Wall clock time and date at job start Tue Mar 31 2020 22:24:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46901 * 111.00439 * 2 1 4 4 C 1.46905 * 110.99893 * 123.95808 * 2 1 3 5 5 C 1.52999 * 109.46854 * 169.99873 * 4 2 1 6 6 C 1.52998 * 109.46851 * 179.97438 * 5 4 2 7 7 N 1.46501 * 109.47133 * 179.97438 * 6 5 4 8 8 C 1.46500 * 119.99944 * 270.00279 * 7 6 5 9 9 C 1.50701 * 109.47248 * 269.99781 * 8 7 6 10 10 H 1.08002 * 119.99745 * 359.97438 * 9 8 7 11 11 C 1.37876 * 120.00411 * 180.02562 * 9 8 7 12 12 N 1.31507 * 120.00191 * 179.97438 * 11 9 8 13 13 Si 1.86803 * 119.99830 * 0.02562 * 11 9 8 14 14 H 1.48507 * 109.47286 * 89.99568 * 13 11 9 15 15 H 1.48494 * 109.47385 * 209.99946 * 13 11 9 16 16 H 1.48498 * 109.46968 * 330.00096 * 13 11 9 17 17 C 1.34779 * 119.99845 * 90.00134 * 7 6 5 18 18 O 1.21609 * 119.99867 * 0.02562 * 17 7 6 19 19 C 1.47099 * 119.99719 * 180.02562 * 17 7 6 20 20 C 1.33000 * 119.99916 * 185.07306 * 19 17 7 21 21 C 1.50698 * 119.99783 * 45.70312 * 20 19 17 22 22 C 1.53006 * 109.53951 * 134.41907 * 21 20 19 23 23 C 1.53176 * 109.54667 * 14.15082 * 21 20 19 24 24 C 1.53088 * 109.16411 * 183.14936 * 23 21 20 25 25 O 1.42903 * 109.41428 * 57.60786 * 24 23 21 26 26 C 1.42901 * 114.09870 * 298.84343 * 25 24 23 27 27 C 1.53085 * 109.41735 * 61.15587 * 26 25 24 28 28 H 1.09003 * 109.46549 * 296.04792 * 1 2 3 29 29 H 1.08997 * 109.47035 * 56.03986 * 1 2 3 30 30 H 1.08994 * 109.47230 * 176.04550 * 1 2 3 31 31 H 1.09001 * 109.47230 * 183.95294 * 3 2 1 32 32 H 1.09001 * 109.46858 * 303.95912 * 3 2 1 33 33 H 1.09000 * 109.46536 * 63.95296 * 3 2 1 34 34 H 1.08995 * 109.46876 * 49.99793 * 4 2 1 35 35 H 1.09003 * 109.46747 * 289.99415 * 4 2 1 36 36 H 1.08998 * 109.47407 * 59.99501 * 5 4 2 37 37 H 1.09003 * 109.47070 * 299.99344 * 5 4 2 38 38 H 1.09007 * 109.46969 * 60.00207 * 6 5 4 39 39 H 1.08991 * 109.47596 * 299.99856 * 6 5 4 40 40 H 1.08997 * 109.47792 * 30.00100 * 8 7 6 41 41 H 1.09007 * 109.46962 * 150.00410 * 8 7 6 42 42 H 0.97011 * 120.00077 * 179.97438 * 12 11 9 43 43 H 1.08000 * 120.00747 * 5.06637 * 19 17 7 44 44 H 1.07999 * 119.99458 * 225.43601 * 20 19 17 45 45 H 1.08996 * 109.47178 * 66.96986 * 22 21 20 46 46 H 1.09003 * 109.46778 * 186.97500 * 22 21 20 47 47 H 1.08999 * 109.46813 * 306.96566 * 22 21 20 48 48 H 1.08998 * 109.51901 * 303.05374 * 23 21 20 49 49 H 1.08997 * 109.51833 * 63.24274 * 23 21 20 50 50 H 1.08993 * 109.48023 * 297.62753 * 24 23 21 51 51 H 1.08994 * 109.49177 * 177.59728 * 24 23 21 52 52 H 1.09001 * 109.47763 * 301.17204 * 26 25 24 53 53 H 1.09004 * 109.48932 * 181.14913 * 26 25 24 54 54 H 1.09001 * 109.52617 * 182.48347 * 27 26 25 55 55 H 1.09009 * 109.57496 * 62.32995 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9956 1.3714 0.0000 4 6 1.9954 -0.7661 1.1376 5 6 3.5044 -0.9555 0.9703 6 6 4.0528 -1.7528 2.1553 7 7 5.4976 -1.9346 1.9949 8 6 6.0138 -3.1063 1.2829 9 6 6.2355 -4.2311 2.2610 10 1 6.0145 -4.0874 3.3083 11 6 6.7216 -5.4433 1.8191 12 7 6.9156 -6.4247 2.6727 13 14 7.1059 -5.6913 0.0079 14 1 8.5171 -5.3109 -0.2553 15 1 6.9026 -7.1179 -0.3506 16 1 6.2035 -4.8419 -0.8103 17 6 6.3519 -1.0240 2.5023 18 8 5.9234 -0.0516 3.0937 19 6 7.8025 -1.2064 2.3407 20 6 8.6481 -0.3635 2.9267 21 6 8.4399 0.0340 4.3654 22 6 9.7719 -0.0403 5.1147 23 6 7.4292 -0.9142 5.0179 24 6 7.1649 -0.4557 6.4544 25 8 6.6904 0.8922 6.4431 26 6 7.6134 1.8310 5.8875 27 6 7.8958 1.4645 4.4283 28 1 -0.3632 0.4513 0.9233 29 1 -0.3633 0.5741 -0.8524 30 1 -0.3633 -1.0252 -0.0709 31 1 3.0829 1.3431 -0.0708 32 1 1.5899 1.9163 -0.8524 33 1 1.7045 1.8722 0.9233 34 1 1.5089 -1.7407 1.1755 35 1 1.7976 -0.2248 2.0628 36 1 3.9909 0.0192 0.9322 37 1 3.7023 -1.4967 0.0450 38 1 3.5663 -2.7275 2.1937 39 1 3.8550 -1.2113 3.0803 40 1 5.2933 -3.4189 0.5271 41 1 6.9581 -2.8520 0.8015 42 1 7.2572 -7.2777 2.3617 43 1 8.1811 -2.0247 1.7462 44 1 9.4863 0.0328 2.3728 45 1 10.4474 0.7245 4.7316 46 1 9.6002 0.1261 6.1782 47 1 10.2167 -1.0246 4.9682 48 1 6.4972 -0.8977 4.4530 49 1 7.8329 -1.9266 5.0270 50 1 8.0891 -0.5109 7.0294 51 1 6.4142 -1.1015 6.9099 52 1 8.5436 1.8057 6.4552 53 1 7.1860 2.8327 5.9346 54 1 8.6331 2.1532 4.0158 55 1 6.9737 1.5292 3.8505 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000493081014.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:24:14 Heat of formation + Delta-G solvation = -47.278575 kcal Electronic energy + Delta-G solvation = -31829.773803 eV Core-core repulsion = 27867.905964 eV Total energy + Delta-G solvation = -3961.867838 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 2.32 seconds Orbital eigenvalues (eV) -41.68546 -40.14861 -38.66561 -37.16852 -36.36298 -34.72055 -33.39090 -32.23817 -31.88264 -29.80567 -28.78851 -28.50887 -27.49042 -25.44301 -24.55208 -24.40245 -24.03350 -22.30159 -21.73903 -19.98518 -19.09095 -18.78019 -18.20225 -17.40127 -17.07369 -16.73843 -16.51023 -16.43724 -16.12638 -15.81479 -15.69858 -15.62734 -15.47483 -15.08536 -14.89494 -14.50301 -14.47898 -14.01666 -13.85808 -13.55549 -13.41930 -13.29854 -13.14352 -12.97297 -12.93083 -12.82471 -12.63579 -12.53048 -12.42521 -12.33015 -12.20965 -12.04758 -12.00100 -11.70964 -11.62176 -11.51208 -11.48380 -11.00578 -10.79489 -10.62698 -10.30611 -9.44526 -9.34896 -9.14712 -8.28503 -6.34916 0.15217 1.38993 1.41580 1.50870 2.34446 2.35642 2.37047 3.02491 3.04407 3.05819 3.72680 3.77357 3.85817 4.00857 4.04650 4.12673 4.20805 4.21941 4.29882 4.30334 4.40114 4.43967 4.48276 4.49579 4.61336 4.62782 4.65011 4.67674 4.70843 4.73063 4.76034 4.79268 4.83026 4.86531 4.90889 4.94730 4.98113 4.99972 5.09234 5.14256 5.17296 5.24804 5.27447 5.41783 5.45241 5.47840 5.56627 5.62545 5.89010 6.02630 6.09667 6.23089 6.34485 6.66202 6.74764 7.28198 7.46753 8.87897 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.006470 B = 0.005126 C = 0.003201 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4326.327817 B = 5461.177034 C = 8745.037568 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 N -0.561 5.561 3 C 0.024 3.976 4 C 0.064 3.936 5 C -0.111 4.111 6 C 0.123 3.877 7 N -0.593 5.593 8 C 0.219 3.781 9 C -0.533 4.533 10 H 0.028 0.972 11 C 0.020 3.980 12 N -0.943 5.943 13 Si 0.938 3.062 14 H -0.261 1.261 15 