Wall clock time and date at job start Tue Mar 31 2020 20:57:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.34774 * 120.00012 * 2 1 4 4 O 1.21288 * 120.00304 * 355.00189 * 3 2 1 5 5 C 1.50705 * 120.00171 * 174.99074 * 3 2 1 6 6 H 1.08999 * 109.52102 * 308.64388 * 5 3 2 7 7 C 1.53034 * 109.49964 * 188.55629 * 5 3 2 8 8 C 1.53045 * 109.53689 * 178.68808 * 7 5 3 9 9 C 1.53194 * 109.31167 * 61.36421 * 8 7 5 10 10 N 1.46924 * 108.77502 * 305.36516 * 9 8 7 11 11 C 1.34781 * 120.62662 * 233.63239 * 10 9 8 12 12 N 1.34774 * 120.00476 * 4.66344 * 11 10 9 13 13 O 1.21590 * 119.99431 * 184.66836 * 11 10 9 14 14 C 1.46920 * 118.74141 * 53.61302 * 10 9 8 15 15 C 1.46497 * 119.99831 * 180.02562 * 2 1 3 16 16 H 1.09004 * 109.46761 * 182.15275 * 15 2 1 17 17 C 1.53001 * 109.46936 * 302.14993 * 15 2 1 18 18 N 1.46489 * 109.47328 * 305.00133 * 17 15 2 19 19 C 1.36932 * 120.00236 * 179.97438 * 18 17 15 20 20 H 1.08005 * 120.00024 * 0.02562 * 19 18 17 21 21 C 1.38811 * 120.00429 * 180.02562 * 19 18 17 22 22 N 1.31624 * 119.99898 * 0.02562 * 21 19 18 23 23 Si 1.86803 * 120.00227 * 179.97438 * 21 19 18 24 24 H 1.48506 * 109.46626 * 60.00564 * 23 21 19 25 25 H 1.48498 * 109.46919 * 179.97438 * 23 21 19 26 26 H 1.48488 * 109.47366 * 300.00249 * 23 21 19 27 27 C 1.52999 * 109.47561 * 62.15474 * 15 2 1 28 28 C 1.53004 * 117.49892 * 248.74944 * 27 15 2 29 29 C 1.52999 * 117.50244 * 180.08686 * 27 15 2 30 30 H 1.09004 * 109.46935 * 94.94438 * 1 2 3 31 31 H 1.08994 * 109.46981 * 214.94301 * 1 2 3 32 32 H 1.09003 * 109.47219 * 334.94805 * 1 2 3 33 33 H 1.08992 * 109.46056 * 58.66911 * 7 5 3 34 34 H 1.09005 * 109.44730 * 298.69800 * 7 5 3 35 35 H 1.09000 * 109.49561 * 301.41247 * 8 7 5 36 36 H 1.08998 * 109.49720 * 181.31493 * 8 7 5 37 37 H 1.09000 * 109.58461 * 65.15723 * 9 8 7 38 38 H 1.09003 * 109.58285 * 185.57557 * 9 8 7 39 39 H 0.97007 * 119.99506 * 4.93662 * 12 11 10 40 40 H 0.96994 * 120.00349 * 184.94828 * 12 11 10 41 41 H 1.09002 * 109.58837 * 186.60509 * 14 10 9 42 42 H 1.08998 * 109.58852 * 66.17075 * 14 10 9 43 43 H 1.09003 * 109.46886 * 65.00389 * 17 15 2 44 44 H 1.08999 * 109.47009 * 185.00095 * 17 15 2 45 45 H 0.97002 * 120.00115 * 359.97438 * 18 17 15 46 46 H 0.97001 * 120.00108 * 179.97438 * 22 21 19 47 47 H 1.09007 * 115.54704 * 34.41298 * 27 15 2 48 48 H 1.08999 * 117.49397 * 359.97438 * 28 27 15 49 49 H 1.09001 * 117.50086 * 145.01378 * 28 27 15 50 50 H 1.08998 * 117.49925 * 214.97546 * 29 27 15 51 51 H 1.09003 * 117.49572 * 359.97438 * 29 27 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 1.5360 2.2156 -0.0915 5 6 3.6416 1.1697 0.1140 6 1 3.9431 0.5644 0.9688 7 6 4.1371 2.6051 0.3041 8 6 5.6603 2.6053 0.4527 9 6 6.2938 2.0400 -0.8225 10 7 5.7139 0.7173 -1.0923 11 6 6.5080 -0.3574 -1.2692 12 7 7.8411 -0.2444 -1.1066 13 8 6.0215 -1.4288 -1.5755 14 6 4.2522 0.5881 -1.1651 15 6 2.1975 -1.2687 -0.0006 16 1 3.2685 -1.0699 0.0381 17 6 1.7876 -2.0947 1.2204 18 7 1.9912 -1.3032 2.4361 19 6 1.6907 -1.8387 3.6601 20 1 1.3039 -2.8447 3.7292 21 6 1.8831 -1.0885 4.8121 22 7 2.3540 0.1377 4.7279 23 14 1.4725 -1.8188 6.4817 24 1 2.2934 -3.0360 6.7050 25 1 1.7661 -0.8228 7.5433 26 1 0.0324 -2.1783 6.5241 27 6 1.8690 -2.0468 -1.2763 28 6 1.0469 -3.3289 -1.1300 29 6 2.5385 -3.4095 -1.4649 30 1 -0.3633 -0.0886 -1.0239 31 1 -0.3633 -0.8424 0.5886 32 1 -0.3634 0.9310 0.4352 33 1 3.6848 3.0296 1.2003 34 1 3.8567 3.2036 -0.5627 35 1 5.9428 1.9866 1.3044 36 1 6.0102 3.6253 0.6114 37 1 6.0876 2.7071 -1.6595 38 1 7.3709 1.9457 -0.6845 39 1 8.2224 0.5906 -0.7930 40 1 8.4193 -0.9979 -1.3034 41 1 3.9823 -0.4643 -1.2531 42 1 3.8796 1.1367 -2.0300 43 1 0.7359 -2.3689 1.1372 44 1 2.3958 -2.9979 1.2688 45 1 2.3389 -0.3998 2.3742 46 1 2.4881 0.6621 5.5329 47 1 1.7018 -1.4406 -2.1668 48 1 0.7405 -3.6182 -0.1248 49 1 0.3393 -3.5665 -1.9243 50 1 2.8114 -3.7002 -2.4794 51 1 3.2133 -3.7516 -0.6802 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755561663.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:57:25 Heat of formation + Delta-G solvation = -33.478589 kcal Electronic energy + Delta-G solvation = -32412.175472 eV Core-core repulsion = 28347.365702 eV Total energy + Delta-G solvation = -4064.809770 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 1.51 seconds Orbital eigenvalues (eV) -41.99183 -40.85076 -39.30703 -38.09214 -36.44575 -35.62143 -35.03411 -33.34709 -32.99322 -32.44388 -29.63805 -28.13408 -26.45703 -26.21064 -24.72521 -24.01924 -23.09749 -22.62383 -21.43233 -20.65577 -19.77697 -19.39405 -18.95419 -18.35346 -17.86148 -17.50810 -16.72041 -16.63171 -16.28256 -16.02892 -15.83186 -15.71709 -15.34938 -15.21174 -15.00483 -14.88253 -14.58130 -14.35088 -14.12788 -14.02669 -13.58991 -13.53627 -13.08404 -12.97076 -12.87926 -12.71542 -12.53129 -12.40659 -12.24067 -12.05080 -12.03053 -11.92469 -11.78368 -11.65448 -11.33733 -11.23952 -10.99129 -10.86504 -10.77115 -10.64709 -9.68837 -9.58553 -9.01388 -7.95398 -5.24508 1.44802 1.47065 1.47667 1.53533 1.76490 2.02929 2.17068 2.53696 2.92121 3.21385 3.37447 3.39959 3.63848 3.66655 3.77277 3.88042 4.00731 4.04644 4.08007 4.12775 4.17560 4.23799 4.29212 4.45857 4.51623 4.54077 4.57175 4.70358 4.72291 4.73990 4.81355 4.85625 4.88209 4.96898 5.01840 5.06335 5.09728 5.17375 5.25652 5.34158 5.35967 5.40871 5.46526 5.55191 5.84662 6.05963 6.24642 6.36165 6.92990 7.10800 7.31871 7.64059 8.05380 8.29631 9.27263 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.008970 B = 0.004673 C = 0.004149 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3120.830122 B = 5990.354224 C = 6747.025488 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.094 3.906 2 N -0.591 5.591 3 C 0.520 3.480 4 O -0.575 6.575 5 C -0.115 4.115 6 H 0.076 0.924 7 C -0.095 4.095 8 C -0.130 4.130 9 C 0.109 3.891 10 N -0.625 5.625 11 C 0.700 3.300 12 N -0.848 5.848 13 O -0.632 6.632 14 C 0.141 3.859 15 C 0.161 3.839 16 H 0.093 0.907 17 C 0.141 3.859 18 N -0.737 5.737 19 C -0.245 4.245 20 H 0.076 0.924 21 C -0.071 4.071 22 N -0.965 5.965 23 Si 0.972 3.028 24 H -0.278 1.278 25 H -0.297 1.297 26 H -0.279 1.279 27 C -0.167 4.167 28 C -0.171 4.171 29 C -0.159 4.159 30 H 0.075 0.925 31 H 0.068 0.932 32 H 0.052 0.948 33 H 0.047 0.953 34 H 0.078 0.922 35 H 0.055 0.945 36 H 0.108 0.892 37 H 0.093 0.907 38 H 0.111 0.889 39 H 0.411 0.589 40 H 0.420 0.580 41 H 0.095 0.905 42 H 0.080 0.920 43 H 0.037 0.963 44 H 0.030 0.970 45 H 0.371 0.629 46 H 0.250 0.750 47 H 0.116 0.884 48 H 0.093 0.907 49 H 0.114 0.886 50 H 0.110 0.890 51 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.681 1.725 -16.759 19.431 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.049 4.049 2 N -0.321 5.321 3 C 0.308 3.692 4 O -0.455 6.455 5 C -0.138 4.138 6 H 0.094 0.906 7 C -0.133 4.133 8 C -0.168 4.168 9 C -0.013 4.013 10 N -0.362 5.362 11 C 0.400 3.600 12 N -0.419 5.419 13 O -0.513 6.513 14 C 0.016 3.984 15 C 0.057 3.943 16 H 0.110 0.890 17 C 0.014 3.986 18 N -0.380 5.380 19 C -0.376 4.376 20 H 0.094 0.906 21 C -0.264 4.264 22 N -0.616 5.616 23 Si 0.801 3.199 24 H -0.204 1.204 25 H -0.223 1.223 26 H -0.205 1.205 27 C -0.186 4.186 28 C -0.208 4.208 29 C -0.197 4.197 30 H 0.094 0.906 31 H 0.087 0.913 32 H 0.071 0.929 33 H 0.066 0.934 34 H 0.097 0.903 35 H 0.074 0.926 36 H 0.127 0.873 37 H 0.111 0.889 38 H 0.129 0.871 39 H 0.244 0.756 40 H 0.254 0.746 41 H 0.113 0.887 42 H 0.098 0.902 43 H 0.055 0.945 44 H 0.048 0.952 45 H 0.203 0.797 46 H 0.058 0.942 47 H 0.134 0.866 48 H 0.111 0.889 49 H 0.132 0.868 50 H 0.128 0.872 51 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 8.845 1.518 -16.886 19.123 hybrid contribution 0.029 0.115 1.655 1.660 sum 8.874 1.633 -15.231 17.703 Atomic orbital electron populations 1.21529 0.79045 1.02267 1.02019 1.47750 1.07375 1.05520 1.71490 1.20750 0.90389 0.83007 0.75020 1.90617 1.71024 1.32077 1.51739 1.21646 0.90729 1.01003 1.00382 0.90589 1.21286 0.96697 0.92831 1.02488 1.21949 0.93504 1.03348 0.98010 1.21985 0.98902 0.82540 0.97871 1.47214 1.05486 1.08453 1.75068 1.16102 0.82821 0.83239 0.77847 1.42930 1.04703 1.20539 1.73758 1.90940 1.75058 1.28125 1.57208 1.21473 0.79259 1.02801 0.94842 1.21047 0.96389 0.82995 0.93851 0.88959 1.21282 0.98417 0.93564 0.85323 1.42415 1.78493 1.15655 1.01459 1.19548 1.34864 0.98119 0.85112 0.90649 1.25519 1.02796 0.96792 1.01265 1.69822 1.53032 1.10531 1.28202 0.85246 0.78072 0.77023 0.79599 1.20399 1.22285 1.20526 1.22442 1.07706 0.90754 0.97697 1.23219 0.94405 0.99553 1.03622 1.22923 0.95511 0.98000 1.03231 0.90632 0.91322 0.92887 0.93412 0.90294 0.92605 0.87331 0.88923 0.87063 0.75572 0.74648 0.88661 0.90175 0.94527 0.95223 0.79669 0.94159 0.86586 0.88866 0.86759 0.87195 0.89935 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 3.14 9.90 127.77 1.27 4.41 16 2 N -0.59 -20.95 2.22 -822.58 -1.83 -22.77 16 3 C 0.52 19.63 6.82 87.66 0.60 20.23 16 4 O -0.57 -24.59 15.56 -3.06 -0.05 -24.63 16 5 C -0.12 -3.74 1.82 -11.46 -0.02 -3.76 16 6 H 0.08 2.96 7.30 -2.39 -0.02 2.94 16 7 C -0.09 -2.67 4.48 30.62 0.14 -2.53 16 8 C -0.13 -2.53 6.08 30.67 0.19 -2.34 16 9 C 0.11 1.61 6.43 86.36 0.56 2.16 16 10 N -0.62 -14.26 2.97 -836.89 -2.49 -16.75 16 11 C 0.70 17.72 8.57 179.05 1.54 19.26 16 12 N -0.85 -12.81 8.77 -184.74 -1.62 -14.43 16 13 O -0.63 -21.62 16.61 -4.00 -0.07 -21.68 16 14 C 0.14 3.85 5.26 86.37 0.45 4.31 16 15 C 0.16 5.41 1.79 44.99 0.08 5.49 16 16 H 0.09 3.35 4.08 -2.39 -0.01 3.34 16 17 C 0.14 5.66 4.06 86.38 0.35 6.01 16 18 N -0.74 -37.74 5.43 -343.47 -1.87 -39.60 16 19 C -0.24 -13.75 9.99 84.03 0.84 -12.91 16 20 H 0.08 4.05 7.83 -2.91 -0.02 4.03 16 21 C -0.07 -4.13 5.50 84.86 0.47 -3.66 16 22 N -0.97 -59.76 13.06 21.65 0.28 -59.48 16 23 Si 0.97 46.74 29.55 68.60 2.03 48.77 16 24 H -0.28 -12.86 7.11 99.48 0.71 -12.15 16 25 H -0.30 -14.40 7.11 99.48 0.71 -13.70 16 26 H -0.28 -12.97 7.11 99.48 0.71 -12.27 16 27 C -0.17 -4.45 5.04 -10.79 -0.05 -4.50 16 28 C -0.17 -4.05 9.59 30.62 0.29 -3.76 16 29 C -0.16 -3.98 9.94 30.62 0.30 -3.67 16 30 H 0.08 2.06 8.14 -2.38 -0.02 2.04 16 31 H 0.07 2.34 6.46 -2.39 -0.02 2.33 16 32 H 0.05 1.99 7.35 -2.39 -0.02 1.97 16 33 H 0.05 1.61 8.14 -2.39 -0.02 1.59 16 34 H 0.08 2.06 8.05 -2.38 -0.02 2.04 16 35 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 36 H 0.11 1.52 8.14 -2.39 -0.02 1.50 16 37 H 0.09 1.07 8.14 -2.39 -0.02 1.05 16 38 H 0.11 0.87 5.57 -2.39 -0.01 0.86 16 39 H 0.41 3.50 6.32 -92.70 -0.59 2.91 16 40 H 0.42 5.38 8.93 -92.71 -0.83 4.55 16 41 H 0.10 2.94 3.91 -2.39 -0.01 2.93 16 42 H 0.08 2.00 8.14 -2.39 -0.02 1.99 16 43 H 0.04 1.44 5.34 -2.39 -0.01 1.43 16 44 H 0.03 1.21 7.44 -2.39 -0.02 1.20 16 45 H 0.37 20.51 6.95 -92.71 -0.64 19.86 16 46 H 0.25 15.08 8.31 -92.71 -0.77 14.31 16 47 H 0.12 2.87 8.14 -2.38 -0.02 2.85 16 48 H 0.09 2.47 5.80 -2.39 -0.01 2.45 16 49 H 0.11 2.17 8.14 -2.39 -0.02 2.15 16 50 H 0.11 2.37 8.14 -2.39 -0.02 2.35 16 51 H 0.08 2.34 7.66 -2.39 -0.02 2.32 16 Total: -1.00 -78.01 391.33 0.32 -77.70 By element: Atomic # 1 Polarization: 49.23 SS G_CDS: -1.07 Total: 48.16 kcal Atomic # 6 Polarization: 17.74 SS G_CDS: 6.99 Total: 24.73 kcal Atomic # 7 Polarization: -145.52 SS G_CDS: -7.52 Total: -153.04 kcal Atomic # 8 Polarization: -46.20 SS G_CDS: -0.11 Total: -46.32 kcal Atomic # 14 Polarization: 46.74 SS G_CDS: 2.03 Total: 48.77 kcal Total: -78.01 0.32 -77.70 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755561663.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.218 kcal (2) G-P(sol) polarization free energy of solvation -78.014 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.796 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.317 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.697 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.479 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.52 seconds