Wall clock time and date at job start Tue Mar 31 2020 21:03:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.34773 * 120.00070 * 2 1 4 4 O 1.21589 * 120.00147 * 0.02562 * 3 2 1 5 5 N 1.34776 * 120.00046 * 179.97438 * 3 2 1 6 6 C 1.46505 * 119.99942 * 180.02562 * 5 3 2 7 7 C 1.50706 * 109.46718 * 180.02562 * 6 5 3 8 8 O 1.21270 * 120.00172 * 359.97438 * 7 6 5 9 9 N 1.34777 * 119.99436 * 180.02562 * 7 6 5 10 10 C 1.46926 * 120.63269 * 0.02562 * 9 7 6 11 11 C 1.53191 * 108.77598 * 126.37751 * 10 9 7 12 12 C 1.53040 * 109.31324 * 54.62921 * 11 10 9 13 13 C 1.53034 * 109.54181 * 298.63736 * 12 11 10 14 14 H 1.09003 * 109.52480 * 301.39925 * 13 12 11 15 15 C 1.52995 * 109.49742 * 181.31660 * 13 12 11 16 16 H 1.08998 * 110.91810 * 302.60990 * 15 13 12 17 17 C 1.55158 * 111.00553 * 66.51496 * 15 13 12 18 18 C 1.54339 * 103.02072 * 153.38102 * 17 15 13 19 19 N 1.47021 * 107.26633 * 338.13723 * 18 17 15 20 20 C 1.36931 * 125.64962 * 178.85047 * 19 18 17 21 21 H 1.08002 * 120.00438 * 179.69777 * 20 19 18 22 22 C 1.38817 * 119.99680 * 359.41735 * 20 19 18 23 23 N 1.31614 * 119.99888 * 0.27479 * 22 20 19 24 24 Si 1.86803 * 119.99862 * 180.27671 * 22 20 19 25 25 H 1.48508 * 109.46872 * 359.97438 * 24 22 20 26 26 H 1.48494 * 109.47141 * 119.99997 * 24 22 20 27 27 H 1.48498 * 109.47018 * 240.00044 * 24 22 20 28 28 C 1.47426 * 108.70417 * 358.58904 * 19 18 17 29 29 C 1.46927 * 120.62758 * 180.02562 * 9 7 6 30 30 H 1.09000 * 109.47131 * 299.99866 * 1 2 3 31 31 H 1.09008 * 109.46990 * 59.99675 * 1 2 3 32 32 H 1.08998 * 109.47457 * 179.97438 * 1 2 3 33 33 H 0.96998 * 119.99539 * 180.02562 * 2 1 3 34 34 H 0.97000 * 120.00293 * 0.02562 * 5 3 2 35 35 H 1.08996 * 109.46976 * 60.00607 * 6 5 3 36 36 H 1.08992 * 109.46952 * 300.00046 * 6 5 3 37 37 H 1.09003 * 109.58336 * 246.15928 * 10 9 7 38 38 H 1.08994 * 109.58637 * 6.58240 * 10 9 7 39 39 H 1.09004 * 109.49748 * 174.58731 * 11 10 9 40 40 H 1.09003 * 109.49084 * 294.68325 * 11 10 9 41 41 H 1.09007 * 109.45646 * 178.61656 * 12 11 10 42 42 H 1.09001 * 109.45697 * 58.66419 * 12 11 10 43 43 H 1.09000 * 110.71528 * 271.93993 * 17 15 13 44 44 H 1.08994 * 110.71626 * 35.03308 * 17 15 13 45 45 H 1.09000 * 109.98868 * 218.66271 * 18 17 15 46 46 H 1.09001 * 109.77953 * 97.49455 * 18 17 15 47 47 H 0.97005 * 119.99715 * 179.97438 * 23 22 20 48 48 H 1.09003 * 110.37118 * 143.18886 * 28 19 18 49 49 H 1.09001 * 110.36564 * 265.51518 * 28 19 18 50 50 H 1.09003 * 109.58559 * 113.83874 * 29 9 7 51 51 H 1.09003 * 109.58750 * 353.41209 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 1.5310 2.2202 0.0005 5 7 3.4866 1.1672 0.0005 6 6 4.2192 2.4359 0.0011 7 6 5.7008 2.1605 0.0010 8 8 6.1050 1.0171 0.0009 9 7 6.5766 3.1849 0.0019 10 6 6.1021 4.5754 0.0037 11 6 6.7573 5.3185 1.1722 12 6 8.2778 5.1732 1.0756 13 6 8.6576 3.6938 1.1702 14 1 8.2932 3.2836 2.1120 15 6 10.1797 3.5523 1.1065 16 1 10.5738 3.9957 0.1921 17 6 10.8491 4.1752 2.3601 18 6 12.1672 3.3814 2.4810 19 7 11.9803 2.1130 1.7614 