H -0.286 1.286 16 H -0.241 1.241 17 C 0.546 3.454 18 O -0.564 6.564 19 C -0.252 4.252 20 C -0.037 4.037 21 C -0.031 4.031 22 C -0.135 4.135 23 C -0.182 4.182 24 C 0.069 3.931 25 O -0.404 6.404 26 C 0.059 3.941 27 C -0.142 4.142 28 H 0.027 0.973 29 H 0.080 0.920 30 H 0.072 0.928 31 H 0.060 0.940 32 H 0.082 0.918 33 H 0.024 0.976 34 H 0.081 0.919 35 H 0.032 0.968 36 H 0.055 0.945 37 H 0.065 0.935 38 H 0.072 0.928 39 H 0.063 0.937 40 H 0.041 0.959 41 H 0.046 0.954 42 H 0.267 0.733 43 H 0.138 0.862 44 H 0.157 0.843 45 H 0.083 0.917 46 H 0.066 0.934 47 H 0.053 0.947 48 H 0.094 0.906 49 H 0.042 0.958 50 H 0.064 0.936 51 H 0.077 0.923 52 H 0.066 0.934 53 H 0.099 0.901 54 H 0.089 0.911 55 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.445 16.366 -2.230 16.524 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.285 5.285 3 C -0.124 4.124 4 C -0.064 4.064 5 C -0.150 4.150 6 C -0.001 4.001 7 N -0.322 5.322 8 C 0.097 3.903 9 C -0.571 4.571 10 H 0.046 0.954 11 C -0.179 4.179 12 N -0.583 5.583 13 Si 0.760 3.240 14 H -0.185 1.185 15 H -0.212 1.212 16 H -0.164 1.164 17 C 0.340 3.660 18 O -0.449 6.449 19 C -0.273 4.273 20 C -0.057 4.057 21 C -0.032 4.032 22 C -0.192 4.192 23 C -0.219 4.219 24 C -0.007 4.007 25 O -0.323 6.323 26 C -0.017 4.017 27 C -0.179 4.179 28 H 0.045 0.955 29 H 0.099 0.901 30 H 0.091 0.909 31 H 0.079 0.921 32 H 0.100 0.900 33 H 0.043 0.957 34 H 0.099 0.901 35 H 0.051 0.949 36 H 0.073 0.927 37 H 0.083 0.917 38 H 0.091 0.909 39 H 0.081 0.919 40 H 0.059 0.941 41 H 0.063 0.937 42 H 0.076 0.924 43 H 0.155 0.845 44 H 0.174 0.826 45 H 0.102 0.898 46 H 0.085 0.915 47 H 0.072 0.928 48 H 0.112 0.888 49 H 0.061 0.939 50 H 0.082 0.918 51 H 0.095 0.905 52 H 0.084 0.916 53 H 0.117 0.883 54 H 0.107 0.893 55 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -0.670 16.473 -2.294 16.645 hybrid contribution 0.040 -0.927 0.225 0.954 sum -0.631 15.546 -2.069 15.696 Atomic orbital electron populations 1.22432 0.85995 1.02877 1.01045 1.61980 1.09096 1.14421 1.43052 1.22425 1.00727 0.88444 1.00850 1.21971 0.94460 0.98641 0.91353 1.21743 0.95199 0.99898 0.98127 1.21264 0.80274 1.00160 0.98368 1.47875 1.06265 1.22414 1.55645 1.19619 0.95625 0.82967 0.92091 1.21479 1.43964 0.97013 0.94692 0.95388 1.25747 0.94536 0.95137 1.02445 1.70055 1.46632 1.04509 1.37055 0.85860 0.80194 0.78082 0.79820 1.18537 1.21176 1.16438 1.18762 0.87845 0.82217 0.77188 1.90573 1.79882 1.31476 1.42993 1.22774 0.92485 1.01788 1.10205 1.24003 0.98080 0.90169 0.93462 1.19784 0.95806 0.95856 0.91704 1.21905 0.94492 1.02742 1.00078 1.22988 1.03078 0.97630 0.98246 1.22490 0.99442 0.83075 0.95717 1.87866 1.44726 1.17296 1.82409 1.22735 0.93454 0.92557 0.92973 1.22297 1.02652 0.94828 0.98140 0.95471 0.90102 0.90912 0.92149 0.89956 0.95748 0.90069 0.94941 0.92664 0.91668 0.90933 0.91898 0.94139 0.93654 0.92376 0.84482 0.82587 0.89803 0.91491 0.92755 0.88824 0.93915 0.91828 0.90518 0.91581 0.88264 0.89281 0.91059 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.46 9.57 127.69 1.22 1.68 16 2 N -0.56 -13.55 5.02 -948.84 -4.76 -18.31 16 3 C 0.02 0.52 9.32 127.69 1.19 1.71 16 4 C 0.06 1.70 4.96 86.30 0.43 2.13 16 5 C -0.11 -3.44 5.46 30.59 0.17 -3.27 16 6 C 0.12 4.52 5.41 86.38 0.47 4.99 16 7 N -0.59 -24.38 2.46 -830.44 -2.04 -26.42 16 8 C 0.22 9.61 3.98 85.63 0.34 9.95 16 9 C -0.53 -28.67 9.94 25.60 0.25 -28.42 16 10 H 0.03 1.74 8.06 -2.91 -0.02 1.72 16 11 C 0.02 1.09 5.47 84.66 0.46 1.55 16 12 N -0.94 -56.24 13.96 21.45 0.30 -55.94 16 13 Si 0.94 40.27 27.47 68.60 1.88 42.15 16 14 H -0.26 -10.62 7.11 99.48 0.71 -9.91 16 15 H -0.29 -12.36 7.11 99.48 0.71 -11.65 16 16 H -0.24 -9.43 6.54 99.48 0.65 -8.78 16 17 C 0.55 21.94 5.86 86.57 0.51 22.45 16 18 O -0.56 -23.47 10.75 -4.06 -0.04 -23.51 16 19 C -0.25 -9.04 8.36 23.43 0.20 -8.84 16 20 C -0.04 -1.08 8.43 24.52 0.21 -0.88 16 21 C -0.03 -0.89 0.50 -52.81 -0.03 -0.91 16 22 C -0.14 -2.93 7.90 71.98 0.57 -2.36 16 23 C -0.18 -6.51 3.85 30.68 0.12 -6.39 16 24 C 0.07 2.20 6.57 72.01 0.47 2.68 16 25 O -0.40 -13.19 10.77 -148.98 -1.60 -14.79 16 26 C 0.06 1.47 6.57 72.01 0.47 1.94 16 27 C -0.14 -3.74 4.75 30.68 0.15 -3.60 16 28 H 0.03 0.49 8.14 -2.39 -0.02 0.47 16 29 H 0.08 1.27 8.12 -2.39 -0.02 1.25 16 30 H 0.07 1.29 8.12 -2.39 -0.02 1.27 16 31 H 0.06 1.46 6.47 -2.39 -0.02 1.45 16 32 H 0.08 1.48 8.12 -2.39 -0.02 1.46 16 33 H 0.02 0.53 8.14 -2.39 -0.02 0.51 16 34 H 0.08 2.05 8.06 -2.39 -0.02 2.03 16 35 H 0.03 0.87 8.12 -2.39 -0.02 0.85 16 36 H 0.05 1.81 6.55 -2.39 -0.02 1.80 16 37 H 0.06 2.09 8.14 -2.39 -0.02 2.07 16 38 H 0.07 2.71 8.07 -2.38 -0.02 2.69 16 39 H 0.06 2.42 7.42 -2.39 -0.02 2.41 16 40 H 0.04 1.73 7.13 -2.39 -0.02 1.71 16 41 H 0.05 1.88 5.46 -2.38 -0.01 1.87 16 42 H 0.27 14.91 8.31 -92.70 -0.77 14.14 16 43 H 0.14 5.05 6.17 -2.91 -0.02 5.04 16 44 H 0.16 3.32 8.06 -2.91 -0.02 3.29 16 45 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 46 H 0.07 1.37 5.06 -2.39 -0.01 1.36 16 47 H 0.05 1.24 8.13 -2.39 -0.02 1.23 16 48 H 0.09 4.00 3.35 -35.03 -0.12 3.89 16 49 H 0.04 1.68 8.14 -2.39 -0.02 1.67 16 50 H 0.06 1.71 6.46 -2.39 -0.02 1.69 16 51 H 0.08 2.51 8.14 -2.39 -0.02 2.49 16 52 H 0.07 1.34 6.77 -2.39 -0.02 1.32 16 53 H 0.10 2.15 8.14 -2.38 -0.02 2.13 16 54 H 0.09 1.81 8.14 -2.39 -0.02 1.79 16 55 H 0.07 2.40 5.62 -2.38 -0.01 2.39 16 Total: -1.00 -67.07 410.83 1.61 -65.46 By element: Atomic # 1 Polarization: 36.28 SS G_CDS: 0.69 Total: 36.97 kcal Atomic # 6 Polarization: -12.79 SS G_CDS: 7.19 Total: -5.60 kcal Atomic # 7 Polarization: -94.17 SS G_CDS: -6.50 Total: -100.67 kcal Atomic # 8 Polarization: -36.65 SS G_CDS: -1.65 Total: -38.30 kcal Atomic # 14 Polarization: 40.27 SS G_CDS: 1.88 Total: 42.15 kcal Total: -67.07 1.61 -65.46 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000493081014.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.178 kcal (2) G-P(sol) polarization free energy of solvation -67.070 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.893 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.614 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.456 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.279 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.32 seconds