Wall clock time and date at job start Tue Mar 31 2020 21:03:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.34776 * 120.00261 * 2 1 4 4 O 1.21586 * 119.99697 * 0.02562 * 3 2 1 5 5 N 1.34774 * 119.99919 * 180.02562 * 3 2 1 6 6 C 1.46503 * 119.99473 * 180.02562 * 5 3 2 7 7 C 1.50703 * 109.46635 * 179.97438 * 6 5 3 8 8 O 1.21276 * 120.00313 * 359.97438 * 7 6 5 9 9 N 1.34787 * 119.99759 * 179.97438 * 7 6 5 10 10 C 1.46924 * 120.63033 * 359.72119 * 9 7 6 11 11 C 1.53187 * 108.77642 * 126.66473 * 10 9 7 12 12 C 1.53041 * 109.31211 * 54.63373 * 11 10 9 13 13 C 1.53038 * 109.53768 * 298.63806 * 12 11 10 14 14 H 1.08999 * 109.49677 * 301.40907 * 13 12 11 15 15 C 1.53000 * 109.52227 * 181.33180 * 13 12 11 16 16 H 1.09001 * 110.64104 * 300.84356 * 15 13 12 17 17 C 1.55155 * 110.71945 * 177.70180 * 15 13 12 18 18 C 1.54914 * 101.58428 * 206.13241 * 17 15 13 19 19 N 1.47430 * 104.82983 * 37.00942 * 18 17 15 20 20 C 1.36938 * 125.65167 * 155.90634 * 19 18 17 21 21 H 1.07995 * 120.00048 * 179.97438 * 20 19 18 22 22 C 1.38819 * 119.99620 * 359.97438 * 20 19 18 23 23 N 1.31623 * 119.99928 * 359.97438 * 22 20 19 24 24 Si 1.86790 * 119.99903 * 179.97438 * 22 20 19 25 25 H 1.48508 * 109.47352 * 359.97438 * 24 22 20 26 26 H 1.48502 * 109.47506 * 119.99940 * 24 22 20 27 27 H 1.48498 * 109.47182 * 239.99956 * 24 22 20 28 28 C 1.47325 * 108.73549 * 335.71900 * 19 18 17 29 29 C 1.46926 * 120.62918 * 180.02562 * 9 7 6 30 30 H 1.08995 * 109.47200 * 299.99665 * 1 2 3 31 31 H 1.09003 * 109.47228 * 59.99795 * 1 2 3 32 32 H 1.09002 * 109.46946 * 179.97438 * 1 2 3 33 33 H 0.97002 * 119.99606 * 180.02562 * 2 1 3 34 34 H 0.96994 * 120.00328 * 359.97438 * 5 3 2 35 35 H 1.08998 * 109.47220 * 60.00105 * 6 5 3 36 36 H 1.09001 * 109.47400 * 299.99959 * 6 5 3 37 37 H 1.09003 * 109.58516 * 246.45674 * 10 9 7 38 38 H 1.09002 * 109.58479 * 6.87832 * 10 9 7 39 39 H 1.08999 * 109.49975 * 294.68379 * 11 10 9 40 40 H 1.09004 * 109.52338 * 174.59879 * 11 10 9 41 41 H 1.09003 * 109.46022 * 178.61192 * 12 11 10 42 42 H 1.09007 * 109.45589 * 58.65622 * 12 11 10 43 43 H 1.09003 * 111.00529 * 324.20582 * 17 15 13 44 44 H 1.08997 * 111.00634 * 88.05985 * 17 15 13 45 45 H 1.08995 * 110.36756 * 155.84338 * 18 17 15 46 46 H 1.08998 * 110.37143 * 278.17536 * 18 17 15 47 47 H 0.96999 * 119.99352 * 180.02562 * 23 22 20 48 48 H 1.09007 * 110.05773 * 241.87338 * 28 19 18 49 49 H 1.08993 * 109.85107 * 120.61238 * 28 19 18 50 50 H 1.09002 * 109.58798 * 353.11768 * 29 9 7 51 51 H 1.08996 * 109.58371 * 113.54749 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 1.5310 2.2201 0.0005 5 7 3.4867 1.1671 -0.0005 6 6 4.2191 2.4359 0.0000 7 6 5.7008 2.1604 -0.0001 8 8 6.1050 1.0170 -0.0001 9 7 6.5767 3.1849 -0.0001 10 6 6.1022 4.5754 -0.0062 11 6 6.7584 5.3254 1.1572 12 6 8.2788 5.1796 1.0601 13 6 8.6587 3.7007 1.1631 14 1 8.2948 3.2965 2.1077 15 6 10.1807 3.5582 1.0993 16 1 10.5664 3.9695 0.1664 17 6 10.6001 2.0730 1.2593 18 6 12.0294 2.2142 1.8400 19 7 11.9562 3.3765 2.7440 20 6 12.7868 3.6149 3.8063 21 1 12.6506 4.4997 4.4103 22 6 13.8039 2.7192 4.1068 23 7 13.9695 1.6405 3.3709 24 14 14.9374 3.0447 5.5553 25 1 14.5441 4.3153 6.2159 26 1 14.8314 1.9273 6.5277 27 1 16.3381 3.1506 5.0738 28 6 10.8445 4.2419 2.3132 29 6 8.0241 2.9323 -0.0008 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5139 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 1.9499 -0.8401 -0.0004 34 1 3.9716 0.3271 -0.0005 35 1 3.9562 3.0068 0.8905 36 1 3.9555 3.0081 -0.8894 37 1 6.3759 5.0507 -0.9482 38 1 5.0188 4.5923 0.1128 39 1 6.4124 4.9060 2.1018 40 1 6.4903 6.3808 1.1077 41 1 8.7493 5.7329 1.8728 42 1 8.6213 5.5768 0.1045 43 1 9.9438 1.5548 1.9585 44 1 10.6188 1.5661 0.2945 45 1 12.3031 1.3177 2.3962 46 1 12.7470 2.3999 1.0409 47 1 14.6800 1.0145 3.5811 48 1 11.2240 5.2222 2.0248 49 1 10.1211 4.3452 3.1218 50 1 8.2088 1.8651 0.1218 51 1 8.4541 3.2739 -0.9423 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755205554.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:03:22 Heat of formation + Delta-G solvation = -67.245155 kcal Electronic energy + Delta-G solvation = -29881.470856 eV Core-core repulsion = 25815.196858 eV Total energy + Delta-G solvation = -4066.273998 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 1.45 seconds Orbital eigenvalues (eV) -41.64721 -40.80262 -39.67619 -38.04689 -35.73253 -35.47408 -35.21176 -33.66608 -32.54664 -30.74614 -29.93148 -28.55989 -26.94206 -26.61096 -25.54370 -23.87137 -22.37923 -21.93997 -21.68425 -20.74209 -20.36604 -19.60484 -18.85960 -17.89101 -17.74142 -17.16001 -16.89992 -16.66016 -16.39102 -16.04551 -15.65230 -15.40377 -15.31931 -15.15075 -14.93324 -14.62938 -14.28777 -14.17175 -13.99143 -13.90153 -13.63040 -13.42885 -13.35368 -13.25261 -13.01057 -12.85209 -12.76248 -12.42551 -12.07133 -12.06333 -11.95159 -11.78904 -11.67688 -11.52458 -11.39385 -11.34108 -11.03619 -10.88053 -10.74198 -10.48899 -9.87752 -9.66316 -8.87973 -7.77784 -5.22057 1.42548 1.44691 1.45979 1.48929 1.56334 2.07513 2.09003 2.48843 3.31047 3.31831 3.33965 3.65604 3.71714 3.79732 3.93621 4.09455 4.19374 4.23579 4.29647 4.31657 4.38577 4.44673 4.48548 4.58514 4.63701 4.69125 4.71894 4.80011 4.86618 4.90566 4.92095 4.97342 4.99290 5.09601 5.17641 5.18600 5.26942 5.37914 5.40909 5.46267 5.48101 5.52283 5.55847 5.66818 5.82629 5.90871 6.30701 6.31186 6.95208 7.01695 7.10649 7.49731 7.79046 8.43433 9.24303 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.019876 B = 0.002069 C = 0.001977 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1408.413865 B =13533.028456 C =14157.672258 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.104 3.896 2 N -0.740 5.740 3 C 0.701 3.299 4 O -0.631 6.631 5 N -0.733 5.733 6 C 0.126 3.874 7 C 0.508 3.492 8 O -0.576 6.576 9 N -0.602 5.602 10 C 0.099 3.901 11 C -0.130 4.130 12 C -0.115 4.115 13 C -0.075 4.075 14 H 0.053 0.947 15 C -0.076 4.076 16 H 0.086 0.914 17 C -0.124 4.124 18 C 0.152 3.848 19 N -0.630 5.630 20 C -0.237 4.237 21 H 0.081 0.919 22 C -0.073 4.073 23 N -0.951 5.951 24 Si 0.981 3.019 25 H -0.266 1.266 26 H -0.292 1.292 27 H -0.292 1.292 28 C 0.141 3.859 29 C 0.122 3.878 30 H 0.048 0.952 31 H 0.050 0.950 32 H 0.111 0.889 33 H 0.413 0.587 34 H 0.411 0.589 35 H 0.106 0.894 36 H 0.112 0.888 37 H 0.095 0.905 38 H 0.106 0.894 39 H 0.057 0.943 40 H 0.102 0.898 41 H 0.061 0.939 42 H 0.079 0.921 43 H 0.051 0.949 44 H 0.079 0.921 45 H 0.067 0.933 46 H -0.013 1.013 47 H 0.246 0.754 48 H 0.024 0.976 49 H 0.022 0.978 50 H 0.072 0.928 51 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.993 2.414 -11.013 28.333 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.041 4.041 2 N -0.396 5.396 3 C 0.400 3.600 4 O -0.513 6.513 5 N -0.392 5.392 6 C -0.001 4.001 7 C 0.297 3.703 8 O -0.456 6.456 9 N -0.333 5.333 10 C -0.023 4.023 11 C -0.168 4.168 12 C -0.153 4.153 13 C -0.095 4.095 14 H 0.072 0.928 15 C -0.095 4.095 16 H 0.104 0.896 17 C -0.163 4.163 18 C 0.027 3.973 19 N -0.356 5.356 20 C -0.366 4.366 21 H 0.098 0.902 22 C -0.265 4.265 23 N -0.601 5.601 24 Si 0.809 3.191 25 H -0.190 1.190 26 H -0.219 1.219 27 H -0.219 1.219 28 C 0.016 3.984 29 C 0.000 4.000 30 H 0.067 0.933 31 H 0.069 0.931 32 H 0.129 0.871 33 H 0.249 0.751 34 H 0.249 0.751 35 H 0.123 0.877 36 H 0.130 0.870 37 H 0.114 0.886 38 H 0.124 0.876 39 H 0.076 0.924 40 H 0.121 0.879 41 H 0.080 0.920 42 H 0.098 0.902 43 H 0.069 0.931 44 H 0.098 0.902 45 H 0.085 0.915 46 H 0.005 0.995 47 H 0.056 0.944 48 H 0.042 0.958 49 H 0.040 0.960 50 H 0.091 0.909 51 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -26.198 2.719 -10.908 28.508 hybrid contribution 1.726 -0.877 0.967 2.164 sum -24.472 1.842 -9.941 26.478 Atomic orbital electron populations 1.21562 0.76931 1.04128 1.01431 1.44892 1.08512 1.06853 1.79325 1.16031 0.81459 0.84773 0.77722 1.90901 1.68638 1.31784 1.59937 1.44758 1.04497 1.10045 1.79876 1.20953 0.86632 0.86883 1.05660 1.20797 0.89144 0.84750 0.75640 1.90689 1.80299 1.22538 1.52076 1.48130 1.06230 1.07289 1.71683 1.22151 1.00565 0.79173 1.00368 1.21907 0.94572 1.02042 0.98266 1.21606 0.96485 0.94064 1.03121 1.21340 0.92758 0.97311 0.98043 0.92848 1.22042 0.94441 0.95138 0.97880 0.89571 1.22868 0.96767 0.96447 1.00218 1.21701 0.92393 0.92158 0.91007 1.44951 1.34612 1.23966 1.32082 1.19518 1.07445 1.05478 1.04145 0.90150 1.25682 1.01082 0.97344 1.02362 1.70094 1.34433 1.13792 1.41753 0.84963 0.78102 0.77527 0.78469 1.18989 1.21892 1.21868 1.21513 0.88979 0.93135 0.94747 1.21595 0.78836 1.00917 0.98681 0.93306 0.93116 0.87080 0.75109 0.75101 0.87656 0.86982 0.88636 0.87579 0.92404 0.87930 0.92041 0.90187 0.93052 0.90224 0.91509 0.99518 0.94435 0.95809 0.95973 0.90920 0.89630 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.02 10.70 127.77 1.37 2.39 16 2 N -0.74 -9.53 5.72 -500.20 -2.86 -12.39 16 3 C 0.70 14.00 8.57 179.06 1.53 