Wall clock time and date at job start Tue Mar 31 2020 20:57:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46510 * 1 3 3 C 1.34769 * 119.99516 * 2 1 4 4 O 1.21286 * 119.99860 * 180.02562 * 3 2 1 5 5 C 1.50707 * 120.00299 * 0.02562 * 3 2 1 6 6 H 1.08990 * 109.70332 * 349.26760 * 5 3 2 7 7 C 1.53187 * 109.58362 * 109.62552 * 5 3 2 8 8 C 1.53045 * 109.31298 * 174.42216 * 7 5 3 9 9 C 1.53041 * 109.53692 * 298.63431 * 8 7 5 10 10 C 1.53190 * 109.33950 * 61.34518 * 9 8 7 11 11 N 1.46926 * 109.58283 * 228.91167 * 5 3 2 12 12 C 1.34775 * 120.63465 * 6.60230 * 11 5 3 13 13 N 1.34776 * 119.99780 * 185.32736 * 12 11 5 14 14 O 1.21580 * 119.99804 * 5.32934 * 12 11 5 15 15 C 1.46491 * 119.99871 * 180.02562 * 2 1 3 16 16 H 1.09002 * 109.47218 * 179.97438 * 15 2 1 17 17 C 1.52995 * 109.47387 * 299.99872 * 15 2 1 18 18 N 1.46500 * 109.47106 * 305.00149 * 17 15 2 19 19 C 1.36943 * 120.00262 * 180.02562 * 18 17 15 20 20 H 1.08002 * 119.99453 * 359.97438 * 19 18 17 21 21 C 1.38811 * 119.99853 * 179.97438 * 19 18 17 22 22 N 1.31619 * 119.99755 * 179.97438 * 21 19 18 23 23 Si 1.86795 * 120.00157 * 359.97438 * 21 19 18 24 24 H 1.48500 * 109.47050 * 90.00102 * 23 21 19 25 25 H 1.48499 * 109.46859 * 209.99767 * 23 21 19 26 26 H 1.48494 * 109.47294 * 330.00119 * 23 21 19 27 27 C 1.53003 * 109.47456 * 59.99914 * 15 2 1 28 28 C 1.52995 * 117.50061 * 248.62244 * 27 15 2 29 29 C 1.52999 * 117.50148 * 179.97438 * 27 15 2 30 30 H 1.08995 * 109.47011 * 89.99894 * 1 2 3 31 31 H 1.09004 * 109.46666 * 210.00175 * 1 2 3 32 32 H 1.09002 * 109.46788 * 329.99761 * 1 2 3 33 33 H 1.09003 * 109.50491 * 54.47063 * 7 5 3 34 34 H 1.09005 * 109.52568 * 294.38251 * 7 5 3 35 35 H 1.08995 * 109.46631 * 178.60925 * 8 7 5 36 36 H 1.08999 * 109.44698 * 58.64189 * 8 7 5 37 37 H 1.08997 * 109.49525 * 181.31174 * 9 8 7 38 38 H 1.08997 * 109.49400 * 301.37670 * 9 8 7 39 39 H 1.09001 * 109.59001 * 65.17303 * 10 9 8 40 40 H 1.09005 * 109.58728 * 185.59687 * 10 9 8 41 41 H 0.96994 * 120.00702 * 4.92677 * 13 12 11 42 42 H 0.96999 * 119.99669 * 184.92496 * 13 12 11 43 43 H 1.08998 * 109.47486 * 65.00132 * 17 15 2 44 44 H 1.09005 * 109.47641 * 185.00468 * 17 15 2 45 45 H 0.97001 * 120.00008 * 359.97438 * 18 17 15 46 46 H 0.96996 * 120.00420 * 180.02562 * 22 21 19 47 47 H 1.09004 * 115.54738 * 34.32817 * 27 15 2 48 48 H 1.08999 * 117.49868 * 359.97438 * 28 27 15 49 49 H 1.08998 * 117.50268 * 145.01788 * 28 27 15 50 50 H 1.09002 * 117.49772 * 214.98190 * 29 27 15 51 51 H 1.09000 * 117.49887 * 0.02562 * 29 27 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1388 1.1672 0.0000 4 8 3.3517 1.1673 -0.0005 5 6 1.3853 2.4723 0.0006 6 1 0.3284 2.2865 -0.1901 7 6 1.5488 3.1591 1.3601 8 6 0.8999 4.5442 1.3088 9 6 1.5994 5.3982 0.2490 10 6 1.4372 4.7371 -1.1234 11 7 1.9265 3.3539 -1.0428 12 6 2.8548 2.9028 -1.9095 13 7 3.4209 3.7499 -2.7918 14 8 3.1813 1.7318 -1.8955 15 6 2.1975 -1.2687 -0.0006 16 1 3.2692 -1.0695 -0.0009 17 6 1.8280 -2.0715 1.2483 18 7 2.0708 -1.2574 2.4418 