20 6 12.9252 1.1332 1.6126 21 1 12.6871 0.2316 1.0677 22 6 14.1909 1.3011 2.1573 23 7 14.4811 2.3998 2.8213 24 14 15.4824 -0.0322 1.9477 25 1 14.9091 -1.1583 1.1677 26 1 16.6553 0.5238 1.2264 27 1 15.9091 -0.5222 3.2830 28 6 10.6052 2.0680 1.2320 29 6 8.0240 2.9323 0.0013 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3634 -1.0276 -0.0005 33 1 1.9499 -0.8401 -0.0004 34 1 3.9717 0.3271 0.0005 35 1 3.9556 3.0072 0.8911 36 1 3.9562 3.0076 -0.8888 37 1 6.3768 5.0564 -0.9352 38 1 5.0187 4.5917 0.1217 39 1 6.4891 6.3741 1.1282 40 1 6.4103 4.8933 2.1140 41 1 8.7475 5.7217 1.8921 42 1 8.6212 5.5762 0.1228 43 1 11.0477 5.2356 2.2044 44 1 10.2278 4.0262 3.2431 45 1 12.3880 3.1835 3.5299 46 1 12.9815 3.9475 2.0290 47 1 15.3655 2.5170 3.2023 48 1 10.5904 1.5853 0.2547 49 1 9.9486 1.5425 1.9255 50 1 8.4551 3.2795 -0.9378 51 1 8.2086 1.8644 0.1178 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755205555.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:03:27 Heat of formation + Delta-G solvation = -42.627659 kcal Electronic energy + Delta-G solvation = -29893.688440 eV Core-core repulsion = 25828.481937 eV Total energy + Delta-G solvation = -4065.206503 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -40.78755 -39.95726 -38.39494 -36.78248 -35.05973 -34.64270 -33.74454 -32.32141 -31.24888 -29.38764 -28.67867 -27.10221 -26.40516 -24.82725 -24.59855 -22.79151 -21.35031 -21.00809 -19.89198 -19.56938 -19.51852 -18.83554 -17.09505 -16.95763 -16.74203 -16.35239 -15.74124 -15.52433 -15.00520 -14.65171 -14.55757 -14.54265 -14.39284 -13.98130 -13.87196 -13.74058 -13.33469 -13.17791 -13.01746 -12.60791 -12.58552 -12.37303 -12.10612 -12.01174 -11.80116 -11.26765 -11.04831 -11.00880 -10.84475 -10.72949 -10.64012 -10.61023 -10.18475 -10.05169 -9.94486 -9.78480 -9.73115 -9.70515 -9.54416 -9.24323 -8.78929 -8.56265 -6.77485 -5.67080 -2.99826 2.19646 2.30866 2.84515 2.87424 3.42065 3.47683 3.50159 3.94420 4.09223 4.49852 4.56527 4.72358 4.78622 4.81502 4.90993 4.98698 4.99986 5.12077 5.16695 5.20163 5.40203 5.41650 5.49500 5.51110 5.62167 5.65855 5.70775 5.75717 5.87513 5.93597 5.96997 6.02840 6.05593 6.06057 6.24524 6.26241 6.38789 6.46323 6.53740 6.59569 6.62704 6.77892 7.02114 7.13110 7.61479 7.63891 7.68225 7.85049 7.87416 8.23907 8.31009 9.27220 9.87750 10.54318 11.44759 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.016849 B = 0.002195 C = 0.001986 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1661.438946 B =12752.132084 C =14096.531062 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.107 3.893 2 N -0.750 5.750 3 C 0.706 3.294 4 O -0.593 6.593 5 N -0.735 5.735 6 C 0.122 3.878 7 C 0.509 3.491 8 O -0.536 6.536 9 N -0.604 5.604 10 C 0.102 3.898 11 C -0.135 4.135 12 C -0.115 4.115 13 C -0.086 4.086 14 H 0.074 0.926 15 C -0.095 4.095 16 H 0.074 0.926 17 C -0.136 4.136 18 C 0.177 3.823 19 N -0.607 5.607 20 C -0.224 4.224 21 H 0.078 0.922 22 C -0.011 4.011 23 N -0.923 5.923 24 Si 0.911 3.089 25 H -0.280 1.280 26 H -0.291 1.291 27 H -0.291 1.291 28 C 0.140 3.860 29 C 0.115 3.885 30 H 0.058 0.942 31 H 0.058 0.942 32 H 0.076 0.924 33 H 0.400 0.600 34 H 0.409 0.591 35 H 0.097 0.903 36 H 0.097 0.903 37 H 0.074 0.926 38 H 0.084 0.916 39 H 0.076 0.924 40 H 0.067 0.933 41 H 0.071 0.929 42 H 0.064 0.936 43 H 0.057 0.943 44 H 0.054 0.946 45 H 0.039 0.961 46 H 0.045 0.955 47 H 0.250 0.750 48 H 0.036 0.964 49 H 0.017 0.983 50 H 0.070 0.930 51 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.360 3.468 -6.190 26.334 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.037 4.037 2 N -0.405 5.405 3 C 0.406 3.594 4 O -0.472 6.472 5 N -0.394 5.394 6 C -0.006 4.006 7 C 0.296 3.704 8 O -0.414 6.414 9 N -0.337 5.337 10 C -0.021 4.021 11 C -0.173 4.173 12 C -0.153 4.153 13 C -0.106 4.106 14 H 0.092 0.908 15 C -0.115 4.115 16 H 0.093 0.907 17 C -0.174 4.174 18 C 0.052 3.948 19 N -0.333 5.333 20 C -0.353 4.353 21 H 0.095 0.905 22 C -0.207 4.207 23 N -0.571 5.571 24 Si 0.742 3.258 25 H -0.205 1.205 26 H -0.218 1.218 27 H -0.218 1.218 28 C 0.014 3.986 29 C -0.006 4.006 30 H 0.077 0.923 31 H 0.077 0.923 32 H 0.094 0.906 33 H 0.233 0.767 34 H 0.246 0.754 35 H 0.115 0.885 36 H 0.115 0.885 37 H 0.093 0.907 38 H 0.103 0.897 39 H 0.095 0.905 40 H 0.086 0.914 41 H 0.089 0.911 42 H 0.083 0.917 43 H 0.076 0.924 44 H 0.073 0.927 45 H 0.058 0.942 46 H 0.063 0.937 47 H 0.061 0.939 48 H 0.055 0.945 49 H 0.035 0.965 50 H 0.088 0.912 51 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -25.489 3.786 -6.139 26.490 hybrid contribution 1.247 -1.329 0.004 1.822 sum -24.242 2.458 -6.135 25.127 Atomic orbital electron populations 1.21407 0.77915 1.02080 1.02318 1.44880 1.07847 1.07185 1.80630 1.15824 0.81337 0.84430 0.77829 1.90932 1.67948 1.30255 1.58041 1.44764 1.04689 1.09742 1.80182 1.20920 0.88392 0.86754 1.04570 1.20450 0.88268 0.85236 0.76479 1.90712 1.79579 1.20941 1.50125 1.48081 1.07168 1.05993 1.72483 1.21870 0.99315 0.81226 0.99667 1.21934 0.96654 1.00375 0.98373 1.21588 0.94479 0.96531 1.02674 1.21477 0.95648 0.95043 0.98421 0.90807 1.22318 0.91714 0.98386 0.99071 0.90737 1.22886 0.99256 0.98993 0.96275 1.21133 0.91334 0.85569 0.96739 1.44496 1.07953 1.18352 1.62488 1.19123 0.90684 0.96377 1.29099 0.90453 1.24804 0.97595 0.97778 1.00542 1.69984 1.20592 1.25822 1.40696 0.86051 0.81697 0.80834 0.77259 1.20513 1.21819 1.21823 1.21583 0.87594 0.92944 0.96454 1.21833 0.77386 1.02712 0.98705 0.92301 0.92332 0.90568 0.76674 0.75389 0.88474 0.88544 0.90749 0.89726 0.90544 0.91391 0.91055 0.91720 0.92420 0.92731 0.94246 0.93678 0.93917 0.94536 0.96526 0.91176 0.88384 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 0.62 10.70 59.85 0.64 1.26 16 2 N -0.75 -5.42 5.72 -72.07 -0.41 -5.83 16 3 C 0.71 7.48 8.57 -86.92 -0.74 6.74 16 4 O -0.59 -8.34 16.34 5.29 0.09 -8.25 16 5 N -0.73 -7.05 5.53 -66.41 -0.37 -7.42 16 6 C 0.12 1.12 4.50 -5.19 -0.02 1.10 16 7 C 0.51 5.80 7.77 -10.98 -0.09 5.72 16 8 O -0.54 -7.93 15.08 5.57 