Wall clock time and date at job start Tue Mar 31 2020 21:35:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 109.47333 * 2 1 4 4 C 1.50698 * 109.47258 * 239.99979 * 2 1 3 5 5 H 1.07993 * 120.00262 * 240.00416 * 4 2 1 6 6 C 1.37880 * 119.99886 * 59.99803 * 4 2 1 7 7 N 1.31517 * 119.99838 * 0.02562 * 6 4 2 8 8 Si 1.86799 * 120.00101 * 180.02562 * 6 4 2 9 9 H 1.48501 * 109.46992 * 0.02562 * 8 6 4 10 10 H 1.48494 * 109.47213 * 120.00425 * 8 6 4 11 11 H 1.48500 * 109.46909 * 240.00210 * 8 6 4 12 12 C 1.52997 * 109.47049 * 120.00008 * 2 1 3 13 13 N 1.46500 * 109.47295 * 300.00151 * 12 2 1 14 14 C 1.34779 * 120.00048 * 180.02562 * 13 12 2 15 15 O 1.21350 * 119.99835 * 359.97438 * 14 13 12 16 16 C 1.49444 * 120.00051 * 179.97438 * 14 13 12 17 17 O 1.21350 * 120.00113 * 359.97438 * 16 14 13 18 18 N 1.34777 * 120.00300 * 179.97438 * 16 14 13 19 19 C 1.46496 * 120.00485 * 179.97438 * 18 16 14 20 20 C 1.52997 * 109.47484 * 180.02562 * 19 18 16 21 21 H 1.09002 * 109.47153 * 55.00066 * 20 19 18 22 22 C 1.53002 * 109.46817 * 295.00296 * 20 19 18 23 23 C 1.53006 * 109.46711 * 180.02562 * 22 20 19 24 24 C 1.52997 * 109.47445 * 59.99695 * 23 22 20 25 25 C 1.53002 * 109.47092 * 300.00075 * 24 23 22 26 26 C 1.53000 * 109.46911 * 179.97438 * 25 24 23 27 27 C 1.52996 * 109.46969 * 299.99940 * 25 24 23 28 28 C 1.53000 * 109.47060 * 175.00385 * 20 19 18 29 29 H 1.08998 * 109.47250 * 299.99873 * 1 2 3 30 30 H 1.09000 * 109.46959 * 59.99840 * 1 2 3 31 31 H 1.08998 * 109.47252 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.47227 * 179.97438 * 3 2 1 33 33 H 1.09004 * 109.47014 * 300.00471 * 3 2 1 34 34 H 1.09006 * 109.46717 * 60.00178 * 3 2 1 35 35 H 0.97000 * 120.00005 * 180.02562 * 7 6 4 36 36 H 1.09000 * 109.47325 * 180.02562 * 12 2 1 37 37 H 1.09008 * 109.47017 * 60.00130 * 12 2 1 38 38 H 0.96999 * 119.99712 * 359.97438 * 13 12 2 39 39 H 0.97005 * 119.99931 * 0.02562 * 18 16 14 40 40 H 1.09000 * 109.46667 * 60.00073 * 19 18 16 41 41 H 1.09008 * 109.47241 * 300.00430 * 19 18 16 42 42 H 1.09002 * 109.47075 * 299.99262 * 22 20 19 43 43 H 1.08996 * 109.47407 * 60.00219 * 22 20 19 44 44 H 1.09001 * 109.46726 * 179.97438 * 23 22 20 45 45 H 1.09002 * 109.46589 * 299.99365 * 23 22 20 46 46 H 1.09002 * 109.47045 * 59.99942 * 24 23 22 47 47 H 1.09000 * 109.47140 * 179.97438 * 24 23 22 48 48 H 1.09004 * 109.46724 * 60.00450 * 26 25 24 49 49 H 1.08992 * 109.47098 * 179.97438 * 26 25 24 50 50 H 1.09001 * 109.47583 * 300.00736 * 26 25 24 51 51 H 1.08996 * 109.47452 * 59.99938 * 27 25 24 52 52 H 1.09001 * 109.46997 * 180.02562 * 27 25 24 53 53 H 1.09000 * 109.47054 * 300.00097 * 27 25 24 54 54 H 1.09001 * 109.47194 * 299.99650 * 28 20 19 55 55 H 1.08992 * 109.47399 * 59.99823 * 28 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6532 -1.5885 -1.1314 6 6 1.6993 -0.2393 -2.4827 7 7 0.9435 0.8302 -2.6034 8 14 2.3213 -1.1203 -4.0080 9 1 3.1455 -2.2876 -3.6038 10 1 1.1661 -1.5865 -4.8161 11 1 3.1466 -0.1873 -4.8165 12 6 2.0400 -0.7212 1.2492 13 7 1.5516 -0.0307 2.4454 14 6 1.8777 -0.4909 3.6695 15 8 2.5753 -1.4775 3.7808 16 6 1.3800 0.2139 4.8898 17 8 0.6827 1.2008 4.7785 18 7 1.7055 -0.2466 6.1139 19 6 1.2181 0.4446 7.3101 20 6 1.7284 -0.2764 8.5593 21 1 2.8147 -0.3551 8.5151 22 6 1.1178 -1.6778 8.6244 23 6 1.6276 -2.3986 9.8741 24 6 1.2234 -1.6076 11.1198 25 6 1.8340 -0.2063 11.0545 26 6 1.4291 0.5849 12.3000 27 6 3.3587 -0.3167 10.9931 28 6 1.3245 0.5143 9.8053 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 3.1301 1.4425 0.0005 33 1 1.6767 1.9563 -0.8900 34 1 1.6767 1.9563 0.8901 35 1 0.7088 1.1614 -3.4843 36 1 3.1300 -0.7209 1.2495 37 1 1.6766 -1.7490 1.2492 38 1 0.9943 0.7582 2.3564 39 1 2.2632 -1.0353 6.2029 40 1 0.1281 0.4454 7.3103 41 1 1.5822 1.4721 7.3098 42 1 0.0315 -1.5991 8.6687 43 1 1.4055 -2.2411 7.7368 44 1 1.1923 -3.3968 9.9207 45 1 2.7139 -2.4773 9.8302 46 1 0.1371 -1.5290 11.1635 47 1 1.5862 -2.1214 12.0100 48 1 1.7921 0.0715 13.1904 49 1 1.8645 1.5830 12.2537 50 1 0.3428 0.6634 12.3434 51 1 3.6468 -0.8802 10.1057 52 1 3.7938 0.6816 10.9471 53 1 3.7219 -0.8303 11.8833 54 1 1.7596 1.5127 9.7589 55 1 0.2384 0.5930 9.8494 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000422458597.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:35:53 Heat of formation + Delta-G solvation = -128.066176 kcal Electronic energy + Delta-G solvation = -29987.483649 eV Core-core repulsion = 26022.112597 eV Total energy + Delta-G solvation = -3965.371052 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -41.76255 -40.66593 -39.62866 -38.19369 -36.61353 -35.05371 -33.79810 -32.74440 -32.29687 -28.35775 -28.15193 -27.59031 -27.39393 -27.20092 -26.73365 -24.25046 -22.97998 -21.55786 -21.42456 -20.70488 -19.59323 -19.28242 -18.02131 -17.66828 -17.12083 -16.79271 -16.51946 -16.27540 -16.10247 -15.67195 -15.53499 -15.27046 -14.90201 -14.81074 -14.75715 -14.59081 -14.28173 -14.04549 -13.74706 -13.51787 -13.21991 -13.14135 -12.92518 -12.81154 -12.72555 -12.71207 -12.67268 -12.55922 -12.30426 -12.28306 -12.19158 -12.11754 -11.79913 -11.76775 -11.51122 -11.30572 -11.10010 -10.96232 -10.83614 -10.74896 -10.60169 -10.41559 -10.30477 -10.11805 -8.01519 -6.17848 0.35343 1.36886 1.43157 1.47698 1.56825 2.15326 2.45533 2.73224 3.22345 3.47233 3.57826 3.72013 3.78010 4.06233 4.17325 4.29925 4.34387 4.41051 4.47076 4.49404 4.54454 4.60859 4.67612 4.68534 4.75220 4.82243 4.88137 4.92293 4.93872 5.03735 5.03763 5.05786 5.11061 5.12140 5.16940 5.16995 5.20721 5.21764 5.25474 5.31752 5.32391 5.44501 5.47859 5.52592 5.54727 5.64497 5.67891 5.69943 5.95537 6.10933 6.18803 6.39246 6.41496 6.74348 6.86748 6.96931 7.50063 8.97939 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.032930 B = 0.001800 C = 0.001762 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 850.087909 B =15551.456744 C =15887.055627 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C 0.048 3.952 3 C -0.123 4.123 4 C -0.523 4.523 5 H 0.052 0.948 6 C 0.025 3.975 7 N -0.901 5.901 8 Si 0.949 3.051 9 H -0.272 1.272 10 H -0.283 1.283 11 H -0.283 1.283 12 C 0.143 3.857 13 N -0.682 5.682 14 C 0.497 3.503 15 O -0.551 6.551 16 C 0.512 3.488 17 O -0.543 6.543 18 N -0.685 5.685 19 C 0.120 3.880 20 C -0.091 4.091 21 H 0.087 0.913 22 C -0.117 4.117 23 C -0.120 4.120 24 C -0.107 4.107 25 C -0.062 4.062 26 C -0.141 4.141 27 C -0.146 4.146 28 C -0.098 4.098 29 H 0.029 0.971 30 H 0.063 0.937 31 H 0.023 0.977 32 H 0.023 0.977 33 H 0.063 0.937 34 H 0.029 0.971 35 H 0.260 0.740 36 H 0.055 0.945 37 H 0.055 0.945 38 H 0.413 0.587 39 H 0.418 0.582 40 H 0.070 0.930 41 H 0.072 0.928 42 H 0.062 0.938 43 H 0.058 0.942 44 H 0.063 0.937 45 H 0.067 0.933 46 H 0.060 0.940 47 H 0.065 0.935 48 H 0.057 0.943 49 H 0.055 0.945 50 H 0.055 0.945 51 H 0.060 0.940 52 H 0.053 0.947 53 H 0.055 0.945 54 H 0.068 0.932 55 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.835 -1.691 29.817 29.877 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.048 3.952 3 C -0.181 4.181 4 C -0.562 4.562 5 H 0.070 0.930 6 C -0.175 4.175 7 N -0.540 5.540 8 Si 0.776 3.224 9 H -0.196 1.196 10 H -0.209 1.209 11 H -0.209 1.209 12 C 0.020 3.980 13 N -0.334 5.334 14 C 0.277 3.723 15 O -0.430 6.430 16 C 0.292 3.708 17 O -0.421 6.421 18 N -0.338 5.338 19 C -0.002 4.002 20 C -0.110 4.110 21 H 0.105 0.895 22 C -0.155 4.155 23 C -0.157 4.157 24 C -0.144 4.144 25 C -0.062 4.062 26 C -0.198 4.198 27 C -0.203 4.203 28 C -0.136 4.136 29 H 0.048 0.952 30 H 0.082 0.918 31 H 0.042 0.958 32 H 0.043 0.957 33 H 0.082 0.918 34 H 0.048 0.952 35 H 0.069 0.931 36 H 0.073 0.927 37 H 0.073 0.927 38 H 0.251 0.749 39 H 0.256 0.744 40 H 0.088 0.912 41 H 0.091 0.909 42 H 0.081 0.919 43 H 0.077 0.923 44 H 0.082 0.918 45 H 0.086 0.914 46 H 0.079 0.921 47 H 0.083 0.917 48 H 0.076 0.924 49 H 0.074 0.926 50 H 0.074 0.926 51 H 0.079 0.921 52 H 0.072 0.928 53 H 0.074 0.926 54 H 0.087 0.913 55 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 0.747 -1.569 29.678 29.729 hybrid contribution 0.216 -0.366 -1.288 1.356 sum 0.963 -1.935 28.390 28.473 Atomic orbital electron populations 1.21699 0.97320 0.98899 1.00189 1.18405 0.93192 0.93059 0.90573 1.21701 0.98219 0.97994 1.00191 1.21258 1.31655 1.12199 0.91096 0.93023 1.25511 0.95170 0.95607 1.01191 1.69934 1.37070 1.23405 1.23563 0.85647 0.78032 0.78716 0.80037 1.19622 1.20933 1.20919 1.21550 0.97926 0.95490 0.82996 1.46078 1.50770 1.31451 1.05058 1.20370 0.81674 0.84899 0.85317 1.90710 1.38534 1.26685 1.87108 1.20000 0.81197 0.84404 0.85208 1.90753 1.37916 1.26361 1.87074 1.45774 1.51785 1.31958 1.04328 1.21703 0.99674 0.96396 0.82435 1.21407 1.01459 0.95369 0.92739 0.89507 1.21623 1.00617 0.94883 0.98336 1.21559 1.01423 0.98609 0.94106 1.21589 1.00379 0.94698 0.97733 1.20492 0.95745 0.95212 0.94763 1.21850 1.01321 0.99846 0.96777 1.21986 0.94523 1.01788 1.02011 1.21535 1.01309 0.98432 0.92294 0.95194 0.91803 0.95752 0.95746 0.91792 0.95200 0.93068 0.92709 0.92711 0.74932 0.74413 0.91163 0.90947 0.91910 0.92343 0.91838 0.91390 0.92101 0.91674 0.92388 0.92565 0.92614 0.92143 0.92762 0.92558 0.91287 0.91470 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.63 8.08 71.98 0.58 -5.05 16 2 C 0.05 2.25 0.50 -52.93 -0.03 2.22 16 3 C -0.12 -5.63 8.08 71.98 0.58 -5.05 16 4 C -0.52 -27.26 8.01 25.60 0.21 -27.06 16 5 H 0.05 2.70 7.74 -2.91 -0.02 2.68 16 6 C 0.02 1.30 5.15 84.66 0.44 1.74 16 7 N -0.90 -48.38 9.35 21.45 0.20 -48.18 16 8 Si 0.95 42.33 29.54 68.60 2.03 44.35 16 9 H -0.27 -11.95 7.11 99.48 0.71 -11.25 16 10 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 11 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 12 C 0.14 5.97 4.50 86.38 0.39 6.36 16 13 N -0.68 -24.96 4.95 -464.41 -2.30 -27.26 16 14 C 0.50 17.03 7.89 87.27 0.69 17.72 16 15 O -0.55 -20.56 16.48 -3.25 -0.05 -20.61 16 16 C 0.51 15.11 7.89 87.27 0.69 15.80 16 17 O -0.54 -18.31 16.48 -3.25 -0.05 -18.37 16 18 N -0.69 -14.89 5.28 -464.42 -2.45 -17.34 16 19 C 0.12 2.05 5.06 86.38 0.44 2.48 16 20 C -0.09 -1.10 1.95 -10.79 -0.02 -1.12 16 21 H 0.09 1.02 6.43 -2.39 -0.02 1.00 16 22 C -0.12 -1.44 5.08 30.60 0.16 -1.29 16 23 C -0.12 -1.26 5.65 30.60 0.17 -1.09 16 24 C -0.11 -1.02 4.73 30.59 0.14 -0.87 16 25 C -0.06 -0.58 0.77 -52.20 -0.04 -0.62 16 26 C -0.14 -1.22 8.47 71.98 0.61 -0.61 16 27 C -0.15 -1.38 7.78 71.98 0.56 -0.82 16 28 C -0.10 -1.02 4.01 30.58 0.12 -0.90 16 29 H 0.03 1.20 6.86 -2.39 -0.02 1.18 16 30 H 0.06 3.24 6.07 -2.39 -0.01 3.22 16 31 H 0.02 1.08 8.14 -2.39 -0.02 1.06 16 32 H 0.02 1.08 8.14 -2.39 -0.02 1.06 16 33 H 0.06 3.24 6.07 -2.39 -0.01 3.23 16 34 H 0.03 1.19 6.86 -2.38 -0.02 1.18 16 35 H 0.26 13.42 8.31 -92.71 -0.77 12.65 16 36 H 0.05 2.35 8.14 -2.39 -0.02 2.33 16 37 H 0.05 2.35 8.14 -2.38 -0.02 2.33 16 38 H 0.41 14.81 5.63 -92.71 -0.52 14.29 16 39 H 0.42 8.18 7.13 -92.70 -0.66 7.52 16 40 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 41 H 0.07 1.28 8.14 -2.38 -0.02 1.26 16 42 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 43 H 0.06 0.80 7.18 -2.39 -0.02 0.79 16 44 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 45 H 0.07 0.71 6.43 -2.39 -0.02 0.69 16 46 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 47 H 0.06 0.58 8.14 -2.39 -0.02 0.56 16 48 H 0.06 0.47 8.14 -2.39 -0.02 0.45 16 49 H 0.06 0.48 8.14 -2.39 -0.02 0.46 16 50 H 0.05 0.48 8.14 -2.39 -0.02 0.46 16 51 H 0.06 0.60 4.81 -2.39 -0.01 0.59 16 52 H 0.05 0.52 8.14 -2.39 -0.02 0.50 16 53 H 0.06 0.50 8.14 -2.39 -0.02 0.48 16 54 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 55 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 Total: -1.00 -58.52 414.94 2.75 -55.77 By element: Atomic # 1 Polarization: 30.10 SS G_CDS: -0.31 Total: 29.79 kcal Atomic # 6 Polarization: -3.83 SS G_CDS: 5.68 Total: 1.85 kcal Atomic # 7 Polarization: -88.24 SS G_CDS: -4.55 Total: -92.79 kcal Atomic # 8 Polarization: -38.87 SS G_CDS: -0.11 Total: -38.98 kcal Atomic # 14 Polarization: 42.33 SS G_CDS: 2.03 Total: 44.35 kcal Total: -58.52 2.75 -55.77 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000422458597.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.295 kcal (2) G-P(sol) polarization free energy of solvation -58.519 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.814 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.748 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.771 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.066 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds