Wall clock time and date at job start Tue Mar 31 2020 21:03:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.34773 * 120.00070 * 2 1 4 4 O 1.21589 * 120.00147 * 0.02562 * 3 2 1 5 5 N 1.34776 * 120.00046 * 179.97438 * 3 2 1 6 6 C 1.46505 * 119.99942 * 180.02562 * 5 3 2 7 7 C 1.50706 * 109.46718 * 180.02562 * 6 5 3 8 8 O 1.21270 * 120.00172 * 359.97438 * 7 6 5 9 9 N 1.34777 * 119.99436 * 180.02562 * 7 6 5 10 10 C 1.46926 * 120.63269 * 0.02562 * 9 7 6 11 11 C 1.53191 * 108.77598 * 126.37751 * 10 9 7 12 12 C 1.53040 * 109.31324 * 54.62921 * 11 10 9 13 13 C 1.53034 * 109.54181 * 298.63736 * 12 11 10 14 14 H 1.09003 * 109.52480 * 301.39925 * 13 12 11 15 15 C 1.52995 * 109.49742 * 181.31660 * 13 12 11 16 16 H 1.08998 * 110.91810 * 302.60990 * 15 13 12 17 17 C 1.55158 * 111.00553 * 66.51496 * 15 13 12 18 18 C 1.54339 * 103.02072 * 153.38102 * 17 15 13 19 19 N 1.47021 * 107.26633 * 338.13723 * 18 17 15 20 20 C 1.36931 * 125.64962 * 178.85047 * 19 18 17 21 21 H 1.08002 * 120.00438 * 179.69777 * 20 19 18 22 22 C 1.38817 * 119.99680 * 359.41735 * 20 19 18 23 23 N 1.31614 * 119.99888 * 0.27479 * 22 20 19 24 24 Si 1.86803 * 119.99862 * 180.27671 * 22 20 19 25 25 H 1.48508 * 109.46872 * 359.97438 * 24 22 20 26 26 H 1.48494 * 109.47141 * 119.99997 * 24 22 20 27 27 H 1.48498 * 109.47018 * 240.00044 * 24 22 20 28 28 C 1.47426 * 108.70417 * 358.58904 * 19 18 17 29 29 C 1.46927 * 120.62758 * 180.02562 * 9 7 6 30 30 H 1.09000 * 109.47131 * 299.99866 * 1 2 3 31 31 H 1.09008 * 109.46990 * 59.99675 * 1 2 3 32 32 H 1.08998 * 109.47457 * 179.97438 * 1 2 3 33 33 H 0.96998 * 119.99539 * 180.02562 * 2 1 3 34 34 H 0.97000 * 120.00293 * 0.02562 * 5 3 2 35 35 H 1.08996 * 109.46976 * 60.00607 * 6 5 3 36 36 H 1.08992 * 109.46952 * 300.00046 * 6 5 3 37 37 H 1.09003 * 109.58336 * 246.15928 * 10 9 7 38 38 H 1.08994 * 109.58637 * 6.58240 * 10 9 7 39 39 H 1.09004 * 109.49748 * 174.58731 * 11 10 9 40 40 H 1.09003 * 109.49084 * 294.68325 * 11 10 9 41 41 H 1.09007 * 109.45646 * 178.61656 * 12 11 10 42 42 H 1.09001 * 109.45697 * 58.66419 * 12 11 10 43 43 H 1.09000 * 110.71528 * 271.93993 * 17 15 13 44 44 H 1.08994 * 110.71626 * 35.03308 * 17 15 13 45 45 H 1.09000 * 109.98868 * 218.66271 * 18 17 15 46 46 H 1.09001 * 109.77953 * 97.49455 * 18 17 15 47 47 H 0.97005 * 119.99715 * 179.97438 * 23 22 20 48 48 H 1.09003 * 110.37118 * 143.18886 * 28 19 18 49 49 H 1.09001 * 110.36564 * 265.51518 * 28 19 18 50 50 H 1.09003 * 109.58559 * 113.83874 * 29 9 7 51 51 H 1.09003 * 109.58750 * 353.41209 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 1.5310 2.2202 0.0005 5 7 3.4866 1.1672 0.0005 6 6 4.2192 2.4359 0.0011 7 6 5.7008 2.1605 0.0010 8 8 6.1050 1.0171 0.0009 9 7 6.5766 3.1849 0.0019 10 6 6.1021 4.5754 0.0037 11 6 6.7573 5.3185 1.1722 12 6 8.2778 5.1732 1.0756 13 6 8.6576 3.6938 1.1702 14 1 8.2932 3.2836 2.1120 15 6 10.1797 3.5523 1.1065 16 1 10.5738 3.9957 0.1921 17 6 10.8491 4.1752 2.3601 18 6 12.1672 3.3814 2.4810 19 7 11.9803 2.1130 1.7614 20 6 12.9252 1.1332 1.6126 21 1 12.6871 0.2316 1.0677 22 6 14.1909 1.3011 2.1573 23 7 14.4811 2.3998 2.8213 24 14 15.4824 -0.0322 1.9477 25 1 14.9091 -1.1583 1.1677 26 1 16.6553 0.5238 1.2264 27 1 15.9091 -0.5222 3.2830 28 6 10.6052 2.0680 1.2320 29 6 8.0240 2.9323 0.0013 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3634 -1.0276 -0.0005 33 1 1.9499 -0.8401 -0.0004 34 1 3.9717 0.3271 0.0005 35 1 3.9556 3.0072 0.8911 36 1 3.9562 3.0076 -0.8888 37 1 6.3768 5.0564 -0.9352 38 1 5.0187 4.5917 0.1217 39 1 6.4891 6.3741 1.1282 40 1 6.4103 4.8933 2.1140 41 1 8.7475 5.7217 1.8921 42 1 8.6212 5.5762 0.1228 43 1 11.0477 5.2356 2.2044 44 1 10.2278 4.0262 3.2431 45 1 12.3880 3.1835 3.5299 46 1 12.9815 3.9475 2.0290 47 1 15.3655 2.5170 3.2023 48 1 10.5904 1.5853 0.2547 49 1 9.9486 1.5425 1.9255 50 1 8.4551 3.2795 -0.9378 51 1 8.2086 1.8644 0.1178 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755205555.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:03:26 Heat of formation + Delta-G solvation = -69.089460 kcal Electronic energy + Delta-G solvation = -29894.835910 eV Core-core repulsion = 25828.481937 eV Total energy + Delta-G solvation = -4066.353973 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 1.38 seconds Orbital eigenvalues (eV) -41.64450 -40.79795 -39.67162 -38.06666 -35.73330 -35.47212 -35.21155 -33.65394 -32.48228 -31.00282 -29.72727 -28.53965 -27.14558 -26.36630 -25.66328 -23.90586 -22.25422 -21.91027 -21.70195 -20.85585 -20.36104 -19.62955 -18.82731 -17.87936 -17.72640 -17.15052 -16.82339 -16.61736 -16.40981 -16.06434 -15.66673 -15.46626 -15.31311 -15.13982 -14.94447 -14.65039 -14.28983 -14.06754 -13.91803 -13.91163 -13.77367 -13.54913 -13.38050 -13.28307 -13.01199 -12.86546 -12.78078 -12.22224 -12.10662 -12.02963 -11.85248 -11.80770 -11.67590 -11.53278 -11.45822 -11.36623 -11.05862 -10.88516 -10.72831 -10.48887 -9.87850 -9.65510 -8.90257 -7.86508 -5.21817 1.42988 1.43202 1.44485 1.48752 1.55078 2.07569 2.08852 2.47851 3.30732 3.31661 3.34126 3.62330 3.67374 3.87075 3.95830 4.11518 4.18155 4.26860 4.29434 4.31574 4.34048 4.46248 4.48385 4.57311 4.65565 4.69035 4.69897 4.82412 4.86601 4.91890 4.94519 4.97543 4.98645 5.10547 5.16159 5.18781 5.28089 5.38676 5.42713 5.44831 5.47959 5.51961 5.58075 5.69269 5.78666 5.90519 6.19677 6.31245 6.95318 7.01644 7.09989 7.49486 7.77594 8.42192 9.23948 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.016849 B = 0.002195 C = 0.001986 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1661.438946 B =12752.132084 C =14096.531062 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.104 3.896 2 N -0.741 5.741 3 C 0.701 3.299 4 O -0.631 6.631 5 N -0.734 5.734 6 C 0.127 3.873 7 C 0.507 3.493 8 O -0.578 6.578 9 N -0.601 5.601 10 C 0.097 3.903 11 C -0.130 4.130 12 C -0.113 4.113 13 C -0.074 4.074 14 H 0.060 0.940 15 C -0.076 4.076 16 H 0.080 0.920 17 C -0.119 4.119 18 C 0.182 3.818 19 N -0.630 5.630 20 C -0.242 4.242 21 H 0.078 0.922 22 C -0.069 4.069 23 N -0.951 5.951 24 Si 0.979 3.021 25 H -0.267 1.267 26 H -0.289 1.289 27 H -0.292 1.292 28 C 0.136 3.864 29 C 0.119 3.881 30 H 0.049 0.951 31 H 0.050 0.950 32 H 0.110 0.890 33 H 0.413 0.587 34 H 0.411 0.589 35 H 0.108 0.892 36 H 0.112 0.888 37 H 0.093 0.907 38 H 0.106 0.894 39 H 0.104 0.896 40 H 0.061 0.939 41 H 0.071 0.929 42 H 0.076 0.924 43 H 0.085 0.915 44 H 0.064 0.936 45 H 0.000 1.000 46 H 0.012 0.988 47 H 0.247 0.753 48 H 0.036 0.964 49 H 0.011 0.989 50 H 0.080 0.920 51 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.415 4.321 -7.213 28.676 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.040 4.040 2 N -0.396 5.396 3 C 0.400 3.600 4 O -0.512 6.512 5 N -0.392 5.392 6 C 0.000 4.000 7 C 0.296 3.704 8 O -0.458 6.458 9 N -0.333 5.333 10 C -0.024 4.024 11 C -0.167 4.167 12 C -0.150 4.150 13 C -0.093 4.093 14 H 0.078 0.922 15 C -0.095 4.095 16 H 0.098 0.902 17 C -0.157 4.157 18 C 0.057 3.943 19 N -0.356 5.356 20 C -0.372 4.372 21 H 0.096 0.904 22 C -0.262 4.262 23 N -0.600 5.600 24 Si 0.807 3.193 25 H -0.191 1.191 26 H -0.216 1.216 27 H -0.219 1.219 28 C 0.011 3.989 29 C -0.004 4.004 30 H 0.068 0.932 31 H 0.069 0.931 32 H 0.129 0.871 33 H 0.249 0.751 34 H 0.249 0.751 35 H 0.126 0.874 36 H 0.129 0.871 37 H 0.111 0.889 38 H 0.125 0.875 39 H 0.122 0.878 40 H 0.080 0.920 41 H 0.089 0.911 42 H 0.094 0.906 43 H 0.103 0.897 44 H 0.083 0.917 45 H 0.018 0.982 46 H 0.030 0.970 47 H 0.056 0.944 48 H 0.054 0.946 49 H 0.028 0.972 50 H 0.099 0.901 51 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -27.581 4.632 -7.176 28.873 hybrid contribution 1.869 -1.643 0.328 2.510 sum -25.712 2.988 -6.848 26.776 Atomic orbital electron populations 1.21564 0.76912 1.04121 1.01451 1.44897 1.08528 1.06858 1.79329 1.16024 0.81437 0.84775 0.77719 1.90899 1.68628 1.31747 1.59941 1.44773 1.04520 1.10063 1.79877 1.20953 0.86509 0.86861 1.05712 1.20832 0.89207 0.84746 0.75660 1.90696 1.80327 1.22662 1.52097 1.48133 1.06090 1.07363 1.71669 1.22177 1.00636 0.79127 1.00502 1.21915 0.94617 1.02066 0.98149 1.21580 0.96421 0.93651 1.03350 1.21318 0.92462 0.97598 0.97956 0.92156 1.22189 0.94399 0.94551 0.98409 0.90156 1.22729 0.95867 0.99519 0.97580 1.20939 0.93892 0.85649 0.93826 1.44850 1.09491 1.18343 1.62928 1.19494 0.91667 0.97164 1.28839 0.90385 1.25679 0.99712 1.00151 1.00656 1.70207 1.20680 1.27563 1.41568 0.84997 0.78778 0.78450 0.77049 1.19143 1.21606 1.21875 1.21751 0.85135 0.96247 0.95751 1.21613 0.79024 1.00814 0.98924 0.93238 0.93129 0.87109 0.75136 0.75144 0.87421 0.87062 0.88908 0.87549 0.87798 0.92037 0.91053 0.90552 0.89658 0.91705 0.98221 0.97002 0.94417 0.94582 0.97168 0.90141 0.91471 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.03 10.70 127.77 1.37 2.40 16 2 N -0.74 -9.65 5.72 -500.19 -2.86 -12.51 16 3 C 0.70 14.07 8.57 179.06 1.53 15.60 16 4 O -0.63 -17.11 16.34 -4.00 -0.07 -17.18 16 5 N -0.73 -13.25 5.53 -482.29 -2.67 -15.92 16 6 C 0.13 2.11 4.50 85.63 0.39 2.50 16 7 C 0.51 10.96 7.77 87.66 0.68 11.64 16 8 O -0.58 -17.11 15.08 -3.00 -0.05 -17.15 16 9 N -0.60 -11.30 2.97 -818.85 -2.43 -13.74 16 10 C 0.10 1.06 6.34 86.36 0.55 1.61 16 11 C -0.13 -1.50 6.08 30.67 0.19 -1.31 16 12 C -0.11 -1.87 5.04 30.62 0.15 -1.72 16 13 C -0.07 -1.76 1.85 -10.71 -0.02 -1.78 16 14 H 0.06 1.63 8.11 -2.39 -0.02 1.61 16 15 C -0.08 -2.42 2.57 -9.40 -0.02 -2.45 16 16 H 0.08 2.52 8.14 -2.39 -0.02 2.50 16 17 C -0.12 -4.22 5.58 31.79 0.18 -4.04 16 18 C 0.18 9.23 5.38 86.73 0.47 9.70 16 19 N -0.63 -33.79 3.39 -691.93 -2.35 -36.14 16 20 C -0.24 -14.22 10.28 84.04 0.86 -13.35 16 21 H 0.08 4.42 7.83 -2.91 -0.02 4.40 16 22 C -0.07 -4.08 5.49 84.86 0.47 -3.62 16 23 N -0.95 -58.84 10.31 21.65 0.22 -58.62 16 24 Si 0.98 47.24 29.55 68.60 2.03 49.27 16 25 H -0.27 -12.18 7.11 99.48 0.71 -11.47 16 26 H -0.29 -13.78 7.11 99.48 0.71 -13.07 16 27 H -0.29 -14.02 7.11 99.48 0.71 -13.31 16 28 C 0.14 5.76 5.74 86.86 0.50 6.26 16 29 C 0.12 2.81 5.41 86.37 0.47 3.28 16 30 H 0.05 0.60 8.14 -2.39 -0.02 0.58 16 31 H 0.05 0.60 8.14 -2.38 -0.02 0.58 16 32 H 0.11 0.31 8.14 -2.39 -0.02 0.30 16 33 H 0.41 3.17 8.84 -92.71 -0.82 2.35 16 34 H 0.41 7.18 7.45 -92.71 -0.69 6.49 16 35 H 0.11 1.59 7.69 -2.39 -0.02 1.58 16 36 H 0.11 1.55 7.94 -2.39 -0.02 1.53 16 37 H 0.09 0.76 8.14 -2.39 -0.02 0.74 16 38 H 0.11 0.76 5.93 -2.39 -0.01 0.74 16 39 H 0.10 0.74 8.14 -2.39 -0.02 0.72 16 40 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 41 H 0.07 1.23 7.46 -2.38 -0.02 1.21 16 42 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 43 H 0.08 2.59 8.11 -2.39 -0.02 2.57 16 44 H 0.06 2.18 8.01 -2.39 -0.02 2.16 16 45 H 0.00 -0.03 7.53 -2.39 -0.02 -0.04 16 46 H 0.01 0.66 7.36 -2.39 -0.02 0.65 16 47 H 0.25 14.74 8.31 -92.70 -0.77 13.97 16 48 H 0.04 1.51 8.14 -2.39 -0.02 1.49 16 49 H 0.01 0.46 8.04 -2.39 -0.02 0.44 16 50 H 0.08 1.74 8.14 -2.39 -0.02 1.72 16 51 H 0.07 2.03 6.42 -2.39 -0.02 2.02 16 Total: -1.00 -81.90 397.95 -0.99 -82.89 By element: Atomic # 1 Polarization: 14.95 SS G_CDS: -0.57 Total: 14.38 kcal Atomic # 6 Polarization: 16.97 SS G_CDS: 7.75 Total: 24.72 kcal Atomic # 7 Polarization: -126.84 SS G_CDS: -10.09 Total: -136.92 kcal Atomic # 8 Polarization: -34.22 SS G_CDS: -0.11 Total: -34.33 kcal Atomic # 14 Polarization: 47.24 SS G_CDS: 2.03 Total: 49.27 kcal Total: -81.90 -0.99 -82.89 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755205555.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.801 kcal (2) G-P(sol) polarization free energy of solvation -81.898 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.096 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.993 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.891 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.089 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.38 seconds