15.54 16 4 O -0.63 -17.18 16.34 -3.99 -0.07 -17.24 16 5 N -0.73 -13.06 5.53 -482.29 -2.67 -15.73 16 6 C 0.13 2.09 4.50 85.63 0.39 2.47 16 7 C 0.51 10.72 7.77 87.66 0.68 11.40 16 8 O -0.58 -16.43 15.08 -3.02 -0.05 -16.48 16 9 N -0.60 -11.11 2.97 -818.83 -2.43 -13.54 16 10 C 0.10 1.11 6.34 86.36 0.55 1.66 16 11 C -0.13 -1.71 6.08 30.67 0.19 -1.53 16 12 C -0.12 -2.15 5.01 30.62 0.15 -1.99 16 13 C -0.07 -1.86 1.72 -10.70 -0.02 -1.88 16 14 H 0.05 1.57 8.12 -2.39 -0.02 1.55 16 15 C -0.08 -2.43 2.49 -9.60 -0.02 -2.45 16 16 H 0.09 2.54 8.14 -2.39 -0.02 2.52 16 17 C -0.12 -4.76 5.61 31.99 0.18 -4.58 16 18 C 0.15 7.80 5.89 86.86 0.51 8.31 16 19 N -0.63 -33.39 3.40 -691.20 -2.35 -35.74 16 20 C -0.24 -13.63 10.28 84.04 0.86 -12.77 16 21 H 0.08 4.43 7.83 -2.91 -0.02 4.41 16 22 C -0.07 -4.23 5.49 84.86 0.47 -3.77 16 23 N -0.95 -58.35 10.09 21.65 0.22 -58.13 16 24 Si 0.98 46.68 29.55 68.60 2.03 48.71 16 25 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 26 H -0.29 -13.84 7.11 99.48 0.71 -13.13 16 27 H -0.29 -13.82 7.11 99.48 0.71 -13.11 16 28 C 0.14 5.76 5.91 86.67 0.51 6.27 16 29 C 0.12 2.75 5.42 86.37 0.47 3.21 16 30 H 0.05 0.60 8.14 -2.39 -0.02 0.58 16 31 H 0.05 0.60 8.14 -2.39 -0.02 0.58 16 32 H 0.11 0.30 8.14 -2.39 -0.02 0.28 16 33 H 0.41 3.06 8.84 -92.71 -0.82 2.24 16 34 H 0.41 6.99 7.45 -92.71 -0.69 6.29 16 35 H 0.11 1.60 7.70 -2.39 -0.02 1.59 16 36 H 0.11 1.53 7.94 -2.39 -0.02 1.51 16 37 H 0.10 0.77 8.14 -2.39 -0.02 0.75 16 38 H 0.11 0.80 5.94 -2.39 -0.01 0.79 16 39 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 40 H 0.10 0.90 8.14 -2.38 -0.02 0.88 16 41 H 0.06 1.31 7.29 -2.39 -0.02 1.29 16 42 H 0.08 1.28 8.14 -2.38 -0.02 1.26 16 43 H 0.05 2.04 8.05 -2.39 -0.02 2.02 16 44 H 0.08 2.67 8.14 -2.39 -0.02 2.65 16 45 H 0.07 3.93 5.87 -2.39 -0.01 3.91 16 46 H -0.01 -0.72 8.14 -2.39 -0.02 -0.74 16 47 H 0.25 14.60 8.31 -92.71 -0.77 13.83 16 48 H 0.02 0.95 8.14 -2.38 -0.02 0.93 16 49 H 0.02 0.91 7.68 -2.39 -0.02 0.89 16 50 H 0.07 2.03 6.43 -2.39 -0.02 2.01 16 51 H 0.09 1.67 8.14 -2.39 -0.02 1.65 16 Total: -1.00 -80.12 396.92 -0.94 -81.06 By element: Atomic # 1 Polarization: 17.75 SS G_CDS: -0.57 Total: 17.18 kcal Atomic # 6 Polarization: 14.48 SS G_CDS: 7.81 Total: 22.30 kcal Atomic # 7 Polarization: -125.43 SS G_CDS: -10.09 Total: -135.52 kcal Atomic # 8 Polarization: -33.61 SS G_CDS: -0.11 Total: -33.72 kcal Atomic # 14 Polarization: 46.68 SS G_CDS: 2.03 Total: 48.71 kcal Total: -80.12 -0.94 -81.06 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755205554.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.813 kcal (2) G-P(sol) polarization free energy of solvation -80.122 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.310 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.935 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.058 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.245 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.46 seconds