Wall clock time and date at job start Tue Mar 31 2020 21:11:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86804 * 120.00066 * 2 1 4 4 H 1.48499 * 109.47087 * 272.94159 * 3 2 1 5 5 H 1.48498 * 109.47084 * 32.94642 * 3 2 1 6 6 H 1.48499 * 109.46686 * 152.94590 * 3 2 1 7 7 C 1.38814 * 119.99689 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99962 * 339.34148 * 7 2 1 9 9 N 1.36936 * 119.99683 * 159.34131 * 7 2 1 10 10 C 1.46927 * 120.63430 * 332.63072 * 9 7 2 11 11 C 1.53184 * 108.77621 * 233.58558 * 10 9 7 12 12 C 1.53043 * 109.31384 * 305.36460 * 11 10 9 13 13 C 1.52995 * 109.46068 * 181.38442 * 12 11 10 14 14 N 1.46503 * 109.47090 * 174.97175 * 13 12 11 15 15 C 1.34782 * 119.99946 * 180.02562 * 14 13 12 16 16 O 1.21276 * 119.99846 * 359.97438 * 15 14 13 17 17 C 1.50699 * 119.99981 * 180.02562 * 15 14 13 18 18 C 1.52998 * 109.47207 * 180.02562 * 17 15 14 19 19 C 1.53005 * 109.46979 * 179.97438 * 18 17 15 20 20 C 1.53005 * 109.46841 * 179.97438 * 19 18 17 21 21 C 1.53181 * 109.54075 * 65.44499 * 20 19 18 22 22 C 1.53091 * 109.16163 * 176.84763 * 21 20 19 23 23 O 1.42910 * 109.41184 * 302.39112 * 22 21 20 24 24 C 1.42901 * 114.09779 * 61.16058 * 23 22 21 25 25 C 1.53092 * 109.41357 * 298.83957 * 24 23 22 26 26 C 1.53043 * 109.52472 * 61.37036 * 12 11 10 27 27 C 1.46929 * 120.62862 * 152.60354 * 9 7 2 28 28 H 0.97002 * 119.99461 * 0.02562 * 1 2 3 29 29 H 1.09001 * 109.58244 * 113.79962 * 10 9 7 30 30 H 1.08993 * 109.70068 * 353.44323 * 10 9 7 31 31 H 1.08996 * 109.49982 * 185.41261 * 11 10 9 32 32 H 1.09002 * 109.49792 * 65.31081 * 11 10 9 33 33 H 1.09001 * 109.46277 * 301.35811 * 12 11 10 34 34 H 1.09008 * 109.47434 * 54.97391 * 13 12 11 35 35 H 1.09000 * 109.47696 * 294.97004 * 13 12 11 36 36 H 0.96998 * 120.00201 * 0.02562 * 14 13 12 37 37 H 1.09000 * 109.47404 * 59.99182 * 17 15 14 38 38 H 1.09010 * 109.46868 * 299.99854 * 17 15 14 39 39 H 1.08998 * 109.47218 * 59.99364 * 18 17 15 40 40 H 1.09003 * 109.46634 * 299.99102 * 18 17 15 41 41 H 1.08999 * 109.46713 * 60.00031 * 19 18 17 42 42 H 1.08994 * 109.46943 * 299.99540 * 19 18 17 43 43 H 1.08999 * 109.61645 * 305.22669 * 20 19 18 44 44 H 1.08998 * 109.52195 * 296.75241 * 21 20 19 45 45 H 1.08990 * 109.52215 * 56.94262 * 21 20 19 46 46 H 1.08998 * 109.48263 * 182.40846 * 22 21 20 47 47 H 1.08999 * 109.48092 * 62.36873 * 22 21 20 48 48 H 1.09001 * 109.48200 * 178.85746 * 24 23 22 49 49 H 1.09000 * 109.48965 * 58.82981 * 24 23 22 50 50 H 1.09000 * 109.52369 * 297.70291 * 25 24 23 51 51 H 1.09003 * 109.52020 * 177.51999 * 25 24 23 52 52 H 1.08996 * 109.49882 * 58.58367 * 26 12 11 53 53 H 1.09001 * 109.49522 * 178.67830 * 26 12 11 54 54 H 1.08993 * 109.59388 * 246.20256 * 27 9 7 55 55 H 1.09004 * 109.58793 * 6.48850 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 2.4355 2.0824 -1.3982 5 1 1.4803 2.6339 0.7614 6 1 3.5776 1.4229 0.6368 7 6 2.0102 -1.2022 -0.0005 8 1 1.5223 -2.1076 0.3290 9 7 3.3135 -1.2401 -0.4190 10 6 3.8173 -0.2584 -1.3891 11 6 4.4621 -1.0077 -2.5593 12 6 5.5289 -1.9643 -2.0215 13 6 6.1991 -2.6894 -3.1902 14 7 7.2999 -3.5144 -2.6864 15 6 8.0389 -4.2478 -3.5423 16 8 7.7922 -4.2251 -4.7295 17 6 9.1708 -5.0969 -3.0239 18 6 9.8420 -5.8209 -4.1928 19 6 10.9917 -6.6825 -3.6665 20 6 11.6624 -7.4070 -4.8354 21 6 12.3278 -6.3823 -5.7594 22 6 13.0624 -7.1202 -6.8817 23 8 14.0198 -8.0163 -6.3138 24 6 13.4501 -9.0258 -5.4781 25 6 12.7311 -8.3644 -4.2993 26 6 4.8748 -2.9899 -1.0928 27 6 4.2350 -2.2631 0.0942 28 1 -0.4849 0.8401 -0.0004 29 1 4.5597 0.3803 -0.9106 30 1 2.9923 0.3520 -1.7562 31 1 4.9246 -0.2921 -3.2390 32 1 3.6995 -1.5758 -3.0920 33 1 6.2780 -1.3986 -1.4675 34 1 6.5883 -1.9567 -3.8973 35 1 5.4685 -3.3248 -3.6908 36 1 7.4969 -3.5328 -1.7368 37 1 8.7813 -5.8299 -2.3174 38 1 9.9014 -4.4618 -2.5227 39 1 10.2316 -5.0876 -4.8989 40 1 9.1116 -6.4560 -4.6943 41 1 10.6023 -7.4157 -2.9603 42 1 11.7218 -6.0472 -3.1653 43 1 10.9151 -7.9704 -5.3940 44 1 11.5667 -5.7309 -6.1889 45 1 13.0395 -5.7857 -5.1890 46 1 13.5734 -6.3977 -7.5181 47 1 12.3442 -7.6847 -7.4764 48 1 14.2405 -9.6761 -5.1032 49 1 12.7371 -9.6153 -6.0544 50 1 13.4510 -7.8078 -3.6994 51 1 12.2585 -9.1306 -3.6847 52 1 4.1083 -3.5391 -1.6395 53 1 5.6311 -3.6853 -0.7286 54 1 5.0115 -1.7879 0.6936 55 1 3.6845 -2.9759 0.7082 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000336977887.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:11:28 Heat of formation + Delta-G solvation = -120.508556 kcal Electronic energy + Delta-G solvation = -29167.855640 eV Core-core repulsion = 25202.812312 eV Total energy + Delta-G solvation = -3965.043329 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.30 seconds Orbital eigenvalues (eV) -40.91058 -40.34101 -39.54203 -36.91270 -36.38386 -34.51468 -33.64191 -32.80023 -31.98657 -31.87385 -29.46790 -28.08021 -25.76882 -24.88037 -24.43383 -24.07223 -22.80769 -22.11720 -21.27692 -20.92715 -20.70852 -18.79414 -17.95798 -17.27983 -17.11110 -17.01098 -16.85044 -16.69415 -16.05751 -15.88335 -15.58565 -15.42058 -15.23836 -15.14128 -14.82288 -14.72509 -14.47847 -14.41281 -13.92182 -13.82543 -13.64849 -13.42586 -13.24328 -12.95582 -12.73934 -12.65633 -12.54592 -12.39207 -12.24924 -12.20586 -12.11984 -11.81728 -11.73658 -11.59529 -11.58849 -11.31045 -11.20209 -11.16049 -11.13996 -10.84858 -10.65069 -10.39040 -10.03545 -8.91599 -8.16477 -5.47551 1.30333 1.41080 1.50482 1.71600 2.28248 2.42051 2.98853 3.06220 3.37975 3.67292 3.77618 3.79055 3.85324 3.87833 3.94125 3.99540 4.10724 4.18891 4.25303 4.33508 4.38222 4.44291 4.52373 4.52992 4.54790 4.62899 4.65943 4.74159 4.74915 4.77214 4.78719 4.80576 4.86960 4.88961 4.97054 5.01333 5.03756 5.09875 5.13047 5.15947 5.16999 5.21040 5.21530 5.27784 5.31830 5.43852 5.48915 5.55254 5.61547 5.87714 6.13001 6.28107 6.63105 6.93825 7.33105 7.64511 8.04400 9.03600 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.039405 B = 0.001514 C = 0.001491 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 710.397416 B =18487.413055 C =18770.878135 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.959 5.959 2 C -0.038 4.038 3 Si 0.950 3.050 4 H -0.276 1.276 5 H -0.313 1.313 6 H -0.257 1.257 7 C -0.249 4.249 8 H 0.049 0.951 9 N -0.622 5.622 10 C 0.120 3.880 11 C -0.122 4.122 12 C -0.079 4.079 13 C 0.134 3.866 14 N -0.718 5.718 15 C 0.504 3.496 16 O -0.593 6.593 17 C -0.133 4.133 18 C -0.102 4.102 19 C -0.105 4.105 20 C -0.091 4.091 21 C -0.151 4.151 22 C 0.055 3.945 23 O -0.407 6.407 24 C 0.052 3.948 25 C -0.147 4.147 26 C -0.117 4.117 27 C 0.141 3.859 28 H 0.261 0.739 29 H 0.038 0.962 30 H 0.045 0.955 31 H 0.080 0.920 32 H 0.050 0.950 33 H 0.090 0.910 34 H 0.061 0.939 35 H 0.048 0.952 36 H 0.416 0.584 37 H 0.116 0.884 38 H 0.117 0.883 39 H 0.056 0.944 40 H 0.050 0.950 41 H 0.076 0.924 42 H 0.072 0.928 43 H 0.066 0.934 44 H 0.074 0.926 45 H 0.069 0.931 46 H 0.098 0.902 47 H 0.051 0.949 48 H 0.102 0.898 49 H 0.052 0.948 50 H 0.070 0.930 51 H 0.087 0.913 52 H 0.043 0.957 53 H 0.092 0.908 54 H 0.042 0.958 55 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 30.611 -15.665 -7.590 35.214 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.606 5.606 2 C -0.233 4.233 3 Si 0.779 3.221 4 H -0.203 1.203 5 H -0.242 1.242 6 H -0.182 1.182 7 C -0.379 4.379 8 H 0.067 0.933 9 N -0.346 5.346 10 C -0.005 4.005 11 C -0.161 4.161 12 C -0.098 4.098 13 C 0.010 3.990 14 N -0.370 5.370 15 C 0.292 3.708 16 O -0.474 6.474 17 C -0.173 4.173 18 C -0.140 4.140 19 C -0.142 4.142 20 C -0.110 4.110 21 C -0.188 4.188 22 C -0.021 4.021 23 O -0.327 6.327 24 C -0.024 4.024 25 C -0.184 4.184 26 C -0.156 4.156 27 C 0.017 3.983 28 H 0.069 0.931 29 H 0.055 0.945 30 H 0.063 0.937 31 H 0.099 0.901 32 H 0.068 0.932 33 H 0.109 0.891 34 H 0.079 0.921 35 H 0.067 0.933 36 H 0.253 0.747 37 H 0.134 0.866 38 H 0.135 0.865 39 H 0.075 0.925 40 H 0.069 0.931 41 H 0.095 0.905 42 H 0.091 0.909 43 H 0.085 0.915 44 H 0.092 0.908 45 H 0.087 0.913 46 H 0.116 0.884 47 H 0.070 0.930 48 H 0.121 0.879 49 H 0.071 0.929 50 H 0.088 0.912 51 H 0.105 0.895 52 H 0.062 0.938 53 H 0.110 0.890 54 H 0.060 0.940 55 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 30.504 -15.563 -8.430 35.267 hybrid contribution -1.003 1.035 0.365 1.487 sum 29.501 -14.528 -8.066 33.859 Atomic orbital electron populations 1.69984 1.07535 1.27164 1.55901 1.25939 0.95835 1.01118 1.00371 0.85862 0.78820 0.80013 0.77434 1.20301 1.24172 1.18157 1.18880 0.87105 0.93402 1.38490 0.93345 1.44499 1.07760 1.34818 1.47566 1.21381 0.96677 0.92030 0.90393 1.21893 0.97868 0.98794 0.97557 1.21174 0.96862 0.96231 0.95515 1.21212 0.88333 0.93488 0.95979 1.46015 1.32883 1.46366 1.11761 1.21481 0.83699 0.79690 0.85907 1.90686 1.71494 1.66769 1.18473 1.21741 0.95548 0.99563 1.00405 1.21322 0.97240 0.98611 0.96821 1.21572 0.96681 0.98734 0.97216 1.21214 0.96849 0.96215 0.96691 1.22267 1.00077 0.98633 0.97836 1.22688 0.92010 0.92444 0.94992 1.87898 1.34973 1.44158 1.65663 1.22750 0.98633 0.89825 0.91176 1.22218 0.98245 0.99619 0.98332 1.21949 0.99574 0.97402 0.96704 1.21145 0.92032 0.90439 0.94731 0.93058 0.94455 0.93691 0.90139 0.93156 0.89133 0.92056 0.93314 0.74696 0.86570 0.86459 0.92545 0.93073 0.90487 0.90914 0.91522 0.90790 0.91261 0.88434 0.93029 0.87944 0.92926 0.91172 0.89475 0.93766 0.88990 0.94038 0.92987 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -60.76 13.97 21.65 0.30 -60.46 16 2 C -0.04 -2.24 5.23 84.86 0.44 -1.79 16 3 Si 0.95 46.33 24.35 68.60 1.67 48.00 16 4 H -0.28 -12.78 6.62 99.48 0.66 -12.12 16 5 H -0.31 -15.58 7.11 99.48 0.71 -14.87 16 6 H -0.26 -11.80 6.63 99.48 0.66 -11.14 16 7 C -0.25 -14.09 10.04 84.03 0.84 -13.25 16 8 H 0.05 3.01 8.06 -2.91 -0.02 2.99 16 9 N -0.62 -28.29 2.77 -699.12 -1.94 -30.23 16 10 C 0.12 4.87 4.20 86.36 0.36 5.23 16 11 C -0.12 -3.85 5.36 30.67 0.16 -3.68 16 12 C -0.08 -1.95 2.19 -10.77 -0.02 -1.98 16 13 C 0.13 3.11 5.06 86.38 0.44 3.54 16 14 N -0.72 -12.77 5.27 -463.05 -2.44 -15.22 16 15 C 0.50 10.24 7.83 87.66 0.69 10.93 16 16 O -0.59 -17.94 15.98 -3.02 -0.05 -17.99 16 17 C -0.13 -1.49 5.70 29.85 0.17 -1.32 16 18 C -0.10 -1.36 4.27 30.60 0.13 -1.23 16 19 C -0.10 -0.92 4.69 30.60 0.14 -0.78 16 20 C -0.09 -0.95 2.27 -10.67 -0.02 -0.97 16 21 C -0.15 -1.79 5.10 30.69 0.16 -1.64 16 22 C 0.06 0.71 6.84 72.01 0.49 1.20 16 23 O -0.41 -6.51 10.77 -148.98 -1.60 -8.12 16 24 C 0.05 0.57 6.84 72.01 0.49 1.06 16 25 C -0.15 -1.31 5.42 30.68 0.17 -1.14 16 26 C -0.12 -3.15 5.25 30.67 0.16 -2.99 16 27 C 0.14 4.95 6.52 86.36 0.56 5.51 16 28 H 0.26 15.69 8.31 -92.71 -0.77 14.92 16 29 H 0.04 1.43 7.07 -2.39 -0.02 1.41 16 30 H 0.04 2.07 4.50 -2.39 -0.01 2.06 16 31 H 0.08 2.16 8.14 -2.39 -0.02 2.14 16 32 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16 33 H 0.09 1.97 8.14 -2.39 -0.02 1.95 16 34 H 0.06 1.49 8.14 -2.38 -0.02 1.47 16 35 H 0.05 1.33 8.14 -2.39 -0.02 1.31 16 36 H 0.42 4.83 7.65 -92.71 -0.71 4.12 16 37 H 0.12 0.82 8.14 -2.39 -0.02 0.80 16 38 H 0.12 0.78 8.14 -2.38 -0.02 0.76 16 39 H 0.06 0.93 6.62 -2.39 -0.02 0.91 16 40 H 0.05 0.87 8.10 -2.39 -0.02 0.85 16 41 H 0.08 0.53 8.14 -2.39 -0.02 0.51 16 42 H 0.07 0.56 8.14 -2.39 -0.02 0.54 16 43 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 44 H 0.07 0.94 6.75 -2.39 -0.02 0.92 16 45 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 46 H 0.10 1.09 8.14 -2.39 -0.02 1.07 16 47 H 0.05 0.62 8.14 -2.39 -0.02 0.60 16 48 H 0.10 0.84 8.14 -2.39 -0.02 0.82 16 49 H 0.05 0.52 8.14 -2.39 -0.02 0.50 16 50 H 0.07 0.67 8.14 -2.39 -0.02 0.65 16 51 H 0.09 0.55 8.14 -2.39 -0.02 0.53 16 52 H 0.04 1.38 8.14 -2.39 -0.02 1.36 16 53 H 0.09 1.75 7.15 -2.39 -0.02 1.74 16 54 H 0.04 1.32 8.14 -2.39 -0.02 1.30 16 55 H 0.05 1.91 7.93 -2.38 -0.02 1.89 16 Total: -1.00 -75.32 413.11 1.35 -73.97 By element: Atomic # 1 Polarization: 13.28 SS G_CDS: 0.04 Total: 13.32 kcal Atomic # 6 Polarization: -8.65 SS G_CDS: 5.37 Total: -3.28 kcal Atomic # 7 Polarization: -101.83 SS G_CDS: -4.07 Total: -105.90 kcal Atomic # 8 Polarization: -24.45 SS G_CDS: -1.65 Total: -26.10 kcal Atomic # 14 Polarization: 46.33 SS G_CDS: 1.67 Total: 48.00 kcal Total: -75.32 1.35 -73.97 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336977887.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.540 kcal (2) G-P(sol) polarization free energy of solvation -75.316 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.856 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.348 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.968 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.509 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.30 seconds