Wall clock time and date at job start Tue Mar 31 2020 20:41:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86799 * 120.00125 * 2 1 4 4 H 1.48498 * 109.47317 * 270.00013 * 3 2 1 5 5 H 1.48503 * 109.46838 * 30.00205 * 3 2 1 6 6 H 1.48505 * 109.46812 * 150.00028 * 3 2 1 7 7 C 1.37879 * 119.99660 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99646 * 180.02562 * 7 2 1 9 9 C 1.50702 * 120.00353 * 359.97438 * 7 2 1 10 10 C 1.52998 * 109.46964 * 180.02562 * 9 7 2 11 11 C 1.50700 * 109.46731 * 180.02562 * 10 9 7 12 12 O 1.21281 * 120.00408 * 359.97438 * 11 10 9 13 13 N 1.34779 * 120.00090 * 180.27695 * 11 10 9 14 14 C 1.46498 * 120.00110 * 179.72392 * 13 11 10 15 15 C 1.53004 * 109.46895 * 174.43035 * 14 13 11 16 16 C 1.52998 * 109.47257 * 301.80156 * 15 14 13 17 17 N 1.46900 * 109.47141 * 180.38382 * 16 15 14 18 18 C 1.47014 * 111.00002 * 267.47869 * 17 16 15 19 19 C 1.53104 * 109.25847 * 177.60661 * 18 17 16 20 20 O 1.43013 * 109.25633 * 56.84520 * 19 18 17 21 21 C 1.43012 * 113.74142 * 301.33368 * 20 19 18 22 22 C 1.47012 * 111.00189 * 143.84218 * 17 16 15 23 23 C 1.53005 * 109.46848 * 181.79966 * 15 14 13 24 24 C 1.52998 * 109.47347 * 300.00135 * 23 15 14 25 25 C 1.52997 * 109.47064 * 300.00053 * 24 23 15 26 26 C 1.53007 * 109.47117 * 60.00176 * 25 24 23 27 27 C 1.52993 * 109.46999 * 299.99507 * 26 25 24 28 28 H 0.97005 * 119.99962 * 0.02562 * 1 2 3 29 29 H 1.08997 * 109.46563 * 60.00187 * 9 7 2 30 30 H 1.09002 * 109.47084 * 300.00567 * 9 7 2 31 31 H 1.08997 * 109.47710 * 60.00422 * 10 9 7 32 32 H 1.09002 * 109.47301 * 299.99967 * 10 9 7 33 33 H 0.96997 * 119.99632 * 359.71731 * 13 11 10 34 34 H 1.08993 * 109.47035 * 294.43004 * 14 13 11 35 35 H 1.08998 * 109.47299 * 54.43553 * 14 13 11 36 36 H 1.08997 * 109.47256 * 300.38026 * 16 15 14 37 37 H 1.08998 * 109.47381 * 60.38448 * 16 15 14 38 38 H 1.08990 * 109.50810 * 297.54017 * 18 17 16 39 39 H 1.09007 * 109.50707 * 57.67665 * 18 17 16 40 40 H 1.09004 * 109.50386 * 296.91381 * 19 18 17 41 41 H 1.08997 * 109.50779 * 176.78733 * 19 18 17 42 42 H 1.08997 * 109.50560 * 298.73065 * 21 20 19 43 43 H 1.09000 * 109.54292 * 178.62907 * 21 20 19 44 44 H 1.09003 * 109.50594 * 302.32843 * 22 17 16 45 45 H 1.08997 * 109.50670 * 62.41754 * 22 17 16 46 46 H 1.09001 * 109.46698 * 60.00467 * 23 15 14 47 47 H 1.09006 * 109.46559 * 180.02562 * 23 15 14 48 48 H 1.08994 * 109.46934 * 179.97438 * 24 23 15 49 49 H 1.09007 * 109.47000 * 59.99988 * 24 23 15 50 50 H 1.08998 * 109.47678 * 300.00075 * 25 24 23 51 51 H 1.09007 * 109.47234 * 179.97438 * 25 24 23 52 52 H 1.09001 * 109.46733 * 179.97438 * 26 25 24 53 53 H 1.08993 * 109.47455 * 59.99934 * 26 25 24 54 54 H 1.09001 * 109.47661 * 300.00578 * 27 26 25 55 55 H 1.08994 * 109.47623 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4000 5 1 1.4465 2.6526 0.7001 6 1 3.5467 1.4400 0.7001 7 6 2.0044 -1.1941 -0.0005 8 1 3.0844 -1.1941 -0.0001 9 6 1.2509 -2.4992 -0.0005 10 6 2.2452 -3.6621 -0.0005 11 6 1.4916 -4.9672 -0.0012 12 8 0.2788 -4.9672 -0.0011 13 7 2.1654 -6.1344 0.0044 14 6 1.4329 -7.4031 0.0099 15 6 2.4213 -8.5633 -0.1245 16 6 3.2249 -8.4016 -1.4164 17 7 4.1675 -9.5204 -1.5500 18 6 5.4747 -9.1802 -0.9697 19 6 6.4052 -10.3913 -1.0765 20 8 6.5077 -10.7879 -2.4467 21 6 5.2531 -11.1269 -3.0434 22 6 4.3109 -9.9234 -2.9565 23 6 1.6529 -9.8858 -0.1639 24 6 0.8493 -10.0475 1.1279 25 6 1.8023 -10.0468 2.3248 26 6 2.5706 -8.7242 2.3643 27 6 3.3743 -8.5626 1.0725 28 1 -0.4850 0.8401 -0.0004 29 1 0.6240 -2.5567 -0.8903 30 1 0.6245 -2.5571 0.8896 31 1 2.8718 -3.6045 0.8894 32 1 2.8718 -3.6044 -0.8905 33 1 3.1354 -6.1344 0.0046 34 1 0.8828 -7.5009 0.9457 35 1 0.7339 -7.4227 -0.8262 36 1 2.5454 -8.3953 -2.2686 37 1 3.7776 -7.4626 -1.3854 38 1 5.9067 -8.3402 -1.5134 39 1 5.3482 -8.9097 0.0787 40 1 5.9997 -11.2147 -0.4885 41 1 7.3928 -10.1258 -0.6994 42 1 4.8141 -11.9718 -2.5127 43 1 5.4069 -11.3941 -4.0889 44 1 3.3349 -10.1954 -3.3586 45 1 4.7237 -9.0950 -3.5322 46 1 0.9740 -9.8863 -1.0167 47 1 2.3572 -10.7124 -0.2592 48 1 0.3016 -10.9894 1.0996 49 1 0.1451 -9.2209 1.2237 50 1 2.5065 -10.8733 2.2292 51 1 1.2297 -10.1615 3.2453 52 1 3.2492 -8.7236 3.2173 53 1 1.8666 -7.8977 2.4600 54 1 4.0784 -9.3891 0.9767 55 1 3.9220 -7.6207 1.1007 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000360331027.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:41:28 Heat of formation + Delta-G solvation = -124.082833 kcal Electronic energy + Delta-G solvation = -31216.003598 eV Core-core repulsion = 27250.805277 eV Total energy + Delta-G solvation = -3965.198321 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -41.62167 -40.42205 -39.59573 -36.54417 -35.68240 -35.43349 -33.15941 -32.43006 -32.30295 -31.42825 -28.89458 -28.14911 -26.54726 -25.17501 -25.03033 -23.66461 -23.21780 -21.84662 -21.36271 -21.14944 -19.55655 -18.76662 -17.60466 -17.29684 -17.13588 -16.87127 -16.71487 -16.42718 -16.38573 -16.04320 -15.87290 -15.53068 -15.41403 -15.00546 -14.76028 -14.53650 -14.39748 -14.15640 -14.03305 -13.82371 -13.48683 -13.23533 -13.17368 -12.96561 -12.82684 -12.70012 -12.63933 -12.48483 -12.27794 -12.09768 -11.95788 -11.93060 -11.77701 -11.64579 -11.46048 -11.31426 -11.07965 -11.05914 -10.83638 -10.68857 -10.58019 -10.48969 -9.98712 -9.32072 -8.18904 -6.33052 1.41053 1.43877 1.54803 1.73469 2.28407 2.44972 2.72485 3.01860 3.14034 3.64333 3.68819 3.84075 3.97761 4.04835 4.07896 4.11735 4.18060 4.25323 4.31987 4.34452 4.37623 4.46261 4.49337 4.53533 4.56838 4.59677 4.63402 4.71082 4.74847 4.76910 4.80429 4.82099 4.88830 4.90619 4.94498 5.06449 5.07994 5.14293 5.21120 5.25299 5.38376 5.39895 5.44782 5.46328 5.49616 5.56545 5.62430 5.68314 5.84722 5.97601 6.00508 6.16828 6.24088 6.60589 6.85546 7.35643 7.37908 8.93830 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.012807 B = 0.002528 C = 0.002271 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2185.790983 B =11073.565156 C =12327.463546 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.938 5.938 2 C -0.007 4.007 3 Si 0.974 3.026 4 H -0.272 1.272 5 H -0.286 1.286 6 H -0.255 1.255 7 C -0.543 4.543 8 H 0.075 0.925 9 C 0.043 3.957 10 C -0.120 4.120 11 C 0.510 3.490 12 O -0.590 6.590 13 N -0.714 5.714 14 C 0.126 3.874 15 C -0.043 4.043 16 C 0.065 3.935 17 N -0.524 5.524 18 C 0.005 3.995 19 C 0.062 3.938 20 O -0.409 6.409 21 C 0.065 3.935 22 C 0.017 3.983 23 C -0.087 4.087 24 C -0.127 4.127 25 C -0.112 4.112 26 C -0.124 4.124 27 C -0.107 4.107 28 H 0.263 0.737 29 H -0.019 1.019 30 H -0.018 1.018 31 H 0.103 0.897 32 H 0.101 0.899 33 H 0.410 0.590 34 H 0.061 0.939 35 H 0.047 0.953 36 H 0.066 0.934 37 H 0.045 0.955 38 H 0.033 0.967 39 H 0.109 0.891 40 H 0.065 0.935 41 H 0.108 0.892 42 H 0.065 0.935 43 H 0.107 0.893 44 H 0.094 0.906 45 H 0.031 0.969 46 H 0.053 0.947 47 H 0.088 0.912 48 H 0.069 0.931 49 H 0.045 0.955 50 H 0.073 0.927 51 H 0.056 0.944 52 H 0.068 0.932 53 H 0.042 0.958 54 H 0.092 0.908 55 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.054 -28.703 -0.816 31.969 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.205 4.205 3 Si 0.797 3.203 4 H -0.197 1.197 5 H -0.212 1.212 6 H -0.179 1.179 7 C -0.581 4.581 8 H 0.093 0.907 9 C 0.005 3.995 10 C -0.159 4.159 11 C 0.298 3.702 12 O -0.470 6.470 13 N -0.368 5.368 14 C 0.003 3.997 15 C -0.044 4.044 16 C -0.064 4.064 17 N -0.249 5.249 18 C -0.123 4.123 19 C -0.014 4.014 20 O -0.328 6.328 21 C -0.012 4.012 22 C -0.111 4.111 23 C -0.125 4.125 24 C -0.164 4.164 25 C -0.149 4.149 26 C -0.162 4.162 27 C -0.144 4.144 28 H 0.071 0.929 29 H 0.000 1.000 30 H 0.000 1.000 31 H 0.121 0.879 32 H 0.120 0.880 33 H 0.248 0.752 34 H 0.079 0.921 35 H 0.065 0.935 36 H 0.085 0.915 37 H 0.063 0.937 38 H 0.051 0.949 39 H 0.127 0.873 40 H 0.083 0.917 41 H 0.126 0.874 42 H 0.083 0.917 43 H 0.125 0.875 44 H 0.112 0.888 45 H 0.049 0.951 46 H 0.072 0.928 47 H 0.107 0.893 48 H 0.087 0.913 49 H 0.063 0.937 50 H 0.091 0.909 51 H 0.075 0.925 52 H 0.087 0.913 53 H 0.061 0.939 54 H 0.111 0.889 55 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 13.049 -29.031 -0.661 31.835 hybrid contribution -0.048 1.993 -0.407 2.035 sum 13.000 -27.038 -1.067 30.020 Atomic orbital electron populations 1.70179 1.08327 1.27805 1.51480 1.26146 0.95728 1.03969 0.94647 0.85323 0.78693 0.77714 0.78528 1.19711 1.21156 1.17858 1.21714 0.93960 0.91625 1.50766 0.90651 1.18672 0.93684 0.92478 0.94623 1.21627 0.99308 0.90382 1.04617 1.21293 0.87795 0.86793 0.74301 1.90655 1.16715 1.88421 1.51179 1.45953 1.10623 1.04804 1.75426 1.21530 0.94764 0.82274 1.01177 1.20627 0.94524 0.93943 0.95318 1.22145 0.94771 0.91987 0.97449 1.62128 1.09394 1.36850 1.16523 1.23204 0.89248 0.97538 1.02311 1.22781 1.00333 0.95811 0.82497 1.87964 1.30846 1.87417 1.26601 1.22740 0.83272 0.95705 0.99477 1.22865 1.01263 0.98025 0.88952 1.21349 0.98294 0.96158 0.96739 1.21629 0.98023 1.01434 0.95335 1.21467 0.98272 0.97558 0.97634 1.21585 0.99028 0.97585 0.97955 1.21761 0.97512 1.02352 0.92758 0.92854 1.00041 1.00006 0.87904 0.88036 0.75209 0.92074 0.93480 0.91524 0.93698 0.94902 0.87314 0.91661 0.87447 0.91698 0.87522 0.88775 0.95064 0.92788 0.89331 0.91277 0.93666 0.90851 0.92480 0.91305 0.93895 0.88948 0.92237 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -60.07 13.29 21.45 0.28 -59.79 16 2 C -0.01 -0.44 5.46 84.66 0.46 0.02 16 3 Si 0.97 44.55 29.54 68.60 2.03 46.58 16 4 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 5 H -0.29 -12.95 7.11 99.48 0.71 -12.25 16 6 H -0.25 -10.79 7.11 99.48 0.71 -10.09 16 7 C -0.54 -31.15 9.11 25.60 0.23 -30.92 16 8 H 0.08 3.93 7.74 -2.91 -0.02 3.91 16 9 C 0.04 2.43 4.26 29.85 0.13 2.56 16 10 C -0.12 -4.84 5.64 29.85 0.17 -4.67 16 11 C 0.51 19.86 7.83 87.66 0.69 20.54 16 12 O -0.59 -29.40 15.97 -3.03 -0.05 -29.45 16 13 N -0.71 -19.07 4.95 -463.06 -2.29 -21.36 16 14 C 0.13 3.06 3.88 86.38 0.33 3.40 16 15 C -0.04 -0.69 0.35 -52.18 -0.02 -0.71 16 16 C 0.06 0.99 4.08 86.30 0.35 1.35 16 17 N -0.52 -6.79 3.55 -895.23 -3.18 -9.97 16 18 C 0.00 0.06 4.93 86.32 0.43 0.48 16 19 C 0.06 0.73 7.01 72.02 0.50 1.24 16 20 O -0.41 -6.63 10.83 -148.98 -1.61 -8.24 16 21 C 0.06 0.78 7.01 72.01 0.50 1.28 16 22 C 0.02 0.22 5.47 86.31 0.47 0.69 16 23 C -0.09 -1.30 4.57 30.60 0.14 -1.16 16 24 C -0.13 -1.99 5.65 30.59 0.17 -1.81 16 25 C -0.11 -1.59 5.92 30.60 0.18 -1.41 16 26 C -0.12 -1.96 5.65 30.59 0.17 -1.78 16 27 C -0.11 -1.47 3.21 30.59 0.10 -1.37 16 28 H 0.26 15.74 8.31 -92.70 -0.77 14.97 16 29 H -0.02 -1.20 8.10 -2.39 -0.02 -1.22 16 30 H -0.02 -1.18 8.10 -2.39 -0.02 -1.20 16 31 H 0.10 3.66 8.14 -2.39 -0.02 3.64 16 32 H 0.10 3.61 8.14 -2.39 -0.02 3.59 16 33 H 0.41 8.31 6.19 -92.71 -0.57 7.74 16 34 H 0.06 1.66 4.81 -2.39 -0.01 1.65 16 35 H 0.05 1.32 8.13 -2.39 -0.02 1.30 16 36 H 0.07 1.14 7.62 -2.39 -0.02 1.12 16 37 H 0.04 0.73 6.47 -2.39 -0.02 0.71 16 38 H 0.03 0.48 8.11 -2.39 -0.02 0.46 16 39 H 0.11 1.08 4.86 -2.38 -0.01 1.06 16 40 H 0.07 0.68 8.14 -2.38 -0.02 0.66 16 41 H 0.11 0.98 8.14 -2.39 -0.02 0.96 16 42 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 43 H 0.11 1.00 8.14 -2.39 -0.02 0.98 16 44 H 0.09 1.05 8.02 -2.39 -0.02 1.03 16 45 H 0.03 0.48 8.14 -2.39 -0.02 0.46 16 46 H 0.05 0.86 8.14 -2.39 -0.02 0.84 16 47 H 0.09 1.20 7.59 -2.38 -0.02 1.19 16 48 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 49 H 0.04 0.89 6.47 -2.38 -0.02 0.87 16 50 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 51 H 0.06 0.82 8.14 -2.38 -0.02 0.80 16 52 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 53 H 0.04 0.89 6.39 -2.39 -0.02 0.88 16 54 H 0.09 1.06 5.73 -2.39 -0.01 1.04 16 55 H 0.06 0.81 6.78 -2.39 -0.02 0.79 16 Total: -1.00 -76.94 406.60 0.49 -76.45 By element: Atomic # 1 Polarization: 17.77 SS G_CDS: 0.29 Total: 18.05 kcal Atomic # 6 Polarization: -17.29 SS G_CDS: 5.02 Total: -12.28 kcal Atomic # 7 Polarization: -85.93 SS G_CDS: -5.19 Total: -91.12 kcal Atomic # 8 Polarization: -36.03 SS G_CDS: -1.66 Total: -37.69 kcal Atomic # 14 Polarization: 44.55 SS G_CDS: 2.03 Total: 46.58 kcal Total: -76.94 0.49 -76.45 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360331027.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.631 kcal (2) G-P(sol) polarization free energy of solvation -76.937 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.568 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.485 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.452 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.083 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.27 seconds