0.08 -7.85 16 9 N -0.60 -6.30 2.97 -172.75 -0.51 -6.82 16 10 C 0.10 0.75 6.34 -3.71 -0.02 0.73 16 11 C -0.14 -1.05 6.08 -26.61 -0.16 -1.21 16 12 C -0.12 -1.15 5.04 -26.69 -0.13 -1.29 16 13 C -0.09 -1.10 1.85 -90.49 -0.17 -1.27 16 14 H 0.07 1.04 8.11 -51.93 -0.42 0.62 16 15 C -0.09 -1.56 2.57 -88.47 -0.23 -1.79 16 16 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 17 C -0.14 -2.46 5.58 -24.89 -0.14 -2.60 16 18 C 0.18 4.33 5.38 -3.06 -0.02 4.32 16 19 N -0.61 -15.77 3.39 -170.06 -0.58 -16.35 16 20 C -0.22 -6.40 10.28 -15.06 -0.15 -6.55 16 21 H 0.08 2.14 7.83 -52.49 -0.41 1.73 16 22 C -0.01 -0.33 5.49 -17.43 -0.10 -0.42 16 23 N -0.92 -27.55 10.31 55.49 0.57 -26.98 16 24 Si 0.91 22.52 29.55 -169.99 -5.02 17.49 16 25 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 26 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 27 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 28 C 0.14 2.92 5.74 -2.52 -0.01 2.90 16 29 C 0.12 1.43 5.41 -3.69 -0.02 1.41 16 30 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 31 H 0.06 0.38 8.14 -51.92 -0.42 -0.05 16 32 H 0.08 0.21 8.14 -51.93 -0.42 -0.22 16 33 H 0.40 1.87 8.84 -40.82 -0.36 1.50 16 34 H 0.41 3.71 7.45 -40.82 -0.30 3.41 16 35 H 0.10 0.83 7.69 -51.93 -0.40 0.44 16 36 H 0.10 0.80 7.94 -51.93 -0.41 0.38 16 37 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 38 H 0.08 0.48 5.93 -51.93 -0.31 0.17 16 39 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 40 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 41 H 0.07 0.75 7.46 -51.92 -0.39 0.36 16 42 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 43 H 0.06 0.93 8.11 -51.93 -0.42 0.51 16 44 H 0.05 0.94 8.01 -51.93 -0.42 0.53 16 45 H 0.04 1.07 7.53 -51.93 -0.39 0.68 16 46 H 0.05 1.22 7.36 -51.93 -0.38 0.84 16 47 H 0.25 7.24 8.31 -40.82 -0.34 6.90 16 48 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 49 H 0.02 0.36 8.04 -51.93 -0.42 -0.06 16 50 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 51 H 0.10 1.46 6.42 -51.93 -0.33 1.13 16 LS Contribution 397.95 15.07 6.00 6.00 Total: -1.00 -35.83 397.95 -10.25 -46.08 By element: Atomic # 1 Polarization: 9.60 SS G_CDS: -8.73 Total: 0.87 kcal Atomic # 6 Polarization: 10.41 SS G_CDS: -1.37 Total: 9.04 kcal Atomic # 7 Polarization: -62.09 SS G_CDS: -1.30 Total: -63.38 kcal Atomic # 8 Polarization: -16.27 SS G_CDS: 0.17 Total: -16.10 kcal Atomic # 14 Polarization: 22.52 SS G_CDS: -5.02 Total: 17.49 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -35.83 -10.25 -46.08 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755205555.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.450 kcal (2) G-P(sol) polarization free energy of solvation -35.829 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.379 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.248 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.077 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.628 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds