Wall clock time and date at job start Tue Mar 31 2020 20:46:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86808 * 119.99649 * 2 1 4 4 H 1.48501 * 109.46755 * 269.99713 * 3 2 1 5 5 H 1.48498 * 109.47373 * 29.99434 * 3 2 1 6 6 H 1.48494 * 109.46970 * 150.00032 * 3 2 1 7 7 C 1.37868 * 120.00452 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99965 * 0.02562 * 7 2 1 9 9 C 1.50703 * 120.00275 * 180.02562 * 7 2 1 10 10 N 1.46502 * 109.47083 * 180.02562 * 9 7 2 11 11 C 1.46498 * 119.99847 * 273.97565 * 10 9 7 12 12 C 1.52997 * 109.47239 * 270.00239 * 11 10 9 13 13 N 1.46907 * 109.47108 * 180.02562 * 12 11 10 14 14 C 1.47014 * 110.99728 * 293.63181 * 13 12 11 15 15 C 1.53099 * 109.25237 * 177.60563 * 14 13 12 16 16 O 1.43019 * 109.25938 * 56.85732 * 15 14 13 17 17 C 1.43021 * 113.73147 * 301.32247 * 16 15 14 18 18 C 1.47021 * 110.99778 * 169.99909 * 13 12 11 19 19 C 1.34779 * 120.00208 * 93.97894 * 10 9 7 20 20 O 1.21279 * 120.00055 * 185.11998 * 19 10 9 21 21 C 1.50702 * 119.99744 * 5.11601 * 19 10 9 22 22 C 1.54065 * 108.87950 * 277.68872 * 21 19 10 23 23 C 1.54068 * 112.81811 * 197.50558 * 22 21 19 24 24 C 1.50465 * 112.49851 * 318.28567 * 23 22 21 25 25 C 1.54244 * 108.51838 * 94.15012 * 24 23 22 26 26 C 1.45536 * 112.40818 * 280.00844 * 25 24 23 27 27 C 1.50477 * 108.87430 * 154.71683 * 21 19 10 28 28 H 0.97005 * 120.00258 * 0.02562 * 1 2 3 29 29 H 1.08996 * 109.46936 * 60.00310 * 9 7 2 30 30 H 1.09002 * 109.47064 * 299.99978 * 9 7 2 31 31 H 1.09002 * 109.47096 * 30.00205 * 11 10 9 32 32 H 1.09002 * 109.47162 * 150.00305 * 11 10 9 33 33 H 1.09002 * 109.47048 * 299.99995 * 12 11 10 34 34 H 1.08996 * 109.47269 * 59.99620 * 12 11 10 35 35 H 1.08995 * 109.50573 * 297.54246 * 14 13 12 36 36 H 1.08997 * 109.50535 * 57.67999 * 14 13 12 37 37 H 1.08993 * 109.51166 * 296.91794 * 15 14 13 38 38 H 1.09005 * 109.54014 * 176.80528 * 15 14 13 39 39 H 1.08996 * 109.50857 * 298.73700 * 17 16 15 40 40 H 1.09001 * 109.54022 * 178.62542 * 17 16 15 41 41 H 1.08999 * 109.50356 * 302.32976 * 18 13 12 42 42 H 1.09002 * 109.50600 * 62.41296 * 18 13 12 43 43 H 1.08997 * 108.85133 * 36.15815 * 21 19 10 44 44 H 1.08999 * 108.81327 * 318.37236 * 22 21 19 45 45 H 1.09001 * 108.81196 * 76.75862 * 22 21 19 46 46 H 1.08997 * 108.87211 * 197.50737 * 23 22 21 47 47 H 1.08999 * 108.87321 * 79.06609 * 23 22 21 48 48 H 1.09007 * 109.63424 * 334.44354 * 24 23 22 49 49 H 1.09000 * 109.62931 * 213.85546 * 24 23 22 50 50 H 1.08998 * 108.89499 * 40.76685 * 25 24 23 51 51 H 1.09002 * 108.89395 * 159.34921 * 25 24 23 52 52 H 1.09005 * 108.89560 * 182.68562 * 26 25 24 53 53 H 1.08994 * 108.89772 * 301.28054 * 26 25 24 54 54 H 1.08998 * 109.63166 * 95.21495 * 27 21 19 55 55 H 1.08999 * 109.78778 * 334.73038 * 27 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6179 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4464 2.6528 0.6999 6 1 3.5466 1.4403 0.7000 7 6 2.0046 -1.1939 0.0005 8 1 1.4646 -2.1293 0.0005 9 6 3.5116 -1.1939 0.0011 10 7 4.0000 -2.5751 0.0010 11 6 4.1607 -3.2953 1.2666 12 6 5.5733 -3.0663 1.8078 13 7 5.7346 -3.7889 3.0766 14 6 4.8706 -3.2194 4.1208 15 6 5.0253 -4.0374 5.4057 16 8 6.4023 -4.0535 5.7918 17 6 7.2723 -4.6024 4.7982 18 6 7.1404 -3.7902 3.5071 19 6 4.3014 -3.1832 -1.1634 20 8 4.6165 -4.3543 -1.1721 21 6 4.2469 -2.4079 -2.4545 22 6 2.7882 -2.3637 -2.9483 23 6 2.6726 -1.9845 -4.4371 24 6 3.6112 -0.8736 -4.8228 25 6 4.9077 -1.4982 -5.3778 26 6 5.8023 -1.9491 -4.3222 27 6 5.1722 -3.0541 -3.4498 28 1 -0.4851 0.8401 -0.0004 29 1 3.8745 -0.6799 0.8911 30 1 3.8752 -0.6802 -0.8889 31 1 3.4311 -2.9285 1.9886 32 1 4.0036 -4.3611 1.1006 33 1 6.3029 -3.4331 1.0859 34 1 5.7305 -2.0005 1.9737 35 1 5.1610 -2.1861 4.3100 36 1 3.8320 -3.2520 3.7916 37 1 4.6844 -5.0578 5.2309 38 1 4.4301 -3.5857 6.1994 39 1 6.9967 -5.6392 4.6057 40 1 8.3025 -4.5592 5.1516 41 1 7.7587 -4.2392 2.7298 42 1 7.4673 -2.7658 3.6857 43 1 4.5857 -1.3889 -2.2680 44 1 2.3368 -3.3446 -2.7992 45 1 2.2390 -1.6311 -2.3569 46 1 1.6496 -1.6691 -4.6421 47 1 2.8971 -2.8623 -5.0430 48 1 3.8424 -0.2684 -3.9461 49 1 3.1474 -0.2517 -5.5885 50 1 4.6481 -2.3488 -6.0079 51 1 5.4258 -0.7553 -5.9844 52 1 6.7160 -2.3347 -4.7746 53 1 6.0545 -1.1003 -3.6866 54 1 4.6091 -3.7420 -4.0804 55 1 5.9573 -3.5982 -2.9246 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000101867928.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:46:30 Heat of formation + Delta-G solvation = -107.691799 kcal Electronic energy + Delta-G solvation = -31813.309271 eV Core-core repulsion = 27848.821718 eV Total energy + Delta-G solvation = -3964.487552 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.29 seconds Orbital eigenvalues (eV) -41.49415 -40.53156 -39.03048 -37.44779 -36.44081 -34.54668 -33.53162 -33.02726 -32.21933 -31.25742 -29.55677 -27.55880 -25.83073 -25.67804 -25.05316 -24.44500 -23.29729 -21.43063 -21.37236 -20.90336 -19.53475 -18.92786 -18.15820 -17.80879 -17.21836 -17.05430 -16.55821 -16.34520 -16.21469 -16.00343 -15.74088 -15.52694 -15.34146 -15.07050 -14.75636 -14.65191 -14.54384 -14.37633 -13.93626 -13.87781 -13.69070 -13.48068 -13.21586 -13.02755 -12.95599 -12.91276 -12.49948 -12.44853 -12.33554 -12.20299 -12.10047 -11.87331 -11.72913 -11.55192 -11.47592 -11.46266 -11.26148 -11.21458 -11.11307 -10.76033 -10.74278 -10.50240 -9.59450 -9.39772 -8.28623 -6.33753 1.37483 1.39439 1.47244 1.69275 2.09919 2.33108 2.80558 2.95993 3.04921 3.56863 3.68394 3.78763 3.87043 3.91651 3.95876 4.04752 4.16479 4.20937 4.24309 4.27558 4.30208 4.34537 4.35607 4.40644 4.43107 4.54779 4.56098 4.65468 4.67806 4.70142 4.76097 4.79216 4.83609 4.88476 4.91320 4.96209 4.99474 5.05256 5.10880 5.20171 5.30141 5.35195 5.38068 5.42529 5.45665 5.49168 5.55306 5.61842 5.66883 5.85506 5.89518 6.13854 6.18836 6.59692 6.70364 7.23205 7.34132 8.87324 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.010119 B = 0.003850 C = 0.003060 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2766.525315 B = 7271.324225 C = 9148.407772 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.938 5.938 2 C 0.027 3.973 3 Si 0.927 3.073 4 H -0.257 1.257 5 H -0.287 1.287 6 H -0.244 1.244 7 C -0.526 4.526 8 H 0.030 0.970 9 C 0.218 3.782 10 N -0.595 5.595 11 C 0.126 3.874 12 C 0.062 3.938 13 N -0.542 5.542 14 C 0.012 3.988 15 C 0.068 3.932 16 O -0.402 6.402 17 C 0.065 3.935 18 C 0.018 3.982 19 C 0.513 3.487 20 O -0.590 6.590 21 C -0.089 4.089 22 C -0.105 4.105 23 C -0.107 4.107 24 C -0.120 4.120 25 C -0.113 4.113 26 C -0.112 4.112 27 C -0.096 4.096 28 H 0.267 0.733 29 H 0.037 0.963 30 H 0.050 0.950 31 H 0.071 0.929 32 H 0.065 0.935 33 H 0.071 0.929 34 H 0.036 0.964 35 H 0.039 0.961 36 H 0.085 0.915 37 H 0.062 0.938 38 H 0.115 0.885 39 H 0.062 0.938 40 H 0.121 0.879 41 H 0.094 0.906 42 H 0.040 0.960 43 H 0.093 0.907 44 H 0.031 0.969 45 H 0.068 0.932 46 H 0.055 0.945 47 H 0.068 0.932 48 H 0.055 0.945 49 H 0.074 0.926 50 H 0.066 0.934 51 H 0.075 0.925 52 H 0.077 0.923 53 H 0.060 0.940 54 H 0.065 0.935 55 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.793 -1.999 -0.923 14.956 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.172 4.172 3 Si 0.750 3.250 4 H -0.181 1.181 5 H -0.213 1.213 6 H -0.167 1.167 7 C -0.565 4.565 8 H 0.048 0.952 9 C 0.096 3.904 10 N -0.325 5.325 11 C 0.003 3.997 12 C -0.067 4.067 13 N -0.268 5.268 14 C -0.116 4.116 15 C -0.009 4.009 16 O -0.321 6.321 17 C -0.012 4.012 18 C -0.110 4.110 19 C 0.303 3.697 20 O -0.472 6.472 21 C -0.110 4.110 22 C -0.143 4.143 23 C -0.145 4.145 24 C -0.158 4.158 25 C -0.150 4.150 26 C -0.150 4.150 27 C -0.134 4.134 28 H 0.077 0.923 29 H 0.055 0.945 30 H 0.067 0.933 31 H 0.090 0.910 32 H 0.084 0.916 33 H 0.089 0.911 34 H 0.054 0.946 35 H 0.057 0.943 36 H 0.103 0.897 37 H 0.080 0.920 38 H 0.133 0.867 39 H 0.080 0.920 40 H 0.139 0.861 41 H 0.113 0.887 42 H 0.058 0.942 43 H 0.111 0.889 44 H 0.050 0.950 45 H 0.087 0.913 46 H 0.073 0.927 47 H 0.086 0.914 48 H 0.073 0.927 49 H 0.093 0.907 50 H 0.084 0.916 51 H 0.094 0.906 52 H 0.096 0.904 53 H 0.078 0.922 54 H 0.084 0.916 55 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 14.723 -2.900 -0.798 15.027 hybrid contribution -0.607 1.380 0.177 1.518 sum 14.115 -1.520 -0.621 14.211 Atomic orbital electron populations 1.70039 1.08211 1.28181 1.51334 1.25626 0.95272 1.02453 0.93845 0.86014 0.79810 0.79206 0.79944 1.18120 1.21308 1.16697 1.21318 0.90749 0.93043 1.51363 0.95164 1.19685 0.93381 0.79082 0.98280 1.47944 1.63306 1.15548 1.05696 1.21171 0.96302 0.97093 0.85179 1.22218 0.97285 0.96014 0.91171 1.62127 1.07644 1.54235 1.02798 1.22906 0.98734 0.97173 0.92836 1.22728 0.82735 1.00037 0.95423 1.87946 1.17994 1.83960 1.42170 1.22795 0.95502 0.96415 0.86466 1.22862 0.88780 1.00178 0.99171 1.21242 0.75044 0.87089 0.86282 1.90571 1.51378 1.17571 1.87637 1.21111 0.98089 1.00008 0.91794 1.21845 0.93637 1.01037 0.97810 1.21262 0.99843 0.99369 0.93994 1.21385 0.96116 0.97395 1.00865 1.20475 0.95554 1.00920 0.98040 1.20481 0.99144 0.97647 0.97688 1.21216 0.97577 0.98034 0.96589 0.92350 0.94521 0.93270 0.91040 0.91609 0.91094 0.94617 0.94313 0.89700 0.91954 0.86724 0.92019 0.86119 0.88735 0.94202 0.88894 0.95013 0.91292 0.92665 0.91361 0.92658 0.90746 0.91581 0.90601 0.90446 0.92162 0.91625 0.92286 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -54.41 13.96 21.44 0.30 -54.11 16 2 C 0.03 1.44 5.47 84.65 0.46 1.90 16 3 Si 0.93 38.92 27.47 68.60 1.88 40.80 16 4 H -0.26 -10.18 7.11 99.48 0.71 -9.47 16 5 H -0.29 -12.24 7.11 99.48 0.71 -11.53 16 6 H -0.24 -9.29 6.54 99.48 0.65 -8.64 16 7 C -0.53 -27.22 7.98 25.60 0.20 -27.02 16 8 H 0.03 1.83 8.06 -2.91 -0.02 1.81 16 9 C 0.22 9.22 3.82 85.63 0.33 9.55 16 10 N -0.60 -24.19 2.46 -826.15 -2.03 -26.22 16 11 C 0.13 4.72 5.40 86.38 0.47 5.18 16 12 C 0.06 1.93 5.28 86.30 0.46 2.39 16 13 N -0.54 -14.89 4.73 -895.19 -4.23 -19.13 16 14 C 0.01 0.30 5.44 86.31 0.47 0.77 16 15 C 0.07 1.49 7.01 72.02 0.50 2.00 16 16 O -0.40 -9.50 10.83 -148.98 -1.61 -11.11 16 17 C 0.06 1.26 7.01 72.01 0.50 1.77 16 18 C 0.02 0.40 5.65 86.31 0.49 0.89 16 19 C 0.51 20.89 6.53 87.66 0.57 21.46 16 20 O -0.59 -26.54 15.36 -3.03 -0.05 -26.58 16 21 C -0.09 -3.06 1.28 -12.00 -0.02 -3.08 16 22 C -0.11 -3.88 5.04 31.32 0.16 -3.73 16 23 C -0.11 -3.11 5.31 30.14 0.16 -2.95 16 24 C -0.12 -2.95 5.61 30.20 0.17 -2.78 16 25 C -0.11 -2.26 5.26 28.74 0.15 -2.11 16 26 C -0.11 -2.45 5.26 28.74 0.15 -2.30 16 27 C -0.10 -2.78 4.75 30.20 0.14 -2.63 16 28 H 0.27 14.57 8.31 -92.70 -0.77 13.80 16 29 H 0.04 1.51 7.16 -2.39 -0.02 1.50 16 30 H 0.05 1.96 5.11 -2.39 -0.01 1.95 16 31 H 0.07 2.74 6.45 -2.39 -0.02 2.72 16 32 H 0.07 2.68 7.36 -2.39 -0.02 2.66 16 33 H 0.07 2.27 8.04 -2.39 -0.02 2.25 16 34 H 0.04 1.11 8.12 -2.39 -0.02 1.09 16 35 H 0.04 1.04 8.14 -2.39 -0.02 1.02 16 36 H 0.08 2.33 6.38 -2.39 -0.02 2.32 16 37 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 38 H 0.11 2.10 8.14 -2.38 -0.02 2.08 16 39 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 40 H 0.12 1.72 8.14 -2.39 -0.02 1.70 16 41 H 0.09 1.90 8.09 -2.39 -0.02 1.88 16 42 H 0.04 0.90 8.14 -2.39 -0.02 0.88 16 43 H 0.09 3.06 4.72 -2.39 -0.01 3.05 16 44 H 0.03 1.28 7.97 -2.39 -0.02 1.26 16 45 H 0.07 3.02 5.75 -2.39 -0.01 3.01 16 46 H 0.05 1.63 8.14 -2.39 -0.02 1.61 16 47 H 0.07 1.79 6.63 -2.39 -0.02 1.77 16 48 H 0.05 1.50 6.97 -2.38 -0.02 1.49 16 49 H 0.07 1.60 8.14 -2.39 -0.02 1.59 16 50 H 0.07 1.26 7.47 -2.39 -0.02 1.24 16 51 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 52 H 0.08 1.41 8.14 -2.38 -0.02 1.39 16 53 H 0.06 1.32 7.46 -2.39 -0.02 1.30 16 54 H 0.07 1.91 6.98 -2.39 -0.02 1.89 16 55 H 0.06 1.83 7.19 -2.39 -0.02 1.81 16 Total: -1.00 -64.34 403.27 0.43 -63.91 By element: Atomic # 1 Polarization: 32.34 SS G_CDS: 0.79 Total: 33.14 kcal Atomic # 6 Polarization: -6.07 SS G_CDS: 5.37 Total: -0.69 kcal Atomic # 7 Polarization: -93.49 SS G_CDS: -5.96 Total: -99.45 kcal Atomic # 8 Polarization: -36.04 SS G_CDS: -1.66 Total: -37.70 kcal Atomic # 14 Polarization: 38.92 SS G_CDS: 1.88 Total: 40.80 kcal Total: -64.34 0.43 -63.91 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000101867928.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.785 kcal (2) G-P(sol) polarization free energy of solvation -64.338 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.123 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.431 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.907 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.692 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.29 seconds