Wall clock time and date at job start Tue Mar 31 2020 20:57:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46510 * 1 3 3 C 1.34769 * 119.99516 * 2 1 4 4 O 1.21286 * 119.99860 * 180.02562 * 3 2 1 5 5 C 1.50707 * 120.00299 * 0.02562 * 3 2 1 6 6 H 1.08990 * 109.70332 * 349.26760 * 5 3 2 7 7 C 1.53187 * 109.58362 * 109.62552 * 5 3 2 8 8 C 1.53045 * 109.31298 * 174.42216 * 7 5 3 9 9 C 1.53041 * 109.53692 * 298.63431 * 8 7 5 10 10 C 1.53190 * 109.33950 * 61.34518 * 9 8 7 11 11 N 1.46926 * 109.58283 * 228.91167 * 5 3 2 12 12 C 1.34775 * 120.63465 * 6.60230 * 11 5 3 13 13 N 1.34776 * 119.99780 * 185.32736 * 12 11 5 14 14 O 1.21580 * 119.99804 * 5.32934 * 12 11 5 15 15 C 1.46491 * 119.99871 * 180.02562 * 2 1 3 16 16 H 1.09002 * 109.47218 * 179.97438 * 15 2 1 17 17 C 1.52995 * 109.47387 * 299.99872 * 15 2 1 18 18 N 1.46500 * 109.47106 * 305.00149 * 17 15 2 19 19 C 1.36943 * 120.00262 * 180.02562 * 18 17 15 20 20 H 1.08002 * 119.99453 * 359.97438 * 19 18 17 21 21 C 1.38811 * 119.99853 * 179.97438 * 19 18 17 22 22 N 1.31619 * 119.99755 * 179.97438 * 21 19 18 23 23 Si 1.86795 * 120.00157 * 359.97438 * 21 19 18 24 24 H 1.48500 * 109.47050 * 90.00102 * 23 21 19 25 25 H 1.48499 * 109.46859 * 209.99767 * 23 21 19 26 26 H 1.48494 * 109.47294 * 330.00119 * 23 21 19 27 27 C 1.53003 * 109.47456 * 59.99914 * 15 2 1 28 28 C 1.52995 * 117.50061 * 248.62244 * 27 15 2 29 29 C 1.52999 * 117.50148 * 179.97438 * 27 15 2 30 30 H 1.08995 * 109.47011 * 89.99894 * 1 2 3 31 31 H 1.09004 * 109.46666 * 210.00175 * 1 2 3 32 32 H 1.09002 * 109.46788 * 329.99761 * 1 2 3 33 33 H 1.09003 * 109.50491 * 54.47063 * 7 5 3 34 34 H 1.09005 * 109.52568 * 294.38251 * 7 5 3 35 35 H 1.08995 * 109.46631 * 178.60925 * 8 7 5 36 36 H 1.08999 * 109.44698 * 58.64189 * 8 7 5 37 37 H 1.08997 * 109.49525 * 181.31174 * 9 8 7 38 38 H 1.08997 * 109.49400 * 301.37670 * 9 8 7 39 39 H 1.09001 * 109.59001 * 65.17303 * 10 9 8 40 40 H 1.09005 * 109.58728 * 185.59687 * 10 9 8 41 41 H 0.96994 * 120.00702 * 4.92677 * 13 12 11 42 42 H 0.96999 * 119.99669 * 184.92496 * 13 12 11 43 43 H 1.08998 * 109.47486 * 65.00132 * 17 15 2 44 44 H 1.09005 * 109.47641 * 185.00468 * 17 15 2 45 45 H 0.97001 * 120.00008 * 359.97438 * 18 17 15 46 46 H 0.96996 * 120.00420 * 180.02562 * 22 21 19 47 47 H 1.09004 * 115.54738 * 34.32817 * 27 15 2 48 48 H 1.08999 * 117.49868 * 359.97438 * 28 27 15 49 49 H 1.08998 * 117.50268 * 145.01788 * 28 27 15 50 50 H 1.09002 * 117.49772 * 214.98190 * 29 27 15 51 51 H 1.09000 * 117.49887 * 0.02562 * 29 27 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1388 1.1672 0.0000 4 8 3.3517 1.1673 -0.0005 5 6 1.3853 2.4723 0.0006 6 1 0.3284 2.2865 -0.1901 7 6 1.5488 3.1591 1.3601 8 6 0.8999 4.5442 1.3088 9 6 1.5994 5.3982 0.2490 10 6 1.4372 4.7371 -1.1234 11 7 1.9265 3.3539 -1.0428 12 6 2.8548 2.9028 -1.9095 13 7 3.4209 3.7499 -2.7918 14 8 3.1813 1.7318 -1.8955 15 6 2.1975 -1.2687 -0.0006 16 1 3.2692 -1.0695 -0.0009 17 6 1.8280 -2.0715 1.2483 18 7 2.0708 -1.2574 2.4418 19 6 1.8114 -1.7701 3.6848 20 1 1.4275 -2.7746 3.7852 21 6 2.0420 -0.9988 4.8157 22 7 1.7923 -1.4915 6.0103 23 14 2.7067 0.7382 4.6419 24 1 1.5746 1.6921 4.5259 25 1 3.5204 1.0786 5.8366 26 1 3.5535 0.8248 3.4251 27 6 1.8279 -2.0705 -1.2502 28 6 1.0141 -3.3509 -1.0528 29 6 2.4933 -3.4356 -1.4361 30 1 -0.3633 0.0000 -1.0276 31 1 -0.3633 -0.8900 0.5139 32 1 -0.3633 0.8900 0.5139 33 1 2.6093 3.2625 1.5903 34 1 1.0658 2.5594 2.1316 35 1 0.9931 5.0252 2.2824 36 1 -0.1550 4.4415 1.0541 37 1 1.1521 6.3920 0.2292 38 1 2.6592 5.4810 0.4900 39 1 0.3846 4.7360 -1.4064 40 1 2.0165 5.2875 -1.8649 41 1 3.2140 4.6968 -2.7564 42 1 4.0354 3.4125 -3.4622 43 1 0.7743 -2.3470 1.2046 44 1 2.4378 -2.9739 1.2939 45 1 2.4159 -0.3554 2.3516 46 1 1.9530 -0.9525 6.8006 47 1 1.6302 -1.4810 -2.1455 48 1 0.7423 -3.6223 -0.0328 49 1 0.2806 -3.6041 -1.8183 50 1 2.7327 -3.7444 -2.4537 51 1 3.1941 -3.7627 -0.6680 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755568315.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:57:11 Heat of formation + Delta-G solvation = -11.344303 kcal Electronic energy + Delta-G solvation = -32709.297966 eV Core-core repulsion = 28645.448011 eV Total energy + Delta-G solvation = -4063.849955 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -42.16061 -40.50609 -38.84129 -38.28600 -36.51830 -35.74904 -34.90279 -33.55054 -33.30125 -32.24301 -30.04606 -27.73989 -26.91795 -25.84296 -24.72394 -23.84371 -23.09564 -22.59906 -21.61003 -20.57255 -20.28867 -19.34851 -18.98959 -18.25945 -17.69830 -17.52684 -16.76908 -16.55607 -16.28626 -16.10300 -15.81088 -15.43658 -15.37065 -15.31161 -15.04162 -14.77988 -14.71139 -14.37471 -14.26523 -14.06392 -13.60050 -13.48343 -13.37493 -13.07948 -13.04976 -12.79527 -12.51768 -12.35859 -12.25406 -12.17985 -12.07330 -11.88584 -11.81062 -11.70793 -11.37698 -11.05837 -10.94094 -10.81839 -10.64095 -10.31542 -9.68259 -9.34657 -9.28867 -8.08399 -5.39217 1.22536 1.29639 1.38701 1.46216 1.92493 2.07467 2.38700 2.39603 2.92346 3.22619 3.22818 3.44426 3.56009 3.73870 3.78902 3.87428 3.97783 4.01015 4.03248 4.07270 4.13020 4.15817 4.30092 4.39602 4.41531 4.55942 4.59211 4.70616 4.74702 4.80480 4.80886 4.83858 4.94372 4.98850 5.02065 5.03254 5.10463 5.14104 5.21881 5.30411 5.36458 5.42808 5.66348 5.73882 5.79742 6.04601 6.16182 6.55039 6.95969 7.01146 7.39481 7.76098 7.78492 7.98076 9.13087 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.009368 B = 0.005787 C = 0.003999 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2988.050597 B = 4837.173093 C = 7000.491252 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.076 3.924 2 N -0.603 5.603 3 C 0.516 3.484 4 O -0.553 6.553 5 C 0.149 3.851 6 H 0.121 0.879 7 C -0.133 4.133 8 C -0.112 4.112 9 C -0.134 4.134 10 C 0.109 3.891 11 N -0.619 5.619 12 C 0.684 3.316 13 N -0.850 5.850 14 O -0.600 6.600 15 C 0.176 3.824 16 H 0.058 0.942 17 C 0.149 3.851 18 N -0.754 5.754 19 C -0.225 4.225 20 H 0.067 0.933 21 C -0.050 4.050 22 N -0.976 5.976 23 Si 0.934 3.066 24 H -0.258 1.258 25 H -0.294 1.294 26 H -0.286 1.286 27 C -0.159 4.159 28 C -0.163 4.163 29 C -0.174 4.174 30 H 0.074 0.926 31 H 0.074 0.926 32 H 0.081 0.919 33 H 0.040 0.960 34 H 0.064 0.936 35 H 0.074 0.926 36 H 0.093 0.907 37 H 0.114 0.886 38 H 0.050 0.950 39 H 0.099 0.901 40 H 0.105 0.895 41 H 0.409 0.591 42 H 0.416 0.584 43 H 0.052 0.948 44 H 0.029 0.971 45 H 0.359 0.641 46 H 0.258 0.742 47 H 0.104 0.896 48 H 0.096 0.904 49 H 0.117 0.883 50 H 0.112 0.888 51 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.279 16.311 -22.069 28.391 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 N -0.336 5.336 3 C 0.304 3.696 4 O -0.430 6.430 5 C 0.041 3.959 6 H 0.138 0.862 7 C -0.172 4.172 8 C -0.149 4.149 9 C -0.172 4.172 10 C -0.012 4.012 11 N -0.360 5.360 12 C 0.383 3.617 13 N -0.422 5.422 14 O -0.478 6.478 15 C 0.072 3.928 16 H 0.076 0.924 17 C 0.022 3.978 18 N -0.399 5.399 19 C -0.356 4.356 20 H 0.085 0.915 21 C -0.242 4.242 22 N -0.627 5.627 23 Si 0.763 3.237 24 H -0.183 1.183 25 H -0.220 1.220 26 H -0.213 1.213 27 C -0.179 4.179 28 C -0.200 4.200 29 C -0.211 4.211 30 H 0.093 0.907 31 H 0.093 0.907 32 H 0.099 0.901 33 H 0.059 0.941 34 H 0.082 0.918 35 H 0.092 0.908 36 H 0.112 0.888 37 H 0.132 0.868 38 H 0.069 0.931 39 H 0.117 0.883 40 H 0.123 0.877 41 H 0.242 0.758 42 H 0.248 0.752 43 H 0.070 0.930 44 H 0.046 0.954 45 H 0.191 0.809 46 H 0.067 0.933 47 H 0.122 0.878 48 H 0.114 0.886 49 H 0.135 0.865 50 H 0.130 0.870 51 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -6.614 15.381 -21.800 27.487 hybrid contribution 1.276 0.867 0.460 1.610 sum -5.337 16.248 -21.339 27.347 Atomic orbital electron populations 1.21949 0.78039 1.04051 1.02575 1.47592 1.07787 1.04587 1.73667 1.20485 0.87789 0.85931 0.75357 1.90662 1.16268 1.87206 1.48838 1.21078 0.98499 0.87188 0.89123 0.86179 1.21941 1.01197 0.99446 0.94575 1.21527 1.00761 0.92069 1.00574 1.21973 1.00969 1.00282 0.93940 1.22057 1.01791 0.78807 0.98531 1.47092 1.43199 1.14066 1.31619 1.16342 0.79632 0.85234 0.80467 1.42915 1.51710 1.11097 1.36515 1.91165 1.66261 1.17812 1.72592 1.20402 0.95895 0.83258 0.93250 0.92366 1.21266 0.98953 0.92940 0.84622 1.42723 1.79706 1.15237 1.02256 1.19064 1.34346 0.98806 0.83384 0.91493 1.25216 1.02701 1.01386 0.94889 1.69829 1.56900 1.38375 0.97553 0.85742 0.78997 0.82898 0.76106 1.18302 1.22039 1.21303 1.22305 1.07477 0.90226 0.97900 1.23210 0.94179 0.99020 1.03572 1.23028 0.96405 0.98439 1.03257 0.90722 0.90678 0.90065 0.94092 0.91768 0.90765 0.88800 0.86798 0.93073 0.88301 0.87670 0.75806 0.75156 0.93037 0.95352 0.80864 0.93254 0.87758 0.88602 0.86459 0.86959 0.89791 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.98 9.31 127.77 1.19 3.17 16 2 N -0.60 -21.38 2.24 -822.58 -1.85 -23.23 16 3 C 0.52 20.01 4.54 87.66 0.40 20.41 16 4 O -0.55 -27.09 12.98 21.57 0.28 -26.81 16 5 C 0.15 4.17 2.77 44.23 0.12 4.29 16 6 H 0.12 2.61 5.70 -2.39 -0.01 2.60 16 7 C -0.13 -3.75 5.35 30.67 0.16 -3.58 16 8 C -0.11 -1.90 5.88 30.62 0.18 -1.72 16 9 C -0.13 -1.62 6.08 30.67 0.19 -1.43 16 10 C 0.11 1.25 6.43 86.36 0.56 1.80 16 11 N -0.62 -14.42 2.97 -817.06 -2.43 -16.85 16 12 C 0.68 19.65 8.18 179.06 1.46 21.11 16 13 N -0.85 -14.88 8.77 -184.75 -1.62 -16.50 16 14 O -0.60 -24.34 12.37 20.64 0.26 -24.08 16 15 C 0.18 6.76 2.59 44.99 0.12 6.88 16 16 H 0.06 2.75 6.90 -2.39 -0.02 2.73 16 17 C 0.15 6.25 4.13 86.38 0.36 6.60 16 18 N -0.75 -39.01 5.24 -343.45 -1.80 -40.81 16 19 C -0.23 -13.44 10.47 84.03 0.88 -12.55 16 20 H 0.07 4.25 8.06 -2.91 -0.02 4.22 16 21 C -0.05 -3.07 5.50 84.86 0.47 -2.60 16 22 N -0.98 -63.79 13.97 21.65 0.30 -63.49 16 23 Si 0.93 49.43 27.74 68.60 1.90 51.33 16 24 H -0.26 -12.47 7.11 99.48 0.71 -11.76 16 25 H -0.29 -15.56 7.11 99.48 0.71 -14.85 16 26 H -0.29 -15.74 6.52 99.48 0.65 -15.10 16 27 C -0.16 -4.79 5.49 -10.79 -0.06 -4.85 16 28 C -0.16 -4.00 9.58 30.61 0.29 -3.71 16 29 C -0.17 -4.61 9.94 30.61 0.30 -4.30 16 30 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 31 H 0.07 2.05 6.53 -2.39 -0.02 2.03 16 32 H 0.08 1.83 6.14 -2.39 -0.01 1.81 16 33 H 0.04 1.43 8.14 -2.39 -0.02 1.41 16 34 H 0.06 2.02 8.14 -2.38 -0.02 2.00 16 35 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 36 H 0.09 1.15 8.14 -2.39 -0.02 1.13 16 37 H 0.11 0.63 8.14 -2.39 -0.02 0.61 16 38 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 39 H 0.10 0.68 8.14 -2.39 -0.02 0.66 16 40 H 0.11 0.62 5.58 -2.38 -0.01 0.61 16 41 H 0.41 3.85 6.32 -92.71 -0.59 3.26 16 42 H 0.42 6.74 8.93 -92.71 -0.83 5.91 16 43 H 0.05 2.01 5.35 -2.39 -0.01 2.00 16 44 H 0.03 1.23 7.44 -2.38 -0.02 1.22 16 45 H 0.36 19.20 4.93 -92.71 -0.46 18.75 16 46 H 0.26 16.10 8.31 -92.71 -0.77 15.33 16 47 H 0.10 3.14 8.14 -2.38 -0.02 3.12 16 48 H 0.10 2.59 5.80 -2.39 -0.01 2.58 16 49 H 0.12 2.24 8.14 -2.39 -0.02 2.22 16 50 H 0.11 2.48 8.14 -2.39 -0.02 2.46 16 51 H 0.08 2.45 7.66 -2.39 -0.02 2.43 16 Total: -1.00 -90.69 386.48 0.71 -89.98 By element: Atomic # 1 Polarization: 41.90 SS G_CDS: -0.95 Total: 40.95 kcal Atomic # 6 Polarization: 22.90 SS G_CDS: 6.62 Total: 29.52 kcal Atomic # 7 Polarization: -153.49 SS G_CDS: -7.39 Total: -160.88 kcal Atomic # 8 Polarization: -51.43 SS G_CDS: 0.54 Total: -50.90 kcal Atomic # 14 Polarization: 49.43 SS G_CDS: 1.90 Total: 51.33 kcal Total: -90.69 0.71 -89.98 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755568315.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.632 kcal (2) G-P(sol) polarization free energy of solvation -90.690 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.058 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.713 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.976 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.344 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds