Wall clock time and date at job start Tue Mar 31 2020 20:59:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31506 * 1 3 3 Si 1.86809 * 120.00281 * 2 1 4 4 H 1.48495 * 109.47070 * 240.00014 * 3 2 1 5 5 H 1.48502 * 109.46856 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.46864 * 120.00285 * 3 2 1 7 7 C 1.37877 * 120.00053 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00223 * 180.02562 * 7 2 1 9 9 C 1.50702 * 119.99672 * 359.97438 * 7 2 1 10 10 C 1.53000 * 109.46980 * 180.02562 * 9 7 2 11 11 C 1.53000 * 109.47297 * 179.97438 * 10 9 7 12 12 C 1.53000 * 109.47297 * 180.02562 * 11 10 9 13 13 C 1.50702 * 109.46980 * 180.02562 * 12 11 10 14 14 O 1.21277 * 120.00033 * 359.97438 * 13 12 11 15 15 N 1.34773 * 119.99708 * 180.02562 * 13 12 11 16 16 C 1.46923 * 120.63466 * 359.97438 * 15 13 12 17 17 C 1.53192 * 108.77580 * 126.39189 * 16 15 13 18 18 C 1.53040 * 109.31352 * 54.63966 * 17 16 15 19 19 C 1.53042 * 109.53660 * 298.63720 * 18 17 16 20 20 H 1.09003 * 109.49494 * 301.38065 * 19 18 17 21 21 C 1.52999 * 109.49809 * 181.31691 * 19 18 17 22 22 N 1.46900 * 109.47162 * 177.68033 * 21 19 18 23 23 C 1.47014 * 110.99968 * 183.89562 * 22 21 19 24 24 C 1.53099 * 109.25810 * 182.39304 * 23 22 21 25 25 O 1.43020 * 109.25580 * 303.14755 * 24 23 22 26 26 C 1.43017 * 113.73966 * 58.67085 * 25 24 23 27 27 C 1.47012 * 111.00001 * 307.52595 * 22 21 19 28 28 C 1.46936 * 120.60430 * 179.97438 * 15 13 12 29 29 H 0.97011 * 120.00064 * 359.97438 * 1 2 3 30 30 H 1.08995 * 109.47211 * 60.00172 * 9 7 2 31 31 H 1.09003 * 109.47098 * 300.00117 * 9 7 2 32 32 H 1.09009 * 109.47165 * 60.00028 * 10 9 7 33 33 H 1.08997 * 109.47501 * 300.00495 * 10 9 7 34 34 H 1.08995 * 109.46921 * 59.99955 * 11 10 9 35 35 H 1.09003 * 109.47072 * 300.00094 * 11 10 9 36 36 H 1.09002 * 109.46999 * 60.00498 * 12 11 10 37 37 H 1.08993 * 109.47256 * 300.00202 * 12 11 10 38 38 H 1.09007 * 109.58554 * 6.60555 * 16 15 13 39 39 H 1.08997 * 109.58979 * 246.18441 * 16 15 13 40 40 H 1.09000 * 109.49845 * 294.68265 * 17 16 15 41 41 H 1.09005 * 109.49832 * 174.58871 * 17 16 15 42 42 H 1.08995 * 109.46060 * 178.61006 * 18 17 16 43 43 H 1.09002 * 109.45895 * 58.65296 * 18 17 16 44 44 H 1.08998 * 109.47050 * 57.67499 * 21 19 18 45 45 H 1.09005 * 109.47106 * 297.67652 * 21 19 18 46 46 H 1.09003 * 109.50942 * 62.45320 * 23 22 21 47 47 H 1.09000 * 109.54128 * 302.34290 * 23 22 21 48 48 H 1.08995 * 109.50536 * 183.21455 * 24 23 22 49 49 H 1.08997 * 109.54258 * 63.10061 * 24 23 22 50 50 H 1.09000 * 109.50702 * 61.26219 * 26 25 24 51 51 H 1.08998 * 109.50793 * 181.39557 * 26 25 24 52 52 H 1.09005 * 109.51184 * 297.54657 * 27 22 21 53 53 H 1.09000 * 109.50584 * 57.62875 * 27 22 21 54 54 H 1.08996 * 109.56429 * 113.80089 * 28 15 13 55 55 H 1.09002 * 109.61210 * 353.37210 * 28 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2842 2.7465 0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2509 -2.4991 -0.0005 10 6 2.2451 -3.6621 -0.0005 11 6 1.4801 -4.9871 0.0001 12 6 2.4743 -6.1500 0.0008 13 6 1.7207 -7.4551 0.0008 14 8 0.5080 -7.4551 0.0008 15 7 2.3946 -8.6223 0.0018 16 6 3.8638 -8.6386 0.0024 17 6 4.3468 -9.5037 1.1707 18 6 3.7030 -10.8888 1.0749 19 6 2.1816 -10.7538 1.1705 20 1 1.9176 -10.2735 2.1127 21 6 1.5408 -12.1417 1.1076 22 7 0.0846 -12.0158 1.2552 23 6 -0.5574 -13.3378 1.2923 24 6 -2.0750 -13.1597 1.3864 25 8 -2.3871 -12.3738 2.5399 26 6 -1.7787 -11.0795 2.5365 27 6 -0.2580 -11.2366 2.4539 28 6 1.6734 -9.9025 0.0024 29 1 -0.4851 0.8401 0.0004 30 1 0.6239 -2.5567 -0.8903 31 1 0.6245 -2.5570 0.8897 32 1 2.8718 -3.6043 0.8895 33 1 2.8718 -3.6044 -0.8904 34 1 0.8532 -5.0451 -0.8896 35 1 0.8537 -5.0446 0.8903 36 1 3.1009 -6.0919 0.8908 37 1 3.1010 -6.0928 -0.8891 38 1 4.2404 -7.6224 0.1200 39 1 4.2250 -9.0579 -0.9366 40 1 4.0625 -9.0347 2.1126 41 1 5.4314 -9.6028 1.1259 42 1 4.0642 -11.5144 1.8911 43 1 3.9677 -11.3471 0.1219 44 1 1.9355 -12.7609 1.9131 45 1 1.7700 -12.6045 0.1477 46 1 -0.2012 -13.8913 2.1612 47 1 -0.3112 -13.8883 0.3842 48 1 -2.5515 -14.1363 1.4716 49 1 -2.4390 -12.6539 0.4921 50 1 -2.1333 -10.5129 1.6755 51 1 -2.0408 -10.5517 3.4534 52 1 0.1029 -11.7564 3.3414 53 1 0.2074 -10.2528 2.3938 54 1 1.8557 -10.4245 -0.9369 55 1 0.6052 -9.7205 0.1204 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000588166452.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:59:50 Heat of formation + Delta-G solvation = -123.694756 kcal Electronic energy + Delta-G solvation = -30125.611147 eV Core-core repulsion = 26160.429654 eV Total energy + Delta-G solvation = -3965.181493 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 2.50 seconds Orbital eigenvalues (eV) -41.41483 -40.53778 -38.80532 -36.84061 -36.62446 -34.66157 -34.03565 -32.57154 -32.06053 -31.42704 -28.92900 -27.73818 -26.14416 -25.57820 -25.10512 -23.84705 -22.93094 -21.82156 -21.55986 -20.85866 -19.79675 -18.43133 -17.96823 -17.62429 -17.16969 -16.97976 -16.91427 -16.49788 -16.19204 -16.07961 -15.82959 -15.66369 -15.29718 -15.25471 -14.88843 -14.53438 -14.37753 -14.10167 -14.00443 -13.58864 -13.55381 -13.49099 -13.31529 -13.12490 -12.79363 -12.77811 -12.55550 -12.39358 -12.35287 -12.16114 -12.13967 -11.95382 -11.78282 -11.70851 -11.43561 -11.38177 -11.36816 -11.30397 -11.11995 -10.73162 -10.63638 -10.54158 -9.61529 -9.37666 -8.17990 -6.30430 1.40432 1.44767 1.52586 1.65299 2.04776 2.42403 2.70232 2.90302 3.14413 3.58261 3.66222 3.81358 3.88798 3.94733 4.01909 4.02169 4.09764 4.11879 4.12994 4.14545 4.26375 4.34991 4.39320 4.54267 4.59022 4.63561 4.65583 4.66188 4.67950 4.71415 4.75187 4.76377 4.80927 4.85387 4.86637 4.94781 4.96916 4.99020 5.12010 5.16059 5.18336 5.25198 5.33686 5.37132 5.45506 5.56401 5.63123 5.78030 5.88105 5.89847 5.97935 6.11812 6.25489 6.43038 6.87789 7.22517 7.39057 8.94065 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.015159 B = 0.001995 C = 0.001808 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1846.664604 B =14035.169718 C =15479.264067 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.938 5.938 2 C -0.008 4.008 3 Si 0.971 3.029 4 H -0.264 1.264 5 H -0.286 1.286 6 H -0.264 1.264 7 C -0.542 4.542 8 H 0.067 0.933 9 C 0.019 3.981 10 C -0.094 4.094 11 C -0.094 4.094 12 C -0.126 4.126 13 C 0.508 3.492 14 O -0.589 6.589 15 N -0.613 5.613 16 C 0.096 3.904 17 C -0.131 4.131 18 C -0.109 4.109 19 C -0.096 4.096 20 H 0.061 0.939 21 C 0.067 3.933 22 N -0.549 5.549 23 C 0.022 3.978 24 C 0.056 3.944 25 O -0.405 6.405 26 C 0.061 3.939 27 C 0.023 3.977 28 C 0.125 3.875 29 H 0.263 0.737 30 H -0.016 1.016 31 H -0.017 1.017 32 H 0.061 0.939 33 H 0.061 0.939 34 H 0.041 0.959 35 H 0.040 0.960 36 H 0.115 0.885 37 H 0.116 0.884 38 H 0.098 0.902 39 H 0.087 0.913 40 H 0.056 0.944 41 H 0.101 0.899 42 H 0.076 0.924 43 H 0.079 0.921 44 H 0.047 0.953 45 H 0.093 0.907 46 H 0.043 0.957 47 H 0.104 0.896 48 H 0.117 0.883 49 H 0.053 0.947 50 H 0.047 0.953 51 H 0.104 0.896 52 H 0.043 0.957 53 H 0.080 0.920 54 H 0.072 0.928 55 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.241 -33.367 2.688 35.007 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.205 4.205 3 Si 0.794 3.206 4 H -0.189 1.189 5 H -0.211 1.211 6 H -0.189 1.189 7 C -0.580 4.580 8 H 0.085 0.915 9 C -0.018 4.018 10 C -0.132 4.132 11 C -0.133 4.133 12 C -0.166 4.166 13 C 0.298 3.702 14 O -0.469 6.469 15 N -0.346 5.346 16 C -0.025 4.025 17 C -0.169 4.169 18 C -0.147 4.147 19 C -0.115 4.115 20 H 0.079 0.921 21 C -0.060 4.060 22 N -0.274 5.274 23 C -0.106 4.106 24 C -0.020 4.020 25 O -0.324 6.324 26 C -0.016 4.016 27 C -0.105 4.105 28 C 0.003 3.997 29 H 0.071 0.929 30 H 0.002 0.998 31 H 0.002 0.998 32 H 0.080 0.920 33 H 0.080 0.920 34 H 0.059 0.941 35 H 0.059 0.941 36 H 0.133 0.867 37 H 0.134 0.866 38 H 0.117 0.883 39 H 0.105 0.895 40 H 0.075 0.925 41 H 0.119 0.881 42 H 0.095 0.905 43 H 0.098 0.902 44 H 0.065 0.935 45 H 0.111 0.889 46 H 0.061 0.939 47 H 0.122 0.878 48 H 0.135 0.865 49 H 0.072 0.928 50 H 0.065 0.935 51 H 0.122 0.878 52 H 0.061 0.939 53 H 0.098 0.902 54 H 0.090 0.910 55 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 9.174 -33.090 2.417 34.423 hybrid contribution -0.037 0.850 0.524 0.999 sum 9.136 -32.240 2.940 33.639 Atomic orbital electron populations 1.70132 1.08099 1.27810 1.51811 1.26119 0.95806 1.03814 0.94804 0.85422 0.78152 0.77612 0.79374 1.18851 1.21124 1.18861 1.21721 0.93756 0.92155 1.50324 0.91482 1.19052 0.94686 0.93853 0.94234 1.21441 0.97788 0.92633 1.01320 1.21237 0.97456 0.93721 1.00837 1.21686 0.98942 0.89761 1.06165 1.21215 0.87614 0.86662 0.74731 1.90679 1.16400 1.88000 1.51843 1.48304 1.08267 1.05285 1.72737 1.22092 0.77383 1.02881 1.00188 1.21906 1.01882 0.95293 0.97824 1.21527 0.92239 0.97371 1.03520 1.21577 0.96797 0.95040 0.98124 0.92088 1.22161 0.85510 0.95925 1.02422 1.62244 1.10498 1.16394 1.38308 1.22790 0.95121 0.89985 1.02654 1.22856 0.94484 0.96568 0.88120 1.87954 1.72443 1.27956 1.44039 1.22684 0.91581 0.84687 1.02612 1.22713 0.96764 0.99398 0.91657 1.21500 0.96992 0.82790 0.98440 0.92863 0.99806 0.99821 0.92041 0.92011 0.94056 0.94076 0.86677 0.86601 0.88347 0.89515 0.92481 0.88056 0.90501 0.90218 0.93484 0.88916 0.93855 0.87756 0.86487 0.92842 0.93476 0.87805 0.93910 0.90159 0.90973 0.91504 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.66 13.29 21.45 0.28 -59.38 16 2 C -0.01 -0.49 5.46 84.66 0.46 -0.03 16 3 Si 0.97 45.05 29.54 68.60 2.03 47.08 16 4 H -0.26 -11.61 7.11 99.48 0.71 -10.90 16 5 H -0.29 -13.06 7.11 99.48 0.71 -12.36 16 6 H -0.26 -11.61 7.11 99.48 0.71 -10.90 16 7 C -0.54 -31.68 9.11 25.60 0.23 -31.44 16 8 H 0.07 3.65 7.74 -2.91 -0.02 3.63 16 9 C 0.02 1.05 4.97 29.85 0.15 1.20 16 10 C -0.09 -3.92 5.15 30.59 0.16 -3.76 16 11 C -0.09 -3.53 4.50 30.59 0.14 -3.39 16 12 C -0.13 -3.29 4.05 29.85 0.12 -3.17 16 13 C 0.51 14.76 7.70 87.66 0.67 15.43 16 14 O -0.59 -23.13 15.39 -3.02 -0.05 -23.17 16 15 N -0.61 -12.62 2.97 -818.85 -2.43 -15.06 16 16 C 0.10 1.16 6.34 86.36 0.55 1.71 16 17 C -0.13 -1.17 6.08 30.67 0.19 -0.99 16 18 C -0.11 -0.92 5.17 30.62 0.16 -0.76 16 19 C -0.10 -1.30 1.86 -10.71 -0.02 -1.32 16 20 H 0.06 1.06 6.12 -2.39 -0.01 1.04 16 21 C 0.07 0.79 4.55 86.30 0.39 1.19 16 22 N -0.55 -8.79 4.29 -895.21 -3.84 -12.63 16 23 C 0.02 0.29 5.66 86.31 0.49 0.78 16 24 C 0.06 0.85 7.01 72.02 0.50 1.36 16 25 O -0.40 -8.57 10.83 -148.98 -1.61 -10.18 16 26 C 0.06 1.25 7.01 72.01 0.50 1.76 16 27 C 0.02 0.42 5.15 86.31 0.44 0.86 16 28 C 0.13 2.44 5.45 86.37 0.47 2.91 16 29 H 0.26 15.67 8.31 -92.70 -0.77 14.90 16 30 H -0.02 -1.01 8.14 -2.39 -0.02 -1.03 16 31 H -0.02 -1.02 8.14 -2.39 -0.02 -1.04 16 32 H 0.06 2.37 8.14 -2.38 -0.02 2.35 16 33 H 0.06 2.38 8.14 -2.39 -0.02 2.36 16 34 H 0.04 1.70 8.10 -2.39 -0.02 1.68 16 35 H 0.04 1.69 8.10 -2.39 -0.02 1.67 16 36 H 0.12 2.42 7.69 -2.39 -0.02 2.40 16 37 H 0.12 2.43 7.94 -2.39 -0.02 2.41 16 38 H 0.10 1.04 5.93 -2.38 -0.01 1.03 16 39 H 0.09 0.79 8.14 -2.39 -0.02 0.77 16 40 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 41 H 0.10 0.49 8.14 -2.38 -0.02 0.47 16 42 H 0.08 0.52 8.14 -2.39 -0.02 0.50 16 43 H 0.08 0.52 8.14 -2.39 -0.02 0.50 16 44 H 0.05 0.49 8.14 -2.39 -0.02 0.47 16 45 H 0.09 0.87 8.14 -2.38 -0.02 0.85 16 46 H 0.04 0.55 8.14 -2.39 -0.02 0.53 16 47 H 0.10 0.94 8.14 -2.39 -0.02 0.92 16 48 H 0.12 1.22 8.14 -2.39 -0.02 1.21 16 49 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16 50 H 0.05 1.10 8.14 -2.39 -0.02 1.08 16 51 H 0.10 1.91 8.14 -2.39 -0.02 1.89 16 52 H 0.04 0.75 8.14 -2.38 -0.02 0.73 16 53 H 0.08 1.67 5.85 -2.39 -0.01 1.66 16 54 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 55 H 0.07 1.81 6.61 -2.39 -0.02 1.79 16 Total: -1.00 -78.49 419.94 0.81 -77.67 By element: Atomic # 1 Polarization: 12.52 SS G_CDS: 0.82 Total: 13.34 kcal Atomic # 6 Polarization: -23.29 SS G_CDS: 5.61 Total: -17.67 kcal Atomic # 7 Polarization: -81.07 SS G_CDS: -5.99 Total: -87.06 kcal Atomic # 8 Polarization: -31.70 SS G_CDS: -1.66 Total: -33.36 kcal Atomic # 14 Polarization: 45.05 SS G_CDS: 2.03 Total: 47.08 kcal Total: -78.49 0.81 -77.67 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588166452.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.022 kcal (2) G-P(sol) polarization free energy of solvation -78.487 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.510 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.815 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.673 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.695 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.51 seconds