Wall clock time and date at job start Tue Mar 31 2020 21:35:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52994 * 109.47220 * 2 1 4 4 C 1.50692 * 109.46978 * 120.00617 * 2 1 3 5 5 H 1.08003 * 120.00272 * 117.90710 * 4 2 1 6 6 C 1.37881 * 119.99987 * 297.90778 * 4 2 1 7 7 N 1.31517 * 119.99673 * 7.59731 * 6 4 2 8 8 Si 1.86801 * 120.00233 * 187.60476 * 6 4 2 9 9 H 1.48505 * 109.46588 * 265.12016 * 8 6 4 10 10 H 1.48498 * 109.47295 * 25.11440 * 8 6 4 11 11 H 1.48495 * 109.47407 * 145.11754 * 8 6 4 12 12 C 1.53002 * 109.46656 * 240.00144 * 2 1 3 13 13 N 1.46497 * 109.47349 * 60.00640 * 12 2 1 14 14 C 1.34783 * 120.00143 * 179.97438 * 13 12 2 15 15 O 1.21345 * 119.99851 * 0.02562 * 14 13 12 16 16 C 1.49448 * 119.99718 * 179.97438 * 14 13 12 17 17 O 1.21344 * 120.00370 * 0.02562 * 16 14 13 18 18 N 1.34782 * 119.99646 * 180.02562 * 16 14 13 19 19 C 1.46498 * 119.99686 * 180.02562 * 18 16 14 20 20 C 1.53003 * 109.47030 * 179.97438 * 19 18 16 21 21 H 1.09006 * 109.47162 * 305.00295 * 20 19 18 22 22 C 1.53006 * 109.46849 * 64.99417 * 20 19 18 23 23 C 1.53003 * 109.46849 * 179.97438 * 22 20 19 24 24 C 1.52998 * 109.47261 * 300.00365 * 23 22 20 25 25 C 1.53001 * 109.47110 * 60.00374 * 24 23 22 26 26 C 1.52998 * 109.47110 * 180.02562 * 25 24 23 27 27 C 1.52998 * 109.47353 * 59.99620 * 25 24 23 28 28 C 1.52997 * 109.47629 * 184.99826 * 20 19 18 29 29 H 1.08995 * 109.46942 * 305.79101 * 1 2 3 30 30 H 1.09008 * 109.46472 * 65.78922 * 1 2 3 31 31 H 1.08996 * 109.46993 * 185.78845 * 1 2 3 32 32 H 1.09002 * 109.47143 * 179.97438 * 3 2 1 33 33 H 1.08995 * 109.47815 * 300.00147 * 3 2 1 34 34 H 1.09000 * 109.46674 * 60.00217 * 3 2 1 35 35 H 0.96997 * 119.99660 * 180.02562 * 7 6 4 36 36 H 1.09004 * 109.46953 * 180.02562 * 12 2 1 37 37 H 1.08997 * 109.47728 * 299.99735 * 12 2 1 38 38 H 0.96997 * 120.00218 * 359.97438 * 13 12 2 39 39 H 0.96997 * 119.99711 * 359.97438 * 18 16 14 40 40 H 1.08999 * 109.46964 * 299.99203 * 19 18 16 41 41 H 1.09002 * 109.47545 * 59.99874 * 19 18 16 42 42 H 1.08992 * 109.47576 * 300.00156 * 22 20 19 43 43 H 1.09000 * 109.46868 * 60.00734 * 22 20 19 44 44 H 1.08994 * 109.47162 * 179.97438 * 23 22 20 45 45 H 1.09003 * 109.47018 * 59.99947 * 23 22 20 46 46 H 1.09000 * 109.47481 * 299.99893 * 24 23 22 47 47 H 1.09000 * 109.47263 * 179.97438 * 24 23 22 48 48 H 1.09003 * 109.47329 * 179.97438 * 26 25 24 49 49 H 1.09000 * 109.47263 * 299.99417 * 26 25 24 50 50 H 1.09000 * 109.47481 * 59.99519 * 26 25 24 51 51 H 1.08992 * 109.47336 * 300.00367 * 27 25 24 52 52 H 1.09000 * 109.47101 * 60.00533 * 27 25 24 53 53 H 1.09003 * 109.46903 * 180.02562 * 27 25 24 54 54 H 1.09002 * 109.46779 * 300.00576 * 28 20 19 55 55 H 1.09003 * 109.46656 * 59.99806 * 28 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0323 -0.7105 1.2303 5 1 2.6251 -1.6079 1.1316 6 6 1.7352 -0.2149 2.4822 7 7 0.8930 0.7871 2.6098 8 14 2.5289 -0.9666 3.9970 9 1 1.6222 -1.9917 4.5737 10 1 3.8164 -1.6019 3.6175 11 1 2.7789 0.0959 5.0037 12 6 2.0400 -0.7213 -1.2493 13 7 1.5517 -0.0306 -2.4454 14 6 1.8777 -0.4907 -3.6696 15 8 2.5752 -1.4774 -3.7810 16 6 1.3791 0.2136 -4.8898 17 8 0.6812 1.2000 -4.7784 18 7 1.7047 -0.2468 -6.1140 19 6 1.2164 0.4439 -7.3100 20 6 1.7268 -0.2769 -8.5594 21 1 2.8132 -0.3550 -8.5155 22 6 1.1171 -1.6788 -8.6241 23 6 1.6270 -2.3994 -9.8738 24 6 1.2218 -1.6089 -11.1194 25 6 1.8315 -0.2072 -11.0547 26 6 1.4257 0.5836 -12.3000 27 6 3.3564 -0.3166 -10.9937 28 6 1.3221 0.5133 -9.8054 29 1 -0.3633 0.6010 0.8336 30 1 -0.3632 0.4215 -0.9374 31 1 -0.3633 -1.0224 0.1036 32 1 3.1301 1.4424 0.0005 33 1 1.6768 1.9564 -0.8899 34 1 1.6767 1.9562 0.8900 35 1 0.6843 1.1360 3.4905 36 1 3.1300 -0.7217 -1.2491 37 1 1.6767 -1.7489 -1.2494 38 1 0.9939 0.7579 -2.3565 39 1 2.2628 -1.0351 -6.2029 40 1 0.1264 0.4439 -7.3100 41 1 1.5798 1.4716 -7.3100 42 1 1.4054 -2.2418 -7.7365 43 1 0.0308 -1.6008 -8.6680 44 1 1.1931 -3.3982 -9.9197 45 1 2.7134 -2.4773 -9.8304 46 1 0.1354 -1.5310 -11.1629 47 1 1.5854 -2.1221 -12.0097 48 1 1.8598 1.5824 -12.2537 49 1 1.7887 0.0704 -13.1905 50 1 0.3394 0.6615 -12.3430 51 1 3.6451 -0.8797 -10.1063 52 1 3.7197 -0.8299 -11.8840 53 1 3.7907 0.6821 -10.9471 54 1 0.2358 0.5913 -9.8492 55 1 1.7565 1.5119 -9.7591 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000422458598.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:35:58 Heat of formation + Delta-G solvation = -127.737425 kcal Electronic energy + Delta-G solvation = -29987.216654 eV Core-core repulsion = 26021.859858 eV Total energy + Delta-G solvation = -3965.356796 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -41.76327 -40.66619 -39.62956 -38.19250 -36.61249 -35.04903 -33.79777 -32.75072 -32.29632 -28.35933 -28.15207 -27.59534 -27.38858 -27.19973 -26.73315 -24.25081 -22.98036 -21.55770 -21.42568 -20.70303 -19.59339 -19.28156 -18.02030 -17.66703 -17.12018 -16.78556 -16.51820 -16.27431 -16.10322 -15.66877 -15.53580 -15.27427 -14.89988 -14.81106 -14.74784 -14.59236 -14.28103 -14.04490 -13.74645 -13.51861 -13.27932 -13.10089 -12.92557 -12.80964 -12.72532 -12.70984 -12.67249 -12.57987 -12.30366 -12.27640 -12.19136 -12.12006 -11.79894 -11.76713 -11.50719 -11.30539 -11.10003 -10.96201 -10.83605 -10.77077 -10.61040 -10.38983 -10.30298 -10.11413 -8.02398 -6.16842 0.35423 1.36841 1.43767 1.47619 1.56268 2.15394 2.45668 2.73207 3.21785 3.47250 3.57862 3.72010 3.78058 4.06257 4.17361 4.29964 4.34326 4.41094 4.47049 4.49414 4.54504 4.60887 4.67835 4.68587 4.75258 4.82299 4.88218 4.92599 4.93903 5.03374 5.03714 5.05345 5.11103 5.12174 5.16179 5.17038 5.20756 5.21649 5.25524 5.31768 5.32425 5.44488 5.47969 5.52596 5.54780 5.64004 5.68671 5.69985 5.95579 6.09259 6.18430 6.38996 6.41137 6.74420 6.86983 6.97003 7.50301 8.97585 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.032899 B = 0.001800 C = 0.001763 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 850.895748 B =15556.110656 C =15875.317869 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C 0.049 3.951 3 C -0.122 4.122 4 C -0.527 4.527 5 H 0.051 0.949 6 C 0.027 3.973 7 N -0.900 5.900 8 Si 0.947 3.053 9 H -0.281 1.281 10 H -0.272 1.272 11 H -0.284 1.284 12 C 0.143 3.857 13 N -0.682 5.682 14 C 0.497 3.503 15 O -0.551 6.551 16 C 0.512 3.488 17 O -0.543 6.543 18 N -0.685 5.685 19 C 0.120 3.880 20 C -0.091 4.091 21 H 0.087 0.913 22 C -0.117 4.117 23 C -0.120 4.120 24 C -0.106 4.106 25 C -0.062 4.062 26 C -0.141 4.141 27 C -0.146 4.146 28 C -0.098 4.098 29 H 0.064 0.936 30 H 0.028 0.972 31 H 0.021 0.979 32 H 0.026 0.974 33 H 0.031 0.969 34 H 0.058 0.942 35 H 0.260 0.740 36 H 0.055 0.945 37 H 0.054 0.946 38 H 0.413 0.587 39 H 0.418 0.582 40 H 0.070 0.930 41 H 0.072 0.928 42 H 0.058 0.942 43 H 0.062 0.938 44 H 0.063 0.937 45 H 0.067 0.933 46 H 0.060 0.940 47 H 0.065 0.935 48 H 0.055 0.945 49 H 0.057 0.943 50 H 0.055 0.945 51 H 0.060 0.940 52 H 0.055 0.945 53 H 0.053 0.947 54 H 0.067 0.933 55 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.053 -1.475 -29.874 29.929 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.048 3.952 3 C -0.180 4.180 4 C -0.565 4.565 5 H 0.070 0.930 6 C -0.173 4.173 7 N -0.538 5.538 8 Si 0.774 3.226 9 H -0.207 1.207 10 H -0.197 1.197 11 H -0.210 1.210 12 C 0.021 3.979 13 N -0.334 5.334 14 C 0.277 3.723 15 O -0.430 6.430 16 C 0.292 3.708 17 O -0.421 6.421 18 N -0.339 5.339 19 C -0.002 4.002 20 C -0.110 4.110 21 H 0.105 0.895 22 C -0.155 4.155 23 C -0.157 4.157 24 C -0.144 4.144 25 C -0.062 4.062 26 C -0.198 4.198 27 C -0.203 4.203 28 C -0.136 4.136 29 H 0.083 0.917 30 H 0.047 0.953 31 H 0.040 0.960 32 H 0.045 0.955 33 H 0.050 0.950 34 H 0.077 0.923 35 H 0.069 0.931 36 H 0.074 0.926 37 H 0.072 0.928 38 H 0.251 0.749 39 H 0.256 0.744 40 H 0.088 0.912 41 H 0.091 0.909 42 H 0.077 0.923 43 H 0.081 0.919 44 H 0.082 0.918 45 H 0.086 0.914 46 H 0.079 0.921 47 H 0.083 0.917 48 H 0.074 0.926 49 H 0.076 0.924 50 H 0.074 0.926 51 H 0.079 0.921 52 H 0.074 0.926 53 H 0.072 0.928 54 H 0.085 0.915 55 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 0.963 -1.348 -29.733 29.779 hybrid contribution 0.273 -0.339 1.298 1.369 sum 1.236 -1.686 -28.435 28.512 Atomic orbital electron populations 1.21725 0.97283 0.99411 0.99448 1.18402 0.93201 0.93015 0.90596 1.21668 0.98348 0.97923 1.00056 1.21215 1.33341 1.10835 0.91112 0.93028 1.25502 0.95111 0.95626 1.01093 1.69965 1.33546 1.26671 1.23611 0.85720 0.79030 0.78043 0.79850 1.20679 1.19700 1.21017 1.21533 0.97962 0.95471 0.82984 1.46084 1.50757 1.31479 1.05058 1.20370 0.81675 0.84895 0.85315 1.90709 1.38543 1.26667 1.87104 1.20000 0.81204 0.84396 0.85207 1.90751 1.37891 1.26379 1.87068 1.45774 1.51751 1.31996 1.04330 1.21703 0.99663 0.96404 0.82435 1.21409 1.01460 0.95364 0.92742 0.89506 1.21623 1.00620 0.94884 0.98334 1.21557 1.01424 0.98608 0.94108 1.21589 1.00377 0.94698 0.97730 1.20491 0.95747 0.95213 0.94763 1.21850 1.01321 0.99844 0.96778 1.21986 0.94521 1.01790 1.02009 1.21535 1.01306 0.98437 0.92294 0.91730 0.95318 0.95959 0.95526 0.94983 0.92273 0.93075 0.92632 0.92770 0.74917 0.74415 0.91166 0.90937 0.92345 0.91914 0.91841 0.91395 0.92097 0.91676 0.92564 0.92383 0.92622 0.92148 0.92554 0.92760 0.91474 0.91284 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.55 8.08 71.98 0.58 -4.97 16 2 C 0.05 2.26 0.50 -52.93 -0.03 2.23 16 3 C -0.12 -5.54 8.06 71.98 0.58 -4.96 16 4 C -0.53 -27.44 8.00 25.60 0.20 -27.23 16 5 H 0.05 2.70 7.76 -2.91 -0.02 2.67 16 6 C 0.03 1.40 5.12 84.66 0.43 1.83 16 7 N -0.90 -48.36 9.48 21.45 0.20 -48.15 16 8 Si 0.95 42.30 29.54 68.60 2.03 44.33 16 9 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 10 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 11 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 12 C 0.14 5.97 4.50 86.38 0.39 6.36 16 13 N -0.68 -24.91 4.90 -464.41 -2.28 -27.19 16 14 C 0.50 17.00 7.89 87.27 0.69 17.69 16 15 O -0.55 -20.53 16.48 -3.23 -0.05 -20.58 16 16 C 0.51 15.08 7.89 87.27 0.69 15.77 16 17 O -0.54 -18.27 16.48 -3.23 -0.05 -18.32 16 18 N -0.69 -14.87 5.28 -464.41 -2.45 -17.32 16 19 C 0.12 2.04 5.06 86.38 0.44 2.48 16 20 C -0.09 -1.10 1.95 -10.79 -0.02 -1.12 16 21 H 0.09 1.02 6.43 -2.38 -0.02 1.00 16 22 C -0.12 -1.44 5.08 30.60 0.16 -1.29 16 23 C -0.12 -1.26 5.65 30.59 0.17 -1.09 16 24 C -0.11 -1.02 4.73 30.59 0.14 -0.87 16 25 C -0.06 -0.58 0.77 -52.20 -0.04 -0.62 16 26 C -0.14 -1.21 8.47 71.98 0.61 -0.60 16 27 C -0.15 -1.38 7.78 71.98 0.56 -0.82 16 28 C -0.10 -1.02 4.01 30.57 0.12 -0.90 16 29 H 0.06 3.27 6.16 -2.39 -0.01 3.26 16 30 H 0.03 1.15 6.72 -2.38 -0.02 1.13 16 31 H 0.02 1.00 8.14 -2.39 -0.02 0.98 16 32 H 0.03 1.17 8.14 -2.39 -0.02 1.15 16 33 H 0.03 1.27 6.86 -2.39 -0.02 1.26 16 34 H 0.06 2.97 6.21 -2.39 -0.01 2.95 16 35 H 0.26 13.46 8.31 -92.71 -0.77 12.69 16 36 H 0.06 2.37 8.14 -2.38 -0.02 2.35 16 37 H 0.05 2.32 8.14 -2.39 -0.02 2.30 16 38 H 0.41 14.77 5.63 -92.71 -0.52 14.25 16 39 H 0.42 8.17 7.13 -92.71 -0.66 7.51 16 40 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 41 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 42 H 0.06 0.80 7.18 -2.39 -0.02 0.79 16 43 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 44 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 45 H 0.07 0.71 6.43 -2.39 -0.02 0.69 16 46 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 47 H 0.06 0.58 8.14 -2.39 -0.02 0.56 16 48 H 0.06 0.48 8.14 -2.39 -0.02 0.46 16 49 H 0.06 0.47 8.14 -2.39 -0.02 0.45 16 50 H 0.05 0.48 8.14 -2.39 -0.02 0.46 16 51 H 0.06 0.60 4.81 -2.39 -0.01 0.59 16 52 H 0.06 0.50 8.14 -2.39 -0.02 0.48 16 53 H 0.05 0.52 8.14 -2.39 -0.02 0.50 16 54 H 0.07 0.71 8.14 -2.39 -0.02 0.70 16 55 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 Total: -1.00 -58.55 415.05 2.77 -55.78 By element: Atomic # 1 Polarization: 29.86 SS G_CDS: -0.31 Total: 29.55 kcal Atomic # 6 Polarization: -3.78 SS G_CDS: 5.68 Total: 1.90 kcal Atomic # 7 Polarization: -88.14 SS G_CDS: -4.52 Total: -92.66 kcal Atomic # 8 Polarization: -38.80 SS G_CDS: -0.11 Total: -38.91 kcal Atomic # 14 Polarization: 42.30 SS G_CDS: 2.03 Total: 44.33 kcal Total: -58.55 2.77 -55.78 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000422458598.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.955 kcal (2) G-P(sol) polarization free energy of solvation -58.554 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.509 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.771 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.783 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.737 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds