.41 1.68 16 22 C -0.01 -0.40 5.49 -17.43 -0.10 -0.49 16 23 N -0.92 -27.29 10.09 55.49 0.56 -26.73 16 24 Si 0.91 22.33 29.55 -169.99 -5.02 17.31 16 25 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 26 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 27 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 28 C 0.14 2.96 5.91 -2.90 -0.02 2.95 16 29 C 0.12 1.43 5.42 -3.69 -0.02 1.41 16 30 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 31 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 32 H 0.08 0.20 8.14 -51.93 -0.42 -0.22 16 33 H 0.40 1.82 8.84 -40.82 -0.36 1.46 16 34 H 0.41 3.65 7.45 -40.82 -0.30 3.35 16 35 H 0.10 0.85 7.70 -51.93 -0.40 0.45 16 36 H 0.10 0.79 7.94 -51.93 -0.41 0.38 16 37 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 38 H 0.08 0.49 5.94 -51.93 -0.31 0.18 16 39 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 40 H 0.08 0.51 8.14 -51.93 -0.42 0.08 16 41 H 0.07 0.85 7.29 -51.93 -0.38 0.48 16 42 H 0.06 0.64 8.14 -51.92 -0.42 0.22 16 43 H 0.06 1.16 8.05 -51.93 -0.42 0.74 16 44 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 45 H 0.10 2.91 5.87 -51.93 -0.31 2.60 16 46 H 0.01 0.26 8.14 -51.93 -0.42 -0.17 16 47 H 0.25 7.18 8.31 -40.82 -0.34 6.84 16 48 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 49 H 0.02 0.45 7.68 -51.93 -0.40 0.05 16 50 H 0.10 1.39 6.43 -51.93 -0.33 1.05 16 51 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 LS Contribution 396.92 15.07 5.98 5.98 Total: -1.00 -35.38 396.92 -10.19 -45.57 By element: Atomic # 1 Polarization: 10.52 SS G_CDS: -8.66 Total: 1.86 kcal Atomic # 6 Polarization: 9.53 SS G_CDS: -1.35 Total: 8.18 kcal Atomic # 7 Polarization: -61.63 SS G_CDS: -1.31 Total: -62.94 kcal Atomic # 8 Polarization: -16.14 SS G_CDS: 0.17 Total: -15.97 kcal Atomic # 14 Polarization: 22.33 SS G_CDS: -5.02 Total: 17.31 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -35.38 -10.19 -45.57 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755205554.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.197 kcal (2) G-P(sol) polarization free energy of solvation -35.383 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.187 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.190 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.574 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.377 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds