Wall clock time and date at job start Tue Mar 31 2020 21:35:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53002 * 110.05929 * 2 1 4 4 C 1.54271 * 110.03059 * 238.58805 * 2 1 3 5 5 C 1.54888 * 104.19399 * 264.32740 * 4 2 1 6 6 C 1.54965 * 102.77924 * 322.08409 * 5 4 2 7 7 C 1.53874 * 110.03543 * 121.42224 * 2 1 3 8 8 H 1.09000 * 110.02979 * 359.94549 * 7 2 1 9 9 C 1.50695 * 110.03273 * 238.56810 * 7 2 1 10 10 O 1.21279 * 119.99814 * 276.54257 * 9 7 2 11 11 N 1.34779 * 120.00340 * 96.26530 * 9 7 2 12 12 C 1.46499 * 119.99826 * 4.50686 * 11 9 7 13 13 C 1.50698 * 109.46923 * 84.56202 * 12 11 9 14 14 H 1.08008 * 120.00164 * 0.02562 * 13 12 11 15 15 C 1.37881 * 120.00318 * 180.02562 * 13 12 11 16 16 N 1.31516 * 119.99630 * 359.97438 * 15 13 12 17 17 Si 1.86796 * 120.00476 * 180.02562 * 15 13 12 18 18 H 1.48502 * 109.47110 * 89.99715 * 17 15 13 19 19 H 1.48493 * 109.47352 * 210.00091 * 17 15 13 20 20 H 1.48508 * 109.46709 * 329.99994 * 17 15 13 21 21 C 1.46500 * 120.00089 * 184.51276 * 11 9 7 22 22 C 1.52999 * 109.47279 * 89.99944 * 21 11 9 23 23 N 1.46896 * 109.46928 * 180.02562 * 22 21 11 24 24 C 1.47020 * 111.00256 * 293.63111 * 23 22 21 25 25 C 1.53096 * 109.26217 * 177.61020 * 24 23 22 26 26 O 1.43011 * 109.25630 * 56.84679 * 25 24 23 27 27 C 1.43010 * 113.74419 * 301.33088 * 26 25 24 28 28 C 1.47012 * 111.00165 * 170.00163 * 23 22 21 29 29 H 1.09003 * 109.46743 * 302.77323 * 1 2 3 30 30 H 1.08997 * 109.47196 * 62.76855 * 1 2 3 31 31 H 1.08995 * 109.47349 * 182.77453 * 1 2 3 32 32 H 1.08996 * 109.46892 * 182.70216 * 3 2 1 33 33 H 1.09003 * 109.47128 * 302.70734 * 3 2 1 34 34 H 1.09005 * 109.46701 * 62.69674 * 3 2 1 35 35 H 1.09006 * 110.48447 * 23.00056 * 4 2 1 36 36 H 1.08992 * 110.48816 * 145.64804 * 4 2 1 37 37 H 1.08999 * 110.75847 * 80.36803 * 5 4 2 38 38 H 1.08998 * 110.75939 * 203.73907 * 5 4 2 39 39 H 1.09008 * 110.47324 * 279.24119 * 6 5 4 40 40 H 1.08998 * 110.53381 * 156.57099 * 6 5 4 41 41 H 1.08994 * 109.47671 * 204.56185 * 12 11 9 42 42 H 1.09007 * 109.47178 * 324.56616 * 12 11 9 43 43 H 0.96999 * 120.00066 * 179.97438 * 16 15 13 44 44 H 1.08998 * 109.46819 * 209.99904 * 21 11 9 45 45 H 1.09002 * 109.47170 * 329.99359 * 21 11 9 46 46 H 1.08998 * 109.47162 * 299.99750 * 22 21 11 47 47 H 1.08998 * 109.47015 * 59.99688 * 22 21 11 48 48 H 1.08999 * 109.50385 * 297.54680 * 24 23 22 49 49 H 1.09002 * 109.50076 * 57.67179 * 24 23 22 50 50 H 1.09003 * 109.50038 * 296.91785 * 25 24 23 51 51 H 1.08998 * 109.54305 * 176.80764 * 25 24 23 52 52 H 1.09002 * 109.50974 * 298.73646 * 27 26 25 53 53 H 1.09000 * 109.54824 * 178.62736 * 27 26 25 54 54 H 1.09009 * 109.50483 * 302.32499 * 28 23 22 55 55 H 1.09003 * 109.51072 * 62.45310 * 28 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0548 1.4372 0.0000 4 6 2.0584 -0.7554 -1.2370 5 6 2.3280 -2.1901 -0.7193 6 6 2.8871 -1.9415 0.7044 7 6 2.0572 -0.7537 1.2336 8 1 1.2230 -1.1186 1.8328 9 6 2.9277 0.1562 2.0614 10 8 4.0960 0.3058 1.7723 11 7 2.4066 0.8082 3.1197 12 6 1.0213 0.5573 3.5250 13 6 0.9712 -0.6551 4.4186 14 1 1.8804 -1.1855 4.6607 15 6 -0.2353 -1.0875 4.9270 16 7 -1.3424 -0.4414 4.6326 17 14 -0.2974 -2.5899 6.0353 18 1 -0.1350 -2.1685 7.4500 19 1 -1.6051 -3.2737 5.8694 20 1 0.7987 -3.5219 5.6674 21 6 3.2253 1.7679 3.8645 22 6 3.0634 3.1604 3.2517 23 7 3.8848 4.1225 3.9982 24 6 3.3833 4.2909 5.3699 25 6 4.3008 5.2534 6.1286 26 8 4.3705 6.4945 5.4214 27 6 4.8557 6.3676 4.0821 28 6 3.9437 5.4163 3.3028 29 1 -0.3633 0.5563 0.8641 30 1 -0.3633 0.4702 -0.9137 31 1 -0.3634 -1.0264 0.0497 32 1 3.1436 1.4264 -0.0484 33 1 1.6578 1.9690 -0.8647 34 1 1.7366 1.9401 0.9132 35 1 1.3060 -0.7695 -2.0256 36 1 2.9810 -0.3001 -1.5967 37 1 1.4030 -2.7651 -0.6753 38 1 3.0674 -2.6931 -1.3425 39 1 3.9438 -1.6779 0.6584 40 1 2.7390 -2.8201 1.3321 41 1 0.6383 1.4229 4.0653 42 1 0.4098 0.3817 2.6398 43 1 -2.1912 -0.7457 4.9900 44 1 2.9031 1.7894 4.9056 45 1 4.2722 1.4683 3.8144 46 1 3.3856 3.1389 2.2106 47 1 2.0165 3.4599 3.3018 48 1 2.3728 4.6984 5.3404 49 1 3.3722 3.3247 5.8745 50 1 5.2986 4.8212 6.2045 51 1 3.9018 5.4259 7.1281 52 1 5.8696 5.9679 4.0986 53 1 4.8578 7.3456 3.6008 54 1 4.3418 5.2719 2.2983 55 1 2.9422 5.8420 3.2402 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000355294487.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:35:25 Heat of formation + Delta-G solvation = -108.857780 kcal Electronic energy + Delta-G solvation = -32281.744130 eV Core-core repulsion = 28317.206017 eV Total energy + Delta-G solvation = -3964.538113 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -41.70636 -40.55108 -38.82892 -37.32906 -36.37630 -34.55249 -33.09969 -32.25791 -31.60683 -29.90041 -29.03498 -28.21961 -27.12834 -25.57504 -25.06382 -24.80603 -23.54945 -21.69880 -21.36791 -20.66898 -19.01591 -18.54580 -17.97410 -17.75417 -17.18197 -16.89043 -16.57268 -16.37571 -16.21084 -16.00738 -15.75519 -15.66039 -15.21415 -14.74211 -14.62048 -14.44515 -14.38987 -14.11770 -13.87969 -13.77552 -13.51532 -13.33565 -13.17208 -12.96227 -12.83150 -12.66076 -12.59775 -12.51399 -12.34970 -12.25108 -12.17083 -11.90220 -11.87505 -11.74630 -11.60005 -11.48745 -11.44525 -11.36042 -11.20704 -10.73864 -10.67080 -10.43795 -9.58263 -9.39119 -8.21548 -6.35879 1.38476 1.41287 1.50188 1.80534 2.17109 2.41033 2.82138 2.96414 3.08537 3.55990 3.64936 3.72542 3.81986 3.88523 3.95912 4.04561 4.16178 4.18453 4.30109 4.35454 4.37355 4.41126 4.42728 4.45006 4.53071 4.55497 4.68578 4.69404 4.76607 4.77861 4.79861 4.82288 4.82982 4.87681 4.91110 4.94659 4.98724 5.01698 5.05329 5.10194 5.16038 5.22451 5.26129 5.35068 5.41476 5.51814 5.58920 5.65298 5.75960 5.88926 5.91278 6.06230 6.13981 6.56432 6.82097 7.32130 7.44803 8.83543 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.008607 B = 0.004366 C = 0.003227 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3252.571385 B = 6411.808849 C = 8675.690989 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.049 4.049 3 C -0.142 4.142 4 C -0.106 4.106 5 C -0.113 4.113 6 C -0.113 4.113 7 C -0.111 4.111 8 H 0.087 0.913 9 C 0.534 3.466 10 O -0.591 6.591 11 N -0.601 5.601 12 C 0.256 3.744 13 C -0.546 4.546 14 H 0.047 0.953 15 C 0.028 3.972 16 N -0.915 5.915 17 Si 0.950 3.050 18 H -0.276 1.276 19 H -0.278 1.278 20 H -0.273 1.273 21 C 0.127 3.873 22 C 0.064 3.936 23 N -0.538 5.538 24 C 0.012 3.988 25 C 0.069 3.931 26 O -0.402 6.402 27 C 0.066 3.934 28 C 0.017 3.983 29 H 0.037 0.963 30 H 0.076 0.924 31 H 0.057 0.943 32 H 0.049 0.951 33 H 0.075 0.925 34 H 0.036 0.964 35 H 0.088 0.912 36 H 0.066 0.934 37 H 0.074 0.926 38 H 0.084 0.916 39 H 0.064 0.936 40 H 0.059 0.941 41 H 0.012 0.988 42 H 0.038 0.962 43 H 0.268 0.732 44 H 0.069 0.931 45 H 0.069 0.931 46 H 0.069 0.931 47 H 0.025 0.975 48 H 0.033 0.967 49 H 0.086 0.914 50 H 0.065 0.935 51 H 0.115 0.885 52 H 0.064 0.936 53 H 0.120 0.880 54 H 0.093 0.907 55 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.439 6.943 -7.110 11.842 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.050 4.050 3 C -0.199 4.199 4 C -0.143 4.143 5 C -0.150 4.150 6 C -0.151 4.151 7 C -0.133 4.133 8 H 0.105 0.895 9 C 0.324 3.676 10 O -0.474 6.474 11 N -0.331 5.331 12 C 0.135 3.865 13 C -0.585 4.585 14 H 0.065 0.935 15 C -0.173 4.173 16 N -0.554 5.554 17 Si 0.776 3.224 18 H -0.201 1.201 19 H -0.203 1.203 20 H -0.197 1.197 21 C 0.003 3.997 22 C -0.065 4.065 23 N -0.264 5.264 24 C -0.117 4.117 25 C -0.008 4.008 26 O -0.321 6.321 27 C -0.010 4.010 28 C -0.111 4.111 29 H 0.056 0.944 30 H 0.095 0.905 31 H 0.076 0.924 32 H 0.068 0.932 33 H 0.093 0.907 34 H 0.055 0.945 35 H 0.107 0.893 36 H 0.085 0.915 37 H 0.093 0.907 38 H 0.102 0.898 39 H 0.083 0.917 40 H 0.078 0.922 41 H 0.030 0.970 42 H 0.056 0.944 43 H 0.077 0.923 44 H 0.088 0.912 45 H 0.088 0.912 46 H 0.087 0.913 47 H 0.044 0.956 48 H 0.052 0.948 49 H 0.105 0.895 50 H 0.083 0.917 51 H 0.133 0.867 52 H 0.082 0.918 53 H 0.138 0.862 54 H 0.112 0.888 55 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges 7.245 7.034 -7.087 12.337 hybrid contribution -1.229 -0.750 1.022 1.765 sum 6.016 6.284 -6.065 10.605 Atomic orbital electron populations 1.21886 0.93373 1.01994 1.01703 1.21024 0.95817 0.94801 0.93313 1.22022 1.00657 0.95772 1.01493 1.22456 1.01194 0.94757 0.95908 1.22455 1.01276 0.97057 0.94213 1.22343 0.99365 0.95719 0.97689 1.22173 0.98573 0.95882 0.96624 0.89459 1.20646 0.87355 0.79645 0.79919 1.90537 1.18412 1.66954 1.71477 1.48174 1.14971 1.40553 1.29383 1.19096 0.76936 0.95108 0.95340 1.21636 0.93267 1.12887 1.30701 0.93502 1.25552 0.95046 0.99384 0.97309 1.69997 0.98823 1.41191 1.45364 0.85671 0.77619 0.79832 0.79297 1.20134 1.20336 1.19733 1.21162 0.95758 0.87597 0.95173 1.22206 0.94562 0.91934 0.97800 1.62162 1.51835 1.09739 1.02651 1.22912 0.97382 1.01267 0.90090 1.22730 0.99261 0.83307 0.95505 1.87940 1.86800 1.30867 1.26485 1.22785 0.96389 1.00151 0.81706 1.22870 0.99849 0.89105 0.99281 0.94392 0.90519 0.92422 0.93157 0.90655 0.94461 0.89328 0.91480 0.90732 0.89758 0.91702 0.92205 0.96990 0.94372 0.92308 0.91250 0.91209 0.91259 0.95646 0.94840 0.89543 0.91679 0.86680 0.91797 0.86164 0.88820 0.94583 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.94 7.96 71.98 0.57 -3.37 16 2 C -0.05 -1.51 0.94 -51.45 -0.05 -1.55 16 3 C -0.14 -4.43 7.22 71.98 0.52 -3.91 16 4 C -0.11 -2.62 5.90 31.67 0.19 -2.43 16 5 C -0.11 -2.82 6.91 31.91 0.22 -2.60 16 6 C -0.11 -3.75 6.32 31.69 0.20 -3.55 16 7 C -0.11 -4.17 2.20 -10.82 -0.02 -4.19 16 8 H 0.09 3.75 5.37 -2.39 -0.01 3.74 16 9 C 0.53 22.42 4.49 87.66 0.39 22.82 16 10 O -0.59 -26.64 14.35 -3.03 -0.04 -26.68 16 11 N -0.60 -25.65 2.15 -826.17 -1.77 -27.42 16 12 C 0.26 12.23 4.79 85.63 0.41 12.64 16 13 C -0.55 -28.50 8.75 25.60 0.22 -28.28 16 14 H 0.05 2.53 7.81 -2.91 -0.02 2.51 16 15 C 0.03 1.46 5.46 84.66 0.46 1.92 16 16 N -0.91 -49.60 13.29 21.45 0.28 -49.32 16 17 Si 0.95 41.70 29.54 68.60 2.03 43.73 16 18 H -0.28 -11.89 7.11 99.48 0.71 -11.18 16 19 H -0.28 -11.86 7.11 99.48 0.71 -11.16 16 20 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 21 C 0.13 4.88 5.35 86.38 0.46 5.34 16 22 C 0.06 2.14 5.28 86.30 0.46 2.59 16 23 N -0.54 -15.43 4.73 -895.20 -4.23 -19.66 16 24 C 0.01 0.31 5.44 86.31 0.47 0.78 16 25 C 0.07 1.53 7.01 72.01 0.50 2.04 16 26 O -0.40 -9.74 10.83 -148.98 -1.61 -11.35 16 27 C 0.07 1.34 7.01 72.02 0.50 1.85 16 28 C 0.02 0.40 5.64 86.32 0.49 0.89 16 29 H 0.04 1.33 6.55 -2.39 -0.02 1.31 16 30 H 0.08 1.84 8.14 -2.39 -0.02 1.82 16 31 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16 32 H 0.05 1.71 6.82 -2.39 -0.02 1.69 16 33 H 0.07 1.93 8.14 -2.39 -0.02 1.91 16 34 H 0.04 1.29 7.19 -2.38 -0.02 1.27 16 35 H 0.09 1.78 7.84 -2.38 -0.02 1.76 16 36 H 0.07 1.66 7.82 -2.39 -0.02 1.64 16 37 H 0.07 1.75 8.14 -2.39 -0.02 1.73 16 38 H 0.08 1.77 8.14 -2.39 -0.02 1.75 16 39 H 0.06 2.32 6.94 -2.38 -0.02 2.30 16 40 H 0.06 1.99 8.14 -2.39 -0.02 1.97 16 41 H 0.01 0.61 8.03 -2.39 -0.02 0.60 16 42 H 0.04 1.88 4.74 -2.38 -0.01 1.87 16 43 H 0.27 13.78 8.31 -92.71 -0.77 13.01 16 44 H 0.07 2.68 6.45 -2.39 -0.02 2.67 16 45 H 0.07 2.82 7.37 -2.39 -0.02 2.81 16 46 H 0.07 2.39 8.04 -2.39 -0.02 2.37 16 47 H 0.03 0.90 8.12 -2.39 -0.02 0.88 16 48 H 0.03 0.96 8.14 -2.39 -0.02 0.94 16 49 H 0.09 2.40 6.38 -2.39 -0.02 2.38 16 50 H 0.06 1.38 8.14 -2.39 -0.02 1.37 16 51 H 0.12 2.12 8.14 -2.39 -0.02 2.10 16 52 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 53 H 0.12 1.81 8.14 -2.39 -0.02 1.79 16 54 H 0.09 2.04 8.09 -2.38 -0.02 2.02 16 55 H 0.04 0.90 8.14 -2.39 -0.02 0.88 16 Total: -1.00 -60.74 412.44 1.49 -59.25 By element: Atomic # 1 Polarization: 29.62 SS G_CDS: 0.84 Total: 30.46 kcal Atomic # 6 Polarization: -5.02 SS G_CDS: 6.00 Total: 0.98 kcal Atomic # 7 Polarization: -90.67 SS G_CDS: -5.72 Total: -96.40 kcal Atomic # 8 Polarization: -36.37 SS G_CDS: -1.66 Total: -38.03 kcal Atomic # 14 Polarization: 41.70 SS G_CDS: 2.03 Total: 43.73 kcal Total: -60.74 1.49 -59.25 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000355294487.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.607 kcal (2) G-P(sol) polarization free energy of solvation -60.744 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.351 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.494 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.250 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.858 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds