Wall clock time and date at job start Tue Mar 31 2020 21:14:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52995 * 115.54950 * 2 1 4 4 C 1.52996 * 117.49688 * 145.66812 * 2 1 3 5 5 C 1.50705 * 117.50037 * 214.97572 * 4 2 1 6 6 O 1.21272 * 120.00248 * 252.92201 * 5 4 2 7 7 N 1.34782 * 119.99542 * 72.91567 * 5 4 2 8 8 C 1.46497 * 120.00031 * 0.02562 * 7 5 4 9 9 C 1.50703 * 109.47023 * 90.00108 * 8 7 5 10 10 H 1.08003 * 119.99942 * 0.02562 * 9 8 7 11 11 C 1.37875 * 120.00050 * 179.97438 * 9 8 7 12 12 N 1.31511 * 120.00044 * 359.97438 * 11 9 8 13 13 Si 1.86802 * 119.99985 * 179.97438 * 11 9 8 14 14 H 1.48503 * 109.47073 * 89.99828 * 13 11 9 15 15 H 1.48501 * 109.47145 * 209.99989 * 13 11 9 16 16 H 1.48497 * 109.47133 * 330.00235 * 13 11 9 17 17 C 1.46504 * 119.99363 * 180.27643 * 7 5 4 18 18 C 1.52998 * 109.47129 * 269.72462 * 17 7 5 19 19 N 1.46903 * 109.46934 * 180.02562 * 18 17 7 20 20 C 1.47013 * 110.99922 * 293.63575 * 19 18 17 21 21 C 1.53096 * 109.25839 * 177.60972 * 20 19 18 22 22 O 1.43016 * 109.25986 * 56.84506 * 21 20 19 23 23 C 1.43010 * 113.73845 * 301.33621 * 22 21 20 24 24 C 1.47016 * 110.99646 * 170.00194 * 19 18 17 25 25 C 1.52998 * 60.03404 * 107.47503 * 4 2 1 26 26 C 1.53003 * 117.49894 * 107.49449 * 25 4 2 27 27 C 1.53000 * 117.49804 * 252.52322 * 25 4 2 28 28 H 1.09005 * 109.47080 * 325.71979 * 1 2 3 29 29 H 1.08997 * 109.47276 * 85.72029 * 1 2 3 30 30 H 1.08999 * 109.46818 * 205.72755 * 1 2 3 31 31 H 1.09007 * 109.46928 * 199.46146 * 3 2 1 32 32 H 1.09002 * 109.47255 * 319.45243 * 3 2 1 33 33 H 1.08999 * 109.47854 * 79.45962 * 3 2 1 34 34 H 1.09001 * 117.50522 * 359.97438 * 4 2 1 35 35 H 1.08999 * 109.46848 * 209.99380 * 8 7 5 36 36 H 1.08994 * 109.47586 * 330.00184 * 8 7 5 37 37 H 0.96996 * 120.00344 * 179.97438 * 12 11 9 38 38 H 1.08999 * 109.47062 * 29.73072 * 17 7 5 39 39 H 1.09004 * 109.46330 * 149.72582 * 17 7 5 40 40 H 1.08997 * 109.47146 * 300.00151 * 18 17 7 41 41 H 1.08996 * 109.47043 * 60.00030 * 18 17 7 42 42 H 1.09001 * 109.50539 * 297.54377 * 20 19 18 43 43 H 1.09001 * 109.50710 * 57.67434 * 20 19 18 44 44 H 1.08996 * 109.50631 * 296.91242 * 21 20 19 45 45 H 1.08998 * 109.54359 * 176.80490 * 21 20 19 46 46 H 1.08999 * 109.50699 * 298.72872 * 23 22 21 47 47 H 1.09004 * 109.54233 * 178.62376 * 23 22 21 48 48 H 1.08997 * 109.50540 * 302.32149 * 24 19 18 49 49 H 1.08995 * 109.50863 * 62.41684 * 24 19 18 50 50 H 1.09004 * 109.46535 * 111.39821 * 26 25 4 51 51 H 1.08993 * 109.47103 * 231.39500 * 26 25 4 52 52 H 1.08998 * 109.47005 * 351.40077 * 26 25 4 53 53 H 1.08995 * 109.47115 * 8.60308 * 27 25 4 54 54 H 1.09001 * 109.46838 * 128.60858 * 27 25 4 55 55 H 1.09004 * 109.46903 * 248.59785 * 27 25 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1899 1.3803 0.0000 4 6 2.2364 -1.1207 0.7654 5 6 3.5293 -0.7807 1.4611 6 8 4.5828 -1.1793 1.0117 7 7 3.5147 -0.0334 2.5827 8 6 2.2420 0.4478 3.1257 9 6 1.6944 -0.5667 4.0964 10 1 2.2401 -1.4784 4.2897 11 6 0.4973 -0.3304 4.7383 12 7 -0.1664 0.7805 4.5041 13 14 -0.1818 -1.5882 5.9409 14 1 0.3236 -1.2915 7.3055 15 1 -1.6654 -1.5252 5.9379 16 1 0.2568 -2.9478 5.5355 17 6 4.7720 0.3023 3.2556 18 6 5.0996 -0.7752 4.2913 19 7 6.3600 -0.4383 4.9664 20 6 7.4927 -0.5052 4.0316 21 6 8.7737 -0.0902 4.7598 22 8 8.9622 -0.9326 5.9001 23 6 7.8781 -0.8915 6.8318 24 6 6.5879 -1.3147 6.1246 25 6 2.2367 -1.1222 -0.7646 26 6 3.5494 -0.7781 -1.4712 27 6 1.3587 -2.1578 -1.4701 28 1 -0.3633 0.8492 0.5788 29 1 -0.3633 0.0767 -1.0248 30 1 -0.3633 -0.9258 0.4461 31 1 3.2209 1.2902 -0.3424 32 1 1.6421 2.0450 -0.6681 33 1 2.1771 1.7893 1.0103 34 1 1.6113 -1.8578 1.2693 35 1 2.4019 1.3946 3.6415 36 1 1.5313 0.5927 2.3121 37 1 -1.0087 0.9466 4.9554 38 1 5.5748 0.3554 2.5201 39 1 4.6712 1.2665 3.7537 40 1 4.2968 -0.8282 5.0267 41 1 5.2002 -1.7394 3.7931 42 1 7.5988 -1.5248 3.6608 43 1 7.3145 0.1703 3.1949 44 1 8.6885 0.9470 5.0838 45 1 9.6251 -0.1925 4.0870 46 1 7.7667 0.1224 7.2161 47 1 8.0809 -1.5734 7.6576 48 1 5.7494 -1.2300 6.8157 49 1 6.6789 -2.3472 5.7874 50 1 3.9367 -1.6663 -1.9706 51 1 3.3709 0.0045 -2.2085 52 1 4.2757 -0.4278 -0.7379 53 1 0.7294 -2.6610 -0.7362 54 1 0.7296 -1.6589 -2.2073 55 1 1.9920 -2.8910 -1.9697 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000073210770.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:14:30 Heat of formation + Delta-G solvation = -71.692013 kcal Electronic energy + Delta-G solvation = -32159.367362 eV Core-core repulsion = 28196.440878 eV Total energy + Delta-G solvation = -3962.926485 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.33 seconds Orbital eigenvalues (eV) -41.72811 -40.56319 -39.00653 -37.34498 -36.35378 -34.49334 -32.27986 -32.04919 -31.21464 -29.53650 -29.26501 -28.88517 -27.13500 -26.94238 -25.04736 -24.86569 -23.82606 -22.11490 -21.39260 -19.43458 -18.81216 -18.59263 -17.79900 -17.54399 -17.13950 -16.83873 -16.52863 -16.32755 -16.20184 -15.98267 -15.79621 -15.48654 -15.23925 -14.58589 -14.46312 -14.37362 -14.25139 -13.92723 -13.69185 -13.44193 -13.41429 -13.26475 -13.22755 -13.09264 -12.99347 -12.95216 -12.81206 -12.67314 -12.61624 -12.53260 -12.46868 -12.35373 -12.16321 -11.79767 -11.61863 -11.57621 -11.48221 -10.78837 -10.72679 -10.58060 -10.45509 -10.10518 -9.57580 -9.38795 -8.16424 -6.27828 1.37284 1.40717 1.47956 1.71314 2.17383 2.40583 2.67930 2.84788 2.97227 3.14258 3.63057 3.75229 3.76806 3.82756 3.89513 3.97603 4.05024 4.15867 4.19308 4.22870 4.27758 4.36280 4.39930 4.46173 4.57273 4.61595 4.69100 4.75612 4.76732 4.78212 4.83034 4.85094 4.86824 4.90255 4.98222 5.00282 5.02463 5.06415 5.08407 5.10052 5.13606 5.16215 5.22627 5.29429 5.40914 5.48102 5.63443 5.68403 5.77647 5.89551 5.96009 6.13235 6.13485 6.58808 6.85535 7.33746 7.45398 8.89079 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.008814 B = 0.004450 C = 0.003246 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3175.973350 B = 6290.176103 C = 8623.883324 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C -0.089 4.089 3 C -0.121 4.121 4 C -0.180 4.180 5 C 0.549 3.451 6 O -0.585 6.585 7 N -0.592 5.592 8 C 0.251 3.749 9 C -0.537 4.537 10 H 0.045 0.955 11 C 0.030 3.970 12 N -0.913 5.913 13 Si 0.942 3.058 14 H -0.277 1.277 15 H -0.280 1.280 16 H -0.277 1.277 17 C 0.131 3.869 18 C 0.062 3.938 19 N -0.534 5.534 20 C 0.016 3.984 21 C 0.068 3.932 22 O -0.402 6.402 23 C 0.069 3.931 24 C 0.015 3.985 25 C -0.087 4.087 26 C -0.121 4.121 27 C -0.109 4.109 28 H 0.051 0.949 29 H 0.082 0.918 30 H 0.049 0.951 31 H 0.053 0.947 32 H 0.080 0.920 33 H 0.049 0.951 34 H 0.109 0.891 35 H 0.012 0.988 36 H 0.053 0.947 37 H 0.266 0.734 38 H 0.073 0.927 39 H 0.081 0.919 40 H 0.071 0.929 41 H 0.009 0.991 42 H 0.025 0.975 43 H 0.090 0.910 44 H 0.068 0.932 45 H 0.117 0.883 46 H 0.067 0.933 47 H 0.118 0.882 48 H 0.089 0.911 49 H 0.029 0.971 50 H 0.060 0.940 51 H 0.068 0.932 52 H 0.059 0.941 53 H 0.053 0.947 54 H 0.080 0.920 55 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.112 -0.172 -5.288 9.685 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.090 4.090 3 C -0.178 4.178 4 C -0.201 4.201 5 C 0.339 3.661 6 O -0.468 6.468 7 N -0.321 5.321 8 C 0.131 3.869 9 C -0.575 4.575 10 H 0.063 0.937 11 C -0.171 4.171 12 N -0.552 5.552 13 Si 0.769 3.231 14 H -0.202 1.202 15 H -0.205 1.205 16 H -0.202 1.202 17 C 0.008 3.992 18 C -0.067 4.067 19 N -0.260 5.260 20 C -0.112 4.112 21 C -0.008 4.008 22 O -0.321 6.321 23 C -0.007 4.007 24 C -0.113 4.113 25 C -0.087 4.087 26 C -0.178 4.178 27 C -0.166 4.166 28 H 0.070 0.930 29 H 0.101 0.899 30 H 0.068 0.932 31 H 0.072 0.928 32 H 0.099 0.901 33 H 0.068 0.932 34 H 0.127 0.873 35 H 0.030 0.970 36 H 0.071 0.929 37 H 0.075 0.925 38 H 0.091 0.909 39 H 0.099 0.901 40 H 0.089 0.911 41 H 0.028 0.972 42 H 0.044 0.956 43 H 0.108 0.892 44 H 0.087 0.913 45 H 0.135 0.865 46 H 0.085 0.915 47 H 0.136 0.864 48 H 0.107 0.893 49 H 0.048 0.952 50 H 0.079 0.921 51 H 0.087 0.913 52 H 0.077 0.923 53 H 0.072 0.928 54 H 0.099 0.901 55 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 8.605 0.121 -5.240 10.076 hybrid contribution -0.995 -1.471 0.898 1.990 sum 7.610 -1.351 -4.342 8.865 Atomic orbital electron populations 1.21255 0.90933 1.01789 1.02215 1.21709 0.95386 0.90724 1.01150 1.21468 0.99966 0.94336 1.01988 1.22475 0.97204 1.05034 0.95371 1.19848 0.89666 0.76673 0.79941 1.90504 1.33770 1.55444 1.67034 1.48159 1.08592 1.50707 1.24655 1.19238 0.79953 0.93464 0.94283 1.21586 1.05846 1.04873 1.25223 0.93683 1.25451 0.96838 0.96820 0.97999 1.69982 1.16055 1.25557 1.43591 0.85798 0.77779 0.79731 0.79804 1.20236 1.20523 1.20179 1.21200 0.86105 0.97757 0.94174 1.22249 0.91569 0.96143 0.96742 1.62223 1.01926 1.52996 1.08864 1.22882 0.91865 1.00360 0.96143 1.22766 0.96327 0.94384 0.87342 1.87934 1.42956 1.67398 1.33842 1.22751 0.83978 1.02666 0.91349 1.22864 1.00465 0.94353 0.93643 1.21894 0.98147 0.98972 0.89703 1.21540 0.94584 1.01593 1.00061 1.21350 0.98514 0.96777 0.99988 0.92972 0.89894 0.93163 0.92776 0.90105 0.93183 0.87316 0.96989 0.92896 0.92495 0.90891 0.90113 0.91094 0.97219 0.95635 0.89219 0.91331 0.86494 0.91459 0.86382 0.89288 0.95219 0.92121 0.91299 0.92257 0.92782 0.90114 0.91471 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -3.13 8.83 71.98 0.64 -2.49 16 2 C -0.09 -2.87 1.57 -52.16 -0.08 -2.95 16 3 C -0.12 -3.78 8.42 71.98 0.61 -3.17 16 4 C -0.18 -6.79 4.20 -11.54 -0.05 -6.84 16 5 C 0.55 22.89 5.65 87.66 0.50 23.39 16 6 O -0.58 -25.84 13.87 -3.01 -0.04 -25.88 16 7 N -0.59 -24.81 2.45 -826.15 -2.03 -26.84 16 8 C 0.25 11.76 4.08 85.63 0.35 12.11 16 9 C -0.54 -27.47 8.93 25.60 0.23 -27.24 16 10 H 0.04 2.39 7.44 -2.91 -0.02 2.36 16 11 C 0.03 1.53 5.46 84.65 0.46 1.99 16 12 N -0.91 -48.99 13.29 21.45 0.28 -48.70 16 13 Si 0.94 41.66 29.54 68.60 2.03 43.68 16 14 H -0.28 -12.03 7.11 99.48 0.71 -11.32 16 15 H -0.28 -12.09 7.11 99.48 0.71 -11.38 16 16 H -0.28 -12.23 7.11 99.48 0.71 -11.53 16 17 C 0.13 4.95 5.39 86.38 0.47 5.41 16 18 C 0.06 2.31 5.28 86.30 0.46 2.76 16 19 N -0.53 -16.56 4.73 -895.23 -4.23 -20.79 16 20 C 0.02 0.43 5.44 86.31 0.47 0.90 16 21 C 0.07 1.54 7.01 72.01 0.50 2.04 16 22 O -0.40 -10.18 10.83 -148.98 -1.61 -11.79 16 23 C 0.07 1.55 7.01 72.01 0.50 2.05 16 24 C 0.01 0.41 5.65 86.31 0.49 0.90 16 25 C -0.09 -2.62 2.70 -52.16 -0.14 -2.76 16 26 C -0.12 -3.56 7.86 71.98 0.57 -2.99 16 27 C -0.11 -2.66 8.88 71.98 0.64 -2.02 16 28 H 0.05 1.70 8.09 -2.38 -0.02 1.68 16 29 H 0.08 1.95 8.02 -2.39 -0.02 1.93 16 30 H 0.05 1.57 7.77 -2.39 -0.02 1.55 16 31 H 0.05 1.69 5.94 -2.38 -0.01 1.68 16 32 H 0.08 2.11 8.13 -2.39 -0.02 2.09 16 33 H 0.05 1.79 6.01 -2.39 -0.01 1.77 16 34 H 0.11 4.46 7.96 -2.39 -0.02 4.44 16 35 H 0.01 0.61 7.89 -2.39 -0.02 0.59 16 36 H 0.05 2.52 4.44 -2.39 -0.01 2.51 16 37 H 0.27 13.62 8.31 -92.71 -0.77 12.85 16 38 H 0.07 2.67 5.79 -2.39 -0.01 2.66 16 39 H 0.08 2.97 7.89 -2.38 -0.02 2.95 16 40 H 0.07 2.94 7.19 -2.39 -0.02 2.92 16 41 H 0.01 0.40 8.12 -2.39 -0.02 0.38 16 42 H 0.03 0.78 8.14 -2.39 -0.02 0.77 16 43 H 0.09 2.44 6.38 -2.39 -0.02 2.42 16 44 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 45 H 0.12 2.09 8.14 -2.39 -0.02 2.07 16 46 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 47 H 0.12 2.08 8.14 -2.38 -0.02 2.06 16 48 H 0.09 2.39 8.09 -2.39 -0.02 2.37 16 49 H 0.03 0.87 8.14 -2.39 -0.02 0.85 16 50 H 0.06 1.67 7.92 -2.38 -0.02 1.65 16 51 H 0.07 1.72 8.10 -2.39 -0.02 1.70 16 52 H 0.06 2.09 4.38 -2.39 -0.01 2.08 16 53 H 0.05 1.36 7.77 -2.39 -0.02 1.34 16 54 H 0.08 1.62 8.02 -2.39 -0.02 1.61 16 55 H 0.07 1.50 7.92 -2.38 -0.02 1.48 16 Total: -1.00 -59.74 414.80 1.85 -57.89 By element: Atomic # 1 Polarization: 30.47 SS G_CDS: 0.85 Total: 31.32 kcal Atomic # 6 Polarization: -5.50 SS G_CDS: 6.60 Total: 1.10 kcal Atomic # 7 Polarization: -90.35 SS G_CDS: -5.97 Total: -96.33 kcal Atomic # 8 Polarization: -36.01 SS G_CDS: -1.65 Total: -37.67 kcal Atomic # 14 Polarization: 41.66 SS G_CDS: 2.03 Total: 43.68 kcal Total: -59.74 1.85 -57.89 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000073210770.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.801 kcal (2) G-P(sol) polarization free energy of solvation -59.737 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.538 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.846 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.891 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.692 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.34 seconds