Wall clock time and date at job start Tue Mar 31 2020 20:57:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.34774 * 120.00012 * 2 1 4 4 O 1.21288 * 120.00304 * 355.00189 * 3 2 1 5 5 C 1.50705 * 120.00171 * 174.99074 * 3 2 1 6 6 H 1.08999 * 109.52102 * 308.64388 * 5 3 2 7 7 C 1.53034 * 109.49964 * 188.55629 * 5 3 2 8 8 C 1.53045 * 109.53689 * 178.68808 * 7 5 3 9 9 C 1.53194 * 109.31167 * 61.36421 * 8 7 5 10 10 N 1.46924 * 108.77502 * 305.36516 * 9 8 7 11 11 C 1.34781 * 120.62662 * 233.63239 * 10 9 8 12 12 N 1.34774 * 120.00476 * 4.66344 * 11 10 9 13 13 O 1.21590 * 119.99431 * 184.66836 * 11 10 9 14 14 C 1.46920 * 118.74141 * 53.61302 * 10 9 8 15 15 C 1.46497 * 119.99831 * 180.02562 * 2 1 3 16 16 H 1.09004 * 109.46761 * 182.15275 * 15 2 1 17 17 C 1.53001 * 109.46936 * 302.14993 * 15 2 1 18 18 N 1.46489 * 109.47328 * 305.00133 * 17 15 2 19 19 C 1.36932 * 120.00236 * 179.97438 * 18 17 15 20 20 H 1.08005 * 120.00024 * 0.02562 * 19 18 17 21 21 C 1.38811 * 120.00429 * 180.02562 * 19 18 17 22 22 N 1.31624 * 119.99898 * 0.02562 * 21 19 18 23 23 Si 1.86803 * 120.00227 * 179.97438 * 21 19 18 24 24 H 1.48506 * 109.46626 * 60.00564 * 23 21 19 25 25 H 1.48498 * 109.46919 * 179.97438 * 23 21 19 26 26 H 1.48488 * 109.47366 * 300.00249 * 23 21 19 27 27 C 1.52999 * 109.47561 * 62.15474 * 15 2 1 28 28 C 1.53004 * 117.49892 * 248.74944 * 27 15 2 29 29 C 1.52999 * 117.50244 * 180.08686 * 27 15 2 30 30 H 1.09004 * 109.46935 * 94.94438 * 1 2 3 31 31 H 1.08994 * 109.46981 * 214.94301 * 1 2 3 32 32 H 1.09003 * 109.47219 * 334.94805 * 1 2 3 33 33 H 1.08992 * 109.46056 * 58.66911 * 7 5 3 34 34 H 1.09005 * 109.44730 * 298.69800 * 7 5 3 35 35 H 1.09000 * 109.49561 * 301.41247 * 8 7 5 36 36 H 1.08998 * 109.49720 * 181.31493 * 8 7 5 37 37 H 1.09000 * 109.58461 * 65.15723 * 9 8 7 38 38 H 1.09003 * 109.58285 * 185.57557 * 9 8 7 39 39 H 0.97007 * 119.99506 * 4.93662 * 12 11 10 40 40 H 0.96994 * 120.00349 * 184.94828 * 12 11 10 41 41 H 1.09002 * 109.58837 * 186.60509 * 14 10 9 42 42 H 1.08998 * 109.58852 * 66.17075 * 14 10 9 43 43 H 1.09003 * 109.46886 * 65.00389 * 17 15 2 44 44 H 1.08999 * 109.47009 * 185.00095 * 17 15 2 45 45 H 0.97002 * 120.00115 * 359.97438 * 18 17 15 46 46 H 0.97001 * 120.00108 * 179.97438 * 22 21 19 47 47 H 1.09007 * 115.54704 * 34.41298 * 27 15 2 48 48 H 1.08999 * 117.49397 * 359.97438 * 28 27 15 49 49 H 1.09001 * 117.50086 * 145.01378 * 28 27 15 50 50 H 1.08998 * 117.49925 * 214.97546 * 29 27 15 51 51 H 1.09003 * 117.49572 * 359.97438 * 29 27 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 1.5360 2.2156 -0.0915 5 6 3.6416 1.1697 0.1140 6 1 3.9431 0.5644 0.9688 7 6 4.1371 2.6051 0.3041 8 6 5.6603 2.6053 0.4527 9 6 6.2938 2.0400 -0.8225 10 7 5.7139 0.7173 -1.0923 11 6 6.5080 -0.3574 -1.2692 12 7 7.8411 -0.2444 -1.1066 13 8 6.0215 -1.4288 -1.5755 14 6 4.2522 0.5881 -1.1651 15 6 2.1975 -1.2687 -0.0006 16 1 3.2685 -1.0699 0.0381 17 6 1.7876 -2.0947 1.2204 18 7 1.9912 -1.3032 2.4361 19 6 1.6907 -1.8387 3.6601 20 1 1.3039 -2.8447 3.7292 21 6 1.8831 -1.0885 4.8121 22 7 2.3540 0.1377 4.7279 23 14 1.4725 -1.8188 6.4817 24 1 2.2934 -3.0360 6.7050 25 1 1.7661 -0.8228 7.5433 26 1 0.0324 -2.1783 6.5241 27 6 1.8690 -2.0468 -1.2763 28 6 1.0469 -3.3289 -1.1300 29 6 2.5385 -3.4095 -1.4649 30 1 -0.3633 -0.0886 -1.0239 31 1 -0.3633 -0.8424 0.5886 32 1 -0.3634 0.9310 0.4352 33 1 3.6848 3.0296 1.2003 34 1 3.8567 3.2036 -0.5627 35 1 5.9428 1.9866 1.3044 36 1 6.0102 3.6253 0.6114 37 1 6.0876 2.7071 -1.6595 38 1 7.3709 1.9457 -0.6845 39 1 8.2224 0.5906 -0.7930 40 1 8.4193 -0.9979 -1.3034 41 1 3.9823 -0.4643 -1.2531 42 1 3.8796 1.1367 -2.0300 43 1 0.7359 -2.3689 1.1372 44 1 2.3958 -2.9979 1.2688 45 1 2.3389 -0.3998 2.3742 46 1 2.4881 0.6621 5.5329 47 1 1.7018 -1.4406 -2.1668 48 1 0.7405 -3.6182 -0.1248 49 1 0.3393 -3.5665 -1.9243 50 1 2.8114 -3.7002 -2.4794 51 1 3.2133 -3.7516 -0.6802 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755561663.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:57:26 Heat of formation + Delta-G solvation = -8.619616 kcal Electronic energy + Delta-G solvation = -32411.097506 eV Core-core repulsion = 28347.365702 eV Total energy + Delta-G solvation = -4063.731804 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.79064 -39.67035 -38.00939 -36.96902 -34.93161 -34.04434 -33.83370 -32.35030 -31.40613 -31.00436 -28.04654 -26.75211 -25.38956 -24.54814 -23.48044 -22.50118 -21.86901 -21.57751 -20.12518 -19.64502 -18.60265 -18.12194 -17.16255 -17.08018 -16.78188 -16.11880 -15.45834 -15.29661 -14.89244 -14.78089 -14.47810 -14.37507 -14.36869 -13.82566 -13.49853 -13.36006 -13.29918 -13.07107 -12.88996 -12.76531 -12.26799 -12.11967 -11.58741 -11.50071 -11.41265 -11.27585 -11.04766 -11.00409 -10.84038 -10.79861 -10.72891 -10.52163 -10.23807 -10.16901 -10.11985 -9.75387 -9.72789 -9.68343 -9.37778 -8.87611 -8.66204 -8.20793 -6.92891 -5.76225 -3.05167 2.63032 3.01627 3.17841 3.35985 3.43900 3.48285 3.49083 3.98351 4.04109 4.55447 4.59311 4.75858 4.84587 4.88404 4.95173 5.03686 5.11202 5.21934 5.23208 5.35949 5.40488 5.47519 5.58392 5.60552 5.71329 5.75688 5.77701 5.85778 5.87079 5.92507 5.98526 6.01496 6.06213 6.26442 6.28930 6.31752 6.32081 6.36758 6.41435 6.43244 6.56058 6.67778 6.67895 6.83567 6.94870 7.68726 7.76415 7.79936 8.41405 8.55665 8.56091 9.53057 10.09172 10.44310 11.46110 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.008970 B = 0.004673 C = 0.004149 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3120.830122 B = 5990.354224 C = 6747.025488 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.093 3.907 2 N -0.590 5.590 3 C 0.529 3.471 4 O -0.545 6.545 5 C -0.125 4.125 6 H 0.108 0.892 7 C -0.096 4.096 8 C -0.137 4.137 9 C 0.111 3.889 10 N -0.624 5.624 11 C 0.709 3.291 12 N -0.869 5.869 13 O -0.587 6.587 14 C 0.131 3.869 15 C 0.149 3.851 16 H 0.103 0.897 17 C 0.140 3.860 18 N -0.726 5.726 19 C -0.240 4.240 20 H 0.069 0.931 21 C -0.011 4.011 22 N -0.930 5.930 23 Si 0.906 3.094 24 H -0.286 1.286 25 H -0.291 1.291 26 H -0.286 1.286 27 C -0.162 4.162 28 C -0.183 4.183 29 C -0.163 4.163 30 H 0.045 0.955 31 H 0.073 0.927 32 H 0.073 0.927 33 H 0.078 0.922 34 H 0.070 0.930 35 H 0.073 0.927 36 H 0.079 0.921 37 H 0.071 0.929 38 H 0.076 0.924 39 H 0.395 0.605 40 H 0.412 0.588 41 H 0.110 0.890 42 H 0.068 0.932 43 H 0.030 0.970 44 H 0.031 0.969 45 H 0.382 0.618 46 H 0.255 0.745 47 H 0.103 0.897 48 H 0.106 0.894 49 H 0.089 0.911 50 H 0.091 0.909 51 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.677 2.171 -15.268 17.695 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.050 4.050 2 N -0.322 5.322 3 C 0.316 3.684 4 O -0.422 6.422 5 C -0.148 4.148 6 H 0.126 0.874 7 C -0.134 4.134 8 C -0.175 4.175 9 C -0.013 4.013 10 N -0.362 5.362 11 C 0.409 3.591 12 N -0.440 5.440 13 O -0.464 6.464 14 C 0.008 3.992 15 C 0.045 3.955 16 H 0.120 0.880 17 C 0.012 3.988 18 N -0.371 5.371 19 C -0.372 4.372 20 H 0.087 0.913 21 C -0.207 4.207 22 N -0.579 5.579 23 Si 0.737 3.263 24 H -0.213 1.213 25 H -0.217 1.217 26 H -0.213 1.213 27 C -0.182 4.182 28 C -0.220 4.220 29 C -0.201 4.201 30 H 0.064 0.936 31 H 0.092 0.908 32 H 0.092 0.908 33 H 0.097 0.903 34 H 0.089 0.911 35 H 0.092 0.908 36 H 0.098 0.902 37 H 0.089 0.911 38 H 0.095 0.905 39 H 0.225 0.775 40 H 0.244 0.756 41 H 0.128 0.872 42 H 0.086 0.914 43 H 0.047 0.953 44 H 0.048 0.952 45 H 0.216 0.784 46 H 0.065 0.935 47 H 0.121 0.879 48 H 0.124 0.876 49 H 0.107 0.893 50 H 0.110 0.890 51 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 7.805 1.987 -15.382 17.362 hybrid contribution 0.348 0.004 1.202 1.251 sum 8.153 1.991 -14.180 16.477 Atomic orbital electron populations 1.21513 0.79344 1.03673 1.00457 1.47647 1.07005 1.05383 1.72126 1.20248 0.89257 0.83266 0.75619 1.90646 1.70230 1.31159 1.50173 1.21742 0.92334 1.00143 1.00554 0.87433 1.21280 0.94172 0.94287 1.03676 1.21974 0.96226 1.01741 0.97608 1.21709 0.97270 0.84074 0.98217 1.47190 1.06328 1.07322 1.75405 1.15841 0.81634 0.83716 0.77929 1.43145 1.06324 1.19418 1.75073 1.90976 1.73955 1.26377 1.55115 1.21698 0.77872 1.03791 0.95837 1.21202 0.97067 0.83496 0.93768 0.87956 1.21146 0.98165 0.93703 0.85803 1.42245 1.78654 1.15723 1.00475 1.19138 1.36143 0.97951 0.83919 0.91290 1.24718 1.02001 0.96276 0.97710 1.69650 1.51249 1.09165 1.27805 0.86284 0.78066 0.77824 0.84087 1.21327 1.21731 1.21311 1.22557 1.06248 0.90446 0.98952 1.23189 0.94170 1.01217 1.03442 1.22912 0.95450 0.99031 1.02709 0.93633 0.90796 0.90830 0.90315 0.91149 0.90825 0.90245 0.91091 0.90541 0.77460 0.75584 0.87187 0.91358 0.95281 0.95179 0.78385 0.93507 0.87868 0.87598 0.89301 0.89010 0.88354 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.54 9.90 59.85 0.59 2.13 16 2 N -0.59 -10.23 2.22 -173.93 -0.39 -10.62 16 3 C 0.53 9.62 6.82 -10.98 -0.07 9.55 16 4 O -0.54 -11.24 15.56 5.55 0.09 -11.15 16 5 C -0.13 -1.96 1.82 -91.65 -0.17 -2.13 16 6 H 0.11 1.95 7.30 -51.93 -0.38 1.57 16 7 C -0.10 -1.33 4.48 -26.69 -0.12 -1.44 16 8 C -0.14 -1.42 6.08 -26.61 -0.16 -1.58 16 9 C 0.11 0.97 6.43 -3.71 -0.02 0.95 16 10 N -0.62 -7.53 2.97 -178.50 -0.53 -8.06 16 11 C 0.71 9.41 8.57 -86.92 -0.75 8.66 16 12 N -0.87 -7.55 8.77 27.64 0.24 -7.31 16 13 O -0.59 -10.11 16.61 5.29 0.09 -10.02 16 14 C 0.13 1.81 5.26 -3.71 -0.02 1.79 16 15 C 0.15 2.47 1.79 -67.93 -0.12 2.34 16 16 H 0.10 1.79 4.08 -51.93 -0.21 1.58 16 17 C 0.14 2.76 4.06 -4.05 -0.02 2.75 16 18 N -0.73 -18.07 5.43 -59.91 -0.33 -18.39 16 19 C -0.24 -6.66 9.99 -15.06 -0.15 -6.81 16 20 H 0.07 1.86 7.83 -52.48 -0.41 1.44 16 21 C -0.01 -0.31 5.50 -17.43 -0.10 -0.41 16 22 N -0.93 -27.96 13.06 55.49 0.72 -27.23 16 23 Si 0.91 22.47 29.55 -169.99 -5.02 17.44 16 24 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 25 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 26 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 27 C -0.16 -2.26 5.04 -90.62 -0.46 -2.72 16 28 C -0.18 -2.34 9.59 -26.69 -0.26 -2.60 16 29 C -0.16 -2.15 9.94 -26.69 -0.27 -2.42 16 30 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 31 H 0.07 1.25 6.46 -51.93 -0.34 0.92 16 32 H 0.07 1.34 7.35 -51.93 -0.38 0.95 16 33 H 0.08 1.25 8.14 -51.93 -0.42 0.83 16 34 H 0.07 0.93 8.05 -51.93 -0.42 0.51 16 35 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 36 H 0.08 0.66 8.14 -51.93 -0.42 0.23 16 37 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 38 H 0.08 0.46 5.57 -51.93 -0.29 0.17 16 39 H 0.39 2.33 6.32 -40.82 -0.26 2.07 16 40 H 0.41 3.07 8.93 -40.82 -0.36 2.71 16 41 H 0.11 1.68 3.91 -51.93 -0.20 1.48 16 42 H 0.07 0.89 8.14 -51.93 -0.42 0.46 16 43 H 0.03 0.58 5.34 -51.93 -0.28 0.30 16 44 H 0.03 0.61 7.44 -51.93 -0.39 0.22 16 45 H 0.38 10.10 6.95 -40.82 -0.28 9.81 16 46 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 47 H 0.10 1.38 8.14 -51.93 -0.42 0.95 16 48 H 0.11 1.47 5.80 -51.93 -0.30 1.17 16 49 H 0.09 0.99 8.14 -51.93 -0.42 0.56 16 50 H 0.09 1.09 8.14 -51.93 -0.42 0.67 16 51 H 0.10 1.41 7.66 -51.93 -0.40 1.01 16 LS Contribution 391.33 15.07 5.90 5.90 Total: -1.00 -34.77 391.33 -9.15 -43.91 By element: Atomic # 1 Polarization: 25.31 SS G_CDS: -7.84 Total: 17.48 kcal Atomic # 6 Polarization: 10.14 SS G_CDS: -2.08 Total: 8.06 kcal Atomic # 7 Polarization: -71.35 SS G_CDS: -0.28 Total: -71.62 kcal Atomic # 8 Polarization: -21.35 SS G_CDS: 0.17 Total: -21.17 kcal Atomic # 14 Polarization: 22.47 SS G_CDS: -5.02 Total: 17.44 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -34.77 -9.15 -43.91 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755561663.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.293 kcal (2) G-P(sol) polarization free energy of solvation -34.766 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.526 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.146 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.912 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.620 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds