Wall clock time and date at job start Tue Mar 31 2020 21:28:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53001 * 109.47175 * 2 1 4 4 C 1.52997 * 109.47175 * 179.97438 * 3 2 1 5 5 C 1.52995 * 109.47185 * 60.00169 * 4 3 2 6 6 O 1.42898 * 109.47147 * 59.99887 * 5 4 3 7 7 C 1.42908 * 114.00014 * 150.00465 * 6 5 4 8 8 C 1.50700 * 109.47222 * 180.02562 * 7 6 5 9 9 O 1.21283 * 119.99638 * 359.97438 * 8 7 6 10 10 N 1.34770 * 120.00068 * 180.02562 * 8 7 6 11 11 C 1.46503 * 120.00084 * 179.97438 * 10 8 7 12 12 C 1.53001 * 109.47208 * 179.97438 * 11 10 8 13 13 C 1.53352 * 109.41800 * 295.12674 * 12 11 10 14 14 C 1.53190 * 109.15070 * 178.67720 * 13 12 11 15 15 N 1.46925 * 108.89356 * 54.57285 * 14 13 12 16 16 C 1.36935 * 120.62758 * 126.30089 * 15 14 13 17 17 H 1.08001 * 120.00088 * 332.62829 * 16 15 14 18 18 C 1.38817 * 119.99782 * 152.62208 * 16 15 14 19 19 N 1.31618 * 119.99923 * 159.36242 * 18 16 15 20 20 Si 1.86801 * 120.00195 * 339.36341 * 18 16 15 21 21 H 1.48501 * 109.47054 * 92.89675 * 20 18 16 22 22 H 1.48497 * 109.47324 * 212.90179 * 20 18 16 23 23 H 1.48501 * 109.46722 * 332.89954 * 20 18 16 24 24 C 1.46926 * 118.73822 * 306.31916 * 15 14 13 25 25 C 1.53037 * 109.46053 * 174.99519 * 12 11 10 26 26 C 1.53006 * 109.47168 * 299.99775 * 5 4 3 27 27 C 1.52997 * 109.46884 * 60.00040 * 26 5 4 28 28 H 1.09002 * 109.47274 * 60.00012 * 1 2 3 29 29 H 1.09003 * 109.46848 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47544 * 299.99853 * 1 2 3 31 31 H 1.09002 * 109.47274 * 119.99988 * 2 1 3 32 32 H 1.09001 * 109.47199 * 59.99984 * 3 2 1 33 33 H 1.09002 * 109.47010 * 300.00150 * 3 2 1 34 34 H 1.08999 * 109.47028 * 299.99527 * 4 3 2 35 35 H 1.09003 * 109.46848 * 180.02562 * 4 3 2 36 36 H 1.08999 * 109.47085 * 179.97438 * 5 4 3 37 37 H 1.08996 * 109.47262 * 59.99479 * 7 6 5 38 38 H 1.09008 * 109.46438 * 299.99573 * 7 6 5 39 39 H 0.97004 * 120.00152 * 359.97438 * 10 8 7 40 40 H 1.08996 * 109.47010 * 59.99318 * 11 10 8 41 41 H 1.08996 * 109.46600 * 299.99324 * 11 10 8 42 42 H 1.09008 * 109.45887 * 55.02318 * 12 11 10 43 43 H 1.09004 * 109.68561 * 58.70472 * 13 12 11 44 44 H 1.09004 * 109.47287 * 298.51133 * 13 12 11 45 45 H 1.09004 * 109.58215 * 294.71811 * 14 13 12 46 46 H 1.08997 * 109.58828 * 174.43980 * 14 13 12 47 47 H 0.96999 * 119.99917 * 180.02562 * 19 18 16 48 48 H 1.09002 * 109.58248 * 173.39705 * 24 15 14 49 49 H 1.08994 * 109.58922 * 293.68210 * 24 15 14 50 50 H 1.09003 * 109.49698 * 61.43697 * 25 12 11 51 51 H 1.08994 * 109.52761 * 301.35110 * 25 12 11 52 52 H 1.08992 * 109.46844 * 180.02562 * 26 5 4 53 53 H 1.08999 * 109.46805 * 300.00495 * 26 5 4 54 54 H 1.08997 * 109.47255 * 180.02562 * 27 26 5 55 55 H 1.09002 * 109.47274 * 60.00130 * 27 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 6 4.0805 0.7211 -1.2482 6 8 3.6046 1.3946 -2.4153 7 6 4.4773 1.2915 -3.5423 8 6 3.8801 2.0344 -4.7096 9 8 2.8122 2.5964 -4.5885 10 7 4.5323 2.0735 -5.8883 11 6 3.9516 2.7952 -7.0233 12 6 4.8859 2.6849 -8.2299 13 6 6.2052 3.4029 -7.9204 14 6 7.1481 3.2604 -9.1193 15 7 6.4625 3.7471 -10.3242 16 6 7.0390 4.7038 -11.1164 17 1 7.7332 5.4123 -10.6892 18 6 6.7311 4.7628 -12.4688 19 7 6.9360 5.8748 -13.1424 20 14 6.0262 3.2639 -13.3325 21 1 4.5429 3.3311 -13.3089 22 1 6.4982 3.2362 -14.7402 23 1 6.4771 2.0330 -12.6349 24 6 5.1466 3.1881 -10.6626 25 6 4.2232 3.3310 -9.4486 26 6 3.5705 -0.7214 -1.2483 27 6 2.0405 -0.7214 -1.2489 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 1.8933 -0.5138 0.8900 32 1 1.6767 1.9564 0.8900 33 1 1.6766 1.9563 -0.8900 34 1 3.9329 0.9289 0.8909 35 1 3.9332 2.4702 0.0011 36 1 5.1705 0.7215 -1.2480 37 1 4.6067 0.2421 -3.8068 38 1 5.4456 1.7255 -3.2928 39 1 5.3863 1.6237 -5.9853 40 1 3.8225 3.8447 -6.7588 41 1 2.9832 2.3615 -7.2724 42 1 5.0857 1.6340 -8.4396 43 1 6.6673 2.9580 -7.0391 44 1 6.0093 4.4590 -7.7351 45 1 7.4170 2.2122 -9.2501 46 1 8.0487 3.8500 -8.9479 47 1 6.7205 5.9161 -14.0872 48 1 4.7252 3.7318 -11.5082 49 1 5.2526 2.1348 -10.9217 50 1 4.0459 4.3878 -9.2488 51 1 3.2743 2.8352 -9.6530 52 1 3.9346 -1.2354 -2.1378 53 1 3.9335 -1.2351 -0.3580 54 1 1.6772 -1.7491 -1.2485 55 1 1.6776 -0.2077 -2.1391 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000331049653.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:28:22 Heat of formation + Delta-G solvation = -111.397502 kcal Electronic energy + Delta-G solvation = -29915.537210 eV Core-core repulsion = 25950.888967 eV Total energy + Delta-G solvation = -3964.648244 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.29 seconds Orbital eigenvalues (eV) -41.02241 -40.20180 -39.45192 -37.32347 -36.42482 -34.53331 -33.00434 -32.67044 -31.87333 -31.66706 -29.70714 -27.78316 -26.86164 -25.39231 -24.23936 -23.57911 -22.80000 -22.11656 -21.64075 -20.82812 -20.50762 -18.81753 -18.26073 -17.63241 -17.21320 -17.11302 -16.51862 -16.30196 -16.01953 -15.82392 -15.35289 -15.17306 -15.11640 -15.01237 -14.84283 -14.66118 -14.43445 -13.95777 -13.94573 -13.86986 -13.63657 -13.52262 -13.37603 -13.11736 -12.92529 -12.56304 -12.53537 -12.36846 -12.31552 -12.24514 -12.11777 -11.97717 -11.73921 -11.58543 -11.38764 -11.29679 -11.19965 -11.19303 -10.89953 -10.83767 -10.64756 -10.36717 -10.08416 -8.91106 -8.15946 -5.46979 1.30820 1.41332 1.50777 1.61012 1.87308 2.42475 3.05554 3.07408 3.38808 3.72851 3.79260 3.80526 3.86673 3.88425 3.92880 3.97558 4.21432 4.23954 4.27518 4.34666 4.39159 4.42149 4.44549 4.54779 4.55349 4.64076 4.66296 4.70231 4.73346 4.77006 4.78097 4.89476 4.91048 4.97507 5.00651 5.02165 5.10338 5.15159 5.17311 5.17359 5.21760 5.28697 5.31858 5.35263 5.39882 5.40464 5.45686 5.60795 5.66623 5.88305 6.13508 6.23036 6.60238 6.94389 7.26587 7.65105 8.04914 9.04103 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.030743 B = 0.001787 C = 0.001760 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 910.559233 B =15663.928253 C =15901.106747 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.088 4.088 3 C -0.112 4.112 4 C -0.115 4.115 5 C 0.082 3.918 6 O -0.382 6.382 7 C 0.045 3.955 8 C 0.507 3.493 9 O -0.578 6.578 10 N -0.711 5.711 11 C 0.136 3.864 12 C -0.078 4.078 13 C -0.118 4.118 14 C 0.141 3.859 15 N -0.622 5.622 16 C -0.247 4.247 17 H 0.049 0.951 18 C -0.040 4.040 19 N -0.960 5.960 20 Si 0.950 3.050 21 H -0.276 1.276 22 H -0.313 1.313 23 H -0.257 1.257 24 C 0.120 3.880 25 C -0.122 4.122 26 C -0.138 4.138 27 C -0.110 4.110 28 H 0.038 0.962 29 H 0.060 0.940 30 H 0.059 0.941 31 H 0.082 0.918 32 H 0.064 0.936 33 H 0.040 0.960 34 H 0.097 0.903 35 H 0.061 0.939 36 H 0.084 0.916 37 H 0.105 0.895 38 H 0.107 0.893 39 H 0.418 0.582 40 H 0.050 0.950 41 H 0.062 0.938 42 H 0.093 0.907 43 H 0.093 0.907 44 H 0.044 0.956 45 H 0.043 0.957 46 H 0.051 0.949 47 H 0.260 0.740 48 H 0.044 0.956 49 H 0.038 0.962 50 H 0.050 0.950 51 H 0.081 0.919 52 H 0.068 0.932 53 H 0.090 0.910 54 H 0.064 0.936 55 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.974 -18.675 29.731 35.614 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.107 4.107 3 C -0.149 4.149 4 C -0.152 4.152 5 C 0.024 3.976 6 O -0.301 6.301 7 C -0.034 4.034 8 C 0.294 3.706 9 O -0.457 6.457 10 N -0.366 5.366 11 C 0.012 3.988 12 C -0.097 4.097 13 C -0.157 4.157 14 C 0.016 3.984 15 N -0.347 5.347 16 C -0.377 4.377 17 H 0.066 0.934 18 C -0.234 4.234 19 N -0.606 5.606 20 Si 0.779 3.221 21 H -0.203 1.203 22 H -0.242 1.242 23 H -0.181 1.181 24 C -0.005 4.005 25 C -0.161 4.161 26 C -0.176 4.176 27 C -0.148 4.148 28 H 0.057 0.943 29 H 0.079 0.921 30 H 0.078 0.922 31 H 0.100 0.900 32 H 0.082 0.918 33 H 0.059 0.941 34 H 0.115 0.885 35 H 0.080 0.920 36 H 0.102 0.898 37 H 0.123 0.877 38 H 0.125 0.875 39 H 0.255 0.745 40 H 0.068 0.932 41 H 0.081 0.919 42 H 0.111 0.889 43 H 0.112 0.888 44 H 0.062 0.938 45 H 0.061 0.939 46 H 0.070 0.930 47 H 0.069 0.931 48 H 0.063 0.937 49 H 0.056 0.944 50 H 0.068 0.932 51 H 0.099 0.901 52 H 0.087 0.913 53 H 0.109 0.891 54 H 0.083 0.917 55 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -6.895 -18.108 29.695 35.458 hybrid contribution 0.208 -0.011 -1.396 1.411 sum -6.686 -18.119 28.299 34.262 Atomic orbital electron populations 1.21828 0.95620 1.01783 1.01301 1.21125 0.95329 0.95737 0.98483 1.21481 0.95778 0.96657 1.01012 1.21658 0.95983 1.00922 0.96642 1.22379 0.98516 0.91879 0.84784 1.88062 1.46480 1.75505 1.20083 1.22351 0.94204 1.01305 0.85541 1.20964 0.84692 0.80422 0.84547 1.90717 1.24048 1.46928 1.84054 1.45789 1.25324 1.55023 1.10421 1.21238 0.96438 0.96151 0.84943 1.21227 0.94663 1.00994 0.92809 1.22024 0.95447 1.00055 0.98205 1.21143 0.94406 0.97430 0.85378 1.44504 1.16600 1.46043 1.27531 1.18870 1.23499 1.05640 0.89710 0.93354 1.25953 1.00883 0.99438 0.97157 1.69982 1.54170 1.27048 1.09408 0.85858 0.77800 0.81981 0.76464 1.20323 1.24223 1.18081 1.21388 0.85772 0.96515 0.96788 1.21890 0.98473 1.00761 0.95014 1.22036 0.96035 0.96162 1.03332 1.21462 0.95846 0.99870 0.97604 0.94285 0.92120 0.92234 0.90017 0.91767 0.94085 0.88497 0.92001 0.89814 0.87691 0.87535 0.74469 0.93166 0.91922 0.88915 0.88819 0.93754 0.93935 0.93006 0.93074 0.93737 0.94365 0.93150 0.90097 0.91342 0.89138 0.91684 0.94007 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.02 9.19 71.98 0.66 -1.36 16 2 C -0.09 -1.16 2.72 -10.79 -0.03 -1.19 16 3 C -0.11 -1.73 5.06 30.59 0.15 -1.58 16 4 C -0.11 -1.40 5.66 30.59 0.17 -1.23 16 5 C 0.08 1.00 2.92 30.59 0.09 1.09 16 6 O -0.38 -7.51 8.17 -129.94 -1.06 -8.57 16 7 C 0.05 0.65 6.23 71.24 0.44 1.10 16 8 C 0.51 11.55 7.91 87.66 0.69 12.25 16 9 O -0.58 -19.81 16.50 16.00 0.26 -19.55 16 10 N -0.71 -13.06 5.27 -463.07 -2.44 -15.50 16 11 C 0.14 3.21 5.07 86.38 0.44 3.64 16 12 C -0.08 -1.93 2.19 -10.66 -0.02 -1.95 16 13 C -0.12 -3.15 5.27 30.78 0.16 -2.99 16 14 C 0.14 4.92 6.50 86.36 0.56 5.48 16 15 N -0.62 -28.27 2.77 -699.10 -1.94 -30.21 16 16 C -0.25 -14.00 10.03 84.03 0.84 -13.16 16 17 H 0.05 3.01 8.06 -2.91 -0.02 2.99 16 18 C -0.04 -2.34 5.23 84.86 0.44 -1.90 16 19 N -0.96 -60.91 13.97 21.65 0.30 -60.61 16 20 Si 0.95 46.41 24.34 68.60 1.67 48.08 16 21 H -0.28 -12.82 6.62 99.48 0.66 -12.16 16 22 H -0.31 -15.64 7.11 99.48 0.71 -14.93 16 23 H -0.26 -11.75 6.64 99.48 0.66 -11.09 16 24 C 0.12 4.87 4.21 86.36 0.36 5.24 16 25 C -0.12 -3.86 5.36 30.67 0.16 -3.70 16 26 C -0.14 -1.42 5.63 30.60 0.17 -1.25 16 27 C -0.11 -1.56 5.06 30.59 0.15 -1.41 16 28 H 0.04 0.66 8.14 -2.39 -0.02 0.64 16 29 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 30 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 31 H 0.08 0.82 8.14 -2.39 -0.02 0.80 16 32 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 33 H 0.04 0.92 7.68 -2.39 -0.02 0.90 16 34 H 0.10 0.73 8.14 -2.39 -0.02 0.71 16 35 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 36 H 0.08 0.64 7.79 -2.39 -0.02 0.62 16 37 H 0.11 0.91 7.87 -2.39 -0.02 0.89 16 38 H 0.11 0.93 8.09 -2.38 -0.02 0.91 16 39 H 0.42 4.74 7.65 -92.71 -0.71 4.03 16 40 H 0.05 1.39 8.14 -2.39 -0.02 1.37 16 41 H 0.06 1.55 8.14 -2.39 -0.02 1.53 16 42 H 0.09 1.98 8.14 -2.38 -0.02 1.96 16 43 H 0.09 1.74 7.16 -2.38 -0.02 1.73 16 44 H 0.04 1.38 8.14 -2.39 -0.02 1.36 16 45 H 0.04 1.33 8.14 -2.39 -0.02 1.32 16 46 H 0.05 1.89 7.93 -2.39 -0.02 1.87 16 47 H 0.26 15.72 8.31 -92.71 -0.77 14.95 16 48 H 0.04 2.06 4.50 -2.39 -0.01 2.05 16 49 H 0.04 1.46 7.07 -2.39 -0.02 1.44 16 50 H 0.05 1.77 8.14 -2.39 -0.02 1.75 16 51 H 0.08 2.18 8.14 -2.39 -0.02 2.16 16 52 H 0.07 0.63 7.87 -2.39 -0.02 0.62 16 53 H 0.09 0.60 8.14 -2.39 -0.02 0.58 16 54 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 55 H 0.04 0.85 7.68 -2.39 -0.02 0.83 16 Total: -1.00 -77.88 413.55 2.30 -75.58 By element: Atomic # 1 Polarization: 13.65 SS G_CDS: 0.04 Total: 13.69 kcal Atomic # 6 Polarization: -8.39 SS G_CDS: 5.47 Total: -2.92 kcal Atomic # 7 Polarization: -102.24 SS G_CDS: -4.08 Total: -106.31 kcal Atomic # 8 Polarization: -27.32 SS G_CDS: -0.80 Total: -28.12 kcal Atomic # 14 Polarization: 46.41 SS G_CDS: 1.67 Total: 48.08 kcal Total: -77.88 2.30 -75.58 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331049653.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.819 kcal (2) G-P(sol) polarization free energy of solvation -77.877 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.696 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.298 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.579 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.398 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.30 seconds