19 6 1.8114 -1.7701 3.6848 20 1 1.4275 -2.7746 3.7852 21 6 2.0420 -0.9988 4.8157 22 7 1.7923 -1.4915 6.0103 23 14 2.7067 0.7382 4.6419 24 1 1.5746 1.6921 4.5259 25 1 3.5204 1.0786 5.8366 26 1 3.5535 0.8248 3.4251 27 6 1.8279 -2.0705 -1.2502 28 6 1.0141 -3.3509 -1.0528 29 6 2.4933 -3.4356 -1.4361 30 1 -0.3633 0.0000 -1.0276 31 1 -0.3633 -0.8900 0.5139 32 1 -0.3633 0.8900 0.5139 33 1 2.6093 3.2625 1.5903 34 1 1.0658 2.5594 2.1316 35 1 0.9931 5.0252 2.2824 36 1 -0.1550 4.4415 1.0541 37 1 1.1521 6.3920 0.2292 38 1 2.6592 5.4810 0.4900 39 1 0.3846 4.7360 -1.4064 40 1 2.0165 5.2875 -1.8649 41 1 3.2140 4.6968 -2.7564 42 1 4.0354 3.4125 -3.4622 43 1 0.7743 -2.3470 1.2046 44 1 2.4378 -2.9739 1.2939 45 1 2.4159 -0.3554 2.3516 46 1 1.9530 -0.9525 6.8006 47 1 1.6302 -1.4810 -2.1455 48 1 0.7423 -3.6223 -0.0328 49 1 0.2806 -3.6041 -1.8183 50 1 2.7327 -3.7444 -2.4537 51 1 3.1941 -3.7627 -0.6680 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755568315.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:57:12 Heat of formation + Delta-G solvation = 17.004772 kcal Electronic energy + Delta-G solvation = -32708.068658 eV Core-core repulsion = 28645.448011 eV Total energy + Delta-G solvation = -4062.620647 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 1.31 seconds Orbital eigenvalues (eV) -41.03001 -39.23331 -37.63414 -37.20237 -34.90317 -34.01409 -33.84845 -32.50853 -31.53771 -31.03636 -28.46838 -26.44885 -25.77057 -24.40702 -23.63835 -22.31683 -21.66392 -21.56451 -20.56509 -19.43014 -18.82889 -17.92162 -17.35034 -17.16145 -16.60661 -16.11771 -15.51200 -15.18911 -15.07273 -14.81131 -14.52201 -14.29131 -14.21219 -13.82509 -13.63673 -13.54087 -13.45905 -13.10588 -12.91168 -12.56227 -12.22720 -12.19526 -12.03369 -11.57526 -11.49794 -11.43115 -11.30435 -11.11911 -11.00175 -10.91398 -10.74427 -10.63205 -10.22391 -10.08126 -9.72474 -9.68478 -9.56576 -9.46808 -9.03541 -8.81138 -8.69982 -7.94913 -7.14332 -5.71575 -3.05098 2.48228 3.13629 3.30680 3.38257 3.48974 3.52636 3.54372 4.02057 4.11417 4.49455 4.55390 4.65158 4.65781 4.83589 4.91541 4.96124 4.99535 5.17039 5.19216 5.22720 5.25267 5.37936 5.47247 5.51888 5.57685 5.61339 5.67642 5.67867 5.79924 5.85638 5.86965 5.92067 5.94588 6.06273 6.08006 6.20254 6.23599 6.28001 6.36896 6.46901 6.53395 6.63551 6.74981 6.89183 7.09994 7.81154 7.88260 8.05575 8.47888 8.61053 8.88146 9.28516 10.01703 10.23291 11.46919 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.009368 B = 0.005787 C = 0.003999 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2988.050597 B = 4837.173093 C = 7000.491252 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.081 3.919 2 N -0.598 5.598 3 C 0.528 3.472 4 O -0.499 6.499 5 C 0.145 3.855 6 H 0.092 0.908 7 C -0.133 4.133 8 C -0.116 4.116 9 C -0.138 4.138 10 C 0.117 3.883 11 N -0.620 5.620 12 C 0.696 3.304 13 N -0.872 5.872 14 O -0.544 6.544 15 C 0.167 3.833 16 H 0.102 0.898 17 C 0.146 3.854 18 N -0.751 5.751 19 C -0.238 4.238 20 H 0.090 0.910 21 C 0.006 3.994 22 N -0.935 5.935 23 Si 0.872 3.128 24 H -0.283 1.283 25 H -0.292 1.292 26 H -0.271 1.271 27 C -0.151 4.151 28 C -0.185 4.185 29 C -0.174 4.174 30 H 0.046 0.954 31 H 0.080 0.920 32 H 0.064 0.936 33 H 0.077 0.923 34 H 0.084 0.916 35 H 0.072 0.928 36 H 0.068 0.932 37 H 0.076 0.924 38 H 0.069 0.931 39 H 0.071 0.929 40 H 0.078 0.922 41 H 0.390 0.610 42 H 0.411 0.589 43 H 0.034 0.966 44 H 0.034 0.966 45 H 0.363 0.637 46 H 0.258 0.742 47 H 0.102 0.898 48 H 0.107 0.893 49 H 0.087 0.913 50 H 0.089 0.911 51 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.964 13.788 -19.647 24.510 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 N -0.332 5.332 3 C 0.314 3.686 4 O -0.372 6.372 5 C 0.037 3.963 6 H 0.110 0.890 7 C -0.171 4.171 8 C -0.153 4.153 9 C -0.177 4.177 10 C -0.007 4.007 11 N -0.361 5.361 12 C 0.396 3.604 13 N -0.443 5.443 14 O -0.417 6.417 15 C 0.063 3.937 16 H 0.120 0.880 17 C 0.018 3.982 18 N -0.396 5.396 19 C -0.368 4.368 20 H 0.108 0.892 21 C -0.190 4.190 22 N -0.584 5.584 23 Si 0.702 3.298 24 H -0.210 1.210 25 H -0.218 1.218 26 H -0.197 1.197 27 C -0.171 4.171 28 C -0.222 4.222 29 C -0.212 4.212 30 H 0.065 0.935 31 H 0.099 0.901 32 H 0.083 0.917 33 H 0.096 0.904 34 H 0.103 0.897 35 H 0.090 0.910 36 H 0.087 0.913 37 H 0.095 0.905 38 H 0.088 0.912 39 H 0.089 0.911 40 H 0.096 0.904 41 H 0.220 0.780 42 H 0.243 0.757 43 H 0.052 0.948 44 H 0.052 0.948 45 H 0.196 0.804 46 H 0.068 0.932 47 H 0.120 0.880 48 H 0.125 0.875 49 H 0.106 0.894 50 H 0.108 0.892 51 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -4.242 12.793 -19.328 23.563 hybrid contribution 0.526 1.728 -0.249 1.824 sum -3.715 14.522 -19.577 24.656 Atomic orbital electron populations 1.21716 0.80385 1.03495 1.00607 1.47420 1.06299 1.05224 1.74258 1.19641 0.87978 0.84339 0.76649 1.90701 1.13770 1.86321 1.46405 1.21114 0.97819 0.89043 0.88286 0.89013 1.21948 1.03255 0.96704 0.95217 1.21485 0.99597 0.94852 0.99404 1.21970 1.01986 0.98926 0.94780 1.21636 0.99793 0.81487 0.97760 1.47003 1.43744 1.12486 1.32902 1.15977 0.79238 0.85417 0.79768 1.43181 1.52726 1.10626 1.37771 1.91200 1.64579 1.15121 1.70822 1.20734 0.97979 0.82261 0.92696 0.88003 1.21122 0.98272 0.93450 0.85316 1.42662 1.79875 1.15007 1.02071 1.19059 1.36012 0.99877 0.81816 0.89245 1.24602 1.01509 0.97742 0.95109 1.69695 1.54989 1.36848 0.96846 0.86707 0.79246 0.86558 0.77313 1.20977 1.21808 1.19721 1.22526 1.05134 0.89825 0.99610 1.23193 0.93984 1.01735 1.03290 1.22934 0.96053 0.99910 1.02307 0.93496 0.90093 0.91748 0.90436 0.89717 0.90954 0.91350 0.90498 0.91238 0.91094 0.90363 0.78031 0.75732 0.94836 0.94784 0.80419 0.93192 0.87957 0.87506 0.89407 0.89215 0.88456 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.14 9.31 59.85 0.56 1.69 16 2 N -0.60 -10.54 2.24 -173.93 -0.39 -10.93 16 3 C 0.53 10.02 4.54 -10.99 -0.05 9.97 16 4 O -0.50 -11.57 12.98 -20.19 -0.26 -11.83 16 5 C 0.14 2.11 2.77 -68.75 -0.19 1.92 16 6 H 0.09 1.13 5.70 -51.93 -0.30 0.83 16 7 C -0.13 -1.91 5.35 -26.61 -0.14 -2.06 16 8 C -0.12 -1.15 5.88 -26.69 -0.16 -1.31 16 9 C -0.14 -1.09 6.08 -26.61 -0.16 -1.25 16 10 C 0.12 0.91 6.43 -3.70 -0.02 0.88 16 11 N -0.62 -7.81 2.97 -172.22 -0.51 -8.32 16 12 C 0.70 10.26 8.18 -86.92 -0.71 9.55 16 13 N -0.87 -8.40 8.77 27.63 0.24 -8.15 16 14 O -0.54 -10.73 12.37 -20.45 -0.25 -10.99 16 15 C 0.17 3.10 2.59 -67.94 -0.18 2.93 16 16 H 0.10 2.24 6.90 -51.93 -0.36 1.88 16 17 C 0.15 3.00 4.13 -4.04 -0.02 2.98 16 18 N -0.75 -18.91 5.24 -59.91 -0.31 -19.22 16 19 C -0.24 -6.92 10.47 -15.06 -0.16 -7.08 16 20 H 0.09 2.75 8.06 -52.49 -0.42 2.33 16 21 C 0.01 0.18 5.50 -17.43 -0.10 0.08 16 22 N -0.94 -29.96 13.97 55.49 0.78 -29.18 16 23 Si 0.87 23.14 27.74 -169.99 -4.71 18.42 16 24 H -0.28 -7.10 7.11 56.52 0.40 -6.70 16 25 H -0.29 -7.84 7.11 56.52 0.40 -7.44 16 26 H -0.27 -7.31 6.52 56.52 0.37 -6.94 16 27 C -0.15 -2.31 5.49 -90.62 -0.50 -2.80 16 28 C -0.19 -2.45 9.58 -26.71 -0.26 -2.70 16 29 C -0.17 -2.39 9.94 -26.71 -0.27 -2.65 16 30 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 31 H 0.08 1.17 6.53 -51.93 -0.34 0.83 16 32 H 0.06 0.80 6.14 -51.93 -0.32 0.48 16 33 H 0.08 1.31 8.14 -51.93 -0.42 0.89 16 34 H 0.08 1.35 8.14 -51.93 -0.42 0.93 16 35 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 36 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 37 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 38 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 39 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 40 H 0.08 0.42 5.58 -51.93 -0.29 0.13 16 41 H 0.39 2.44 6.32 -40.82 -0.26 2.18 16 42 H 0.41 3.58 8.93 -40.82 -0.36 3.22 16 43 H 0.03 0.66 5.35 -51.93 -0.28 0.38 16 44 H 0.03 0.72 7.44 -51.93 -0.39 0.33 16 45 H 0.36 9.42 4.93 -40.82 -0.20 9.21 16 46 H 0.26 7.89 8.31 -40.82 -0.34 7.55 16 47 H 0.10 1.59 8.14 -51.93 -0.42 1.17 16 48 H 0.11 1.52 5.80 -51.93 -0.30 1.22 16 49 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 50 H 0.09 1.08 8.14 -51.93 -0.42 0.65 16 51 H 0.10 1.40 7.66 -51.93 -0.40 1.00 16 LS Contribution 386.48 15.07 5.82 5.82 Total: -1.00 -38.75 386.48 -9.98 -48.73 By element: Atomic # 1 Polarization: 23.53 SS G_CDS: -8.03 Total: 15.50 kcal Atomic # 6 Polarization: 12.49 SS G_CDS: -2.34 Total: 10.14 kcal Atomic # 7 Polarization: -75.61 SS G_CDS: -0.20 Total: -75.81 kcal Atomic # 8 Polarization: -22.30 SS G_CDS: -0.51 Total: -22.82 kcal Atomic # 14 Polarization: 23.14 SS G_CDS: -4.71 Total: 18.42 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -38.75 -9.98 -48.73 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755568315.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.738 kcal (2) G-P(sol) polarization free energy of solvation -38.755 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.984 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.979 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.734 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.005 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.31 seconds