Wall clock time and date at job start Tue Mar 31 2020 21:11:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86792 * 120.00214 * 2 1 4 4 H 1.48504 * 109.47263 * 179.97438 * 3 2 1 5 5 H 1.48502 * 109.47216 * 299.99775 * 3 2 1 6 6 H 1.48500 * 109.47404 * 59.99737 * 3 2 1 7 7 C 1.37881 * 119.99512 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99407 * 180.02562 * 7 2 1 9 9 C 1.50691 * 120.00293 * 0.02562 * 7 2 1 10 10 C 1.53004 * 109.47297 * 179.97438 * 9 7 2 11 11 C 1.53002 * 109.47280 * 180.02562 * 10 9 7 12 12 C 1.52998 * 109.47022 * 180.02562 * 11 10 9 13 13 C 1.50704 * 109.46827 * 180.02562 * 12 11 10 14 14 O 1.21275 * 120.00166 * 359.97438 * 13 12 11 15 15 N 1.34780 * 119.99769 * 179.97438 * 13 12 11 16 16 C 1.46921 * 120.63025 * 179.97438 * 15 13 12 17 17 C 1.53192 * 108.77565 * 233.63161 * 16 15 13 18 18 C 1.53046 * 109.31128 * 305.36180 * 17 16 15 19 19 C 1.52995 * 109.46027 * 181.38838 * 18 17 16 20 20 N 1.46898 * 109.46888 * 175.00121 * 19 18 17 21 21 C 1.47007 * 111.00274 * 293.63073 * 20 19 18 22 22 C 1.53100 * 109.26056 * 177.60967 * 21 20 19 23 23 O 1.43005 * 109.26032 * 56.84851 * 22 21 20 24 24 C 1.43018 * 113.73896 * 301.33263 * 23 22 21 25 25 C 1.47016 * 111.00157 * 169.99632 * 20 19 18 26 26 C 1.53046 * 109.53579 * 61.36447 * 18 17 16 27 27 C 1.46928 * 120.63038 * 0.02562 * 15 13 12 28 28 H 0.97003 * 119.99514 * 0.02562 * 1 2 3 29 29 H 1.09001 * 109.47661 * 59.99792 * 9 7 2 30 30 H 1.08999 * 109.47455 * 300.00179 * 9 7 2 31 31 H 1.09003 * 109.46916 * 60.00336 * 10 9 7 32 32 H 1.08993 * 109.46780 * 300.00149 * 10 9 7 33 33 H 1.09000 * 109.47255 * 59.99588 * 11 10 9 34 34 H 1.08998 * 109.46911 * 300.00378 * 11 10 9 35 35 H 1.08994 * 109.47496 * 59.99846 * 12 11 10 36 36 H 1.09000 * 109.46758 * 299.99155 * 12 11 10 37 37 H 1.08996 * 109.58905 * 113.84216 * 16 15 13 38 38 H 1.09008 * 109.58585 * 353.41416 * 16 15 13 39 39 H 1.09002 * 109.49998 * 185.41388 * 17 16 15 40 40 H 1.08995 * 109.50229 * 65.31205 * 17 16 15 41 41 H 1.09000 * 109.45949 * 301.34958 * 18 17 16 42 42 H 1.09005 * 109.47216 * 295.00051 * 19 18 17 43 43 H 1.08997 * 109.47320 * 55.00171 * 19 18 17 44 44 H 1.08998 * 109.51057 * 297.54351 * 21 20 19 45 45 H 1.09005 * 109.50440 * 57.67811 * 21 20 19 46 46 H 1.09009 * 109.50594 * 296.91386 * 22 21 20 47 47 H 1.09001 * 109.54125 * 176.81386 * 22 21 20 48 48 H 1.08993 * 109.50517 * 298.73070 * 24 23 22 49 49 H 1.09006 * 109.54386 * 178.62282 * 24 23 22 50 50 H 1.09007 * 109.50838 * 302.33253 * 25 20 19 51 51 H 1.09008 * 109.50609 * 62.41264 * 25 20 19 52 52 H 1.09001 * 109.49519 * 58.58791 * 26 18 17 53 53 H 1.08996 * 109.49601 * 178.68448 * 26 18 17 54 54 H 1.09000 * 109.58351 * 246.16146 * 27 15 13 55 55 H 1.08999 * 109.58293 * 6.58356 * 27 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8906 2.3963 -1.2125 6 1 1.8905 2.3964 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4991 0.0005 10 6 2.2452 -3.6622 0.0005 11 6 1.4801 -4.9872 -0.0001 12 6 2.4743 -6.1501 0.0005 13 6 1.7207 -7.4552 -0.0007 14 8 0.5080 -7.4551 -0.0016 15 7 2.3946 -8.6224 -0.0010 16 6 1.6740 -9.9028 -0.0016 17 6 2.1813 -10.7547 1.1661 18 6 3.7028 -10.8898 1.0705 19 6 4.2094 -11.7688 2.2157 20 7 5.6518 -11.9970 2.0565 21 6 5.9288 -12.8018 0.8579 22 6 7.4427 -12.9647 0.6977 23 8 7.9815 -13.5559 1.8831 24 6 7.7308 -12.7979 3.0697 25 6 6.2199 -12.6334 3.2539 26 6 4.3466 -9.5047 1.1676 27 6 3.8638 -8.6386 0.0006 28 1 -0.4849 0.8401 -0.0004 29 1 0.6246 -2.5571 -0.8896 30 1 0.6240 -2.5567 0.8902 31 1 2.8718 -3.6045 0.8906 32 1 2.8718 -3.6044 -0.8894 33 1 0.8537 -5.0446 -0.8903 34 1 0.8532 -5.0451 0.8896 35 1 3.1004 -6.0925 0.8909 36 1 3.1015 -6.0923 -0.8891 37 1 1.8568 -10.4245 -0.9410 38 1 0.6056 -9.7209 0.1159 39 1 1.7248 -11.7435 1.1204 40 1 1.9172 -10.2747 2.1084 41 1 3.9676 -11.3473 0.1173 42 1 4.0233 -11.2696 3.1667 43 1 3.6863 -12.7248 2.1987 44 1 5.4664 -13.7831 0.9635 45 1 5.5220 -12.2994 -0.0198 46 1 7.8991 -11.9876 0.5385 47 1 7.6518 -13.6077 -0.1572 48 1 8.1955 -11.8162 2.9795 49 1 8.1476 -13.3201 3.9310 50 1 6.0253 -12.0082 4.1254 51 1 5.7614 -13.6118 3.3983 52 1 4.0621 -9.0365 2.1098 53 1 5.4312 -9.6038 1.1229 54 1 4.2255 -9.0569 -0.9387 55 1 4.2402 -7.6227 0.1196 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000588295723.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:11:18 Heat of formation + Delta-G solvation = -125.595222 kcal Electronic energy + Delta-G solvation = -29552.638377 eV Core-core repulsion = 25587.374474 eV Total energy + Delta-G solvation = -3965.263903 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -41.33452 -40.51553 -38.81875 -36.80134 -36.57168 -34.67074 -34.04470 -32.32798 -32.06176 -31.23271 -29.48005 -27.66231 -26.42766 -25.00640 -24.53442 -24.06567 -23.11682 -21.83147 -21.44799 -21.01859 -19.80057 -18.43509 -17.99092 -17.52792 -17.07179 -16.94611 -16.82675 -16.44553 -16.14623 -15.96478 -15.89689 -15.73587 -15.24360 -15.01704 -14.81999 -14.55047 -14.43282 -14.21784 -14.05851 -13.63690 -13.57364 -13.32135 -13.22553 -13.07081 -12.84232 -12.79299 -12.52643 -12.31566 -12.29738 -12.18142 -12.14922 -12.11193 -11.71462 -11.61061 -11.38175 -11.37818 -11.34091 -11.25134 -11.09009 -10.67949 -10.61495 -10.55281 -9.62430 -9.35304 -8.18268 -6.30372 1.40826 1.41854 1.55388 1.63929 2.04248 2.42408 2.74658 2.99753 3.14418 3.58204 3.69771 3.81542 3.96887 3.97860 4.02902 4.06868 4.12640 4.17217 4.22654 4.25914 4.31179 4.39109 4.40849 4.49449 4.59145 4.66503 4.66692 4.69335 4.71447 4.77054 4.79682 4.84400 4.85803 4.89162 4.90448 4.94240 5.01916 5.02671 5.06646 5.12928 5.18766 5.29055 5.34943 5.37447 5.48672 5.57102 5.65823 5.78385 5.88473 5.98537 5.99770 6.21883 6.25829 6.40887 6.88221 7.20613 7.39178 8.94164 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.017452 B = 0.001699 C = 0.001594 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1604.033348 B =16472.690590 C =17556.889192 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.938 5.938 2 C -0.008 4.008 3 Si 0.971 3.029 4 H -0.257 1.257 5 H -0.279 1.279 6 H -0.279 1.279 7 C -0.540 4.540 8 H 0.067 0.933 9 C 0.018 3.982 10 C -0.095 4.095 11 C -0.095 4.095 12 C -0.126 4.126 13 C 0.509 3.491 14 O -0.592 6.592 15 N -0.611 5.611 16 C 0.108 3.892 17 C -0.120 4.120 18 C -0.075 4.075 19 C 0.065 3.935 20 N -0.537 5.537 21 C 0.017 3.983 22 C 0.060 3.940 23 O -0.410 6.410 24 C 0.062 3.938 25 C 0.019 3.981 26 C -0.113 4.113 27 C 0.099 3.901 28 H 0.262 0.738 29 H -0.016 1.016 30 H -0.016 1.016 31 H 0.061 0.939 32 H 0.061 0.939 33 H 0.041 0.959 34 H 0.040 0.960 35 H 0.115 0.885 36 H 0.117 0.883 37 H 0.081 0.919 38 H 0.065 0.935 39 H 0.087 0.913 40 H 0.054 0.946 41 H 0.083 0.917 42 H 0.074 0.926 43 H 0.036 0.964 44 H 0.034 0.966 45 H 0.101 0.899 46 H 0.062 0.938 47 H 0.108 0.892 48 H 0.061 0.939 49 H 0.108 0.892 50 H 0.094 0.906 51 H 0.035 0.965 52 H 0.054 0.946 53 H 0.096 0.904 54 H 0.086 0.914 55 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.792 -32.933 3.504 37.596 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.205 4.205 3 Si 0.795 3.205 4 H -0.180 1.180 5 H -0.205 1.205 6 H -0.205 1.205 7 C -0.578 4.578 8 H 0.085 0.915 9 C -0.019 4.019 10 C -0.132 4.132 11 C -0.133 4.133 12 C -0.166 4.166 13 C 0.299 3.701 14 O -0.473 6.473 15 N -0.344 5.344 16 C -0.014 4.014 17 C -0.159 4.159 18 C -0.094 4.094 19 C -0.062 4.062 20 N -0.262 5.262 21 C -0.111 4.111 22 C -0.017 4.017 23 O -0.329 6.329 24 C -0.015 4.015 25 C -0.110 4.110 26 C -0.151 4.151 27 C -0.023 4.023 28 H 0.071 0.929 29 H 0.003 0.997 30 H 0.002 0.998 31 H 0.079 0.921 32 H 0.080 0.920 33 H 0.060 0.940 34 H 0.059 0.941 35 H 0.133 0.867 36 H 0.135 0.865 37 H 0.099 0.901 38 H 0.083 0.917 39 H 0.105 0.895 40 H 0.073 0.927 41 H 0.101 0.899 42 H 0.092 0.908 43 H 0.054 0.946 44 H 0.052 0.948 45 H 0.119 0.881 46 H 0.081 0.919 47 H 0.126 0.874 48 H 0.080 0.920 49 H 0.126 0.874 50 H 0.113 0.887 51 H 0.053 0.947 52 H 0.073 0.927 53 H 0.114 0.886 54 H 0.104 0.896 55 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 17.371 -32.568 3.448 37.072 hybrid contribution -1.101 0.453 0.219 1.211 sum 16.270 -32.115 3.667 36.187 Atomic orbital electron populations 1.70149 1.08072 1.27650 1.51962 1.26112 0.95806 1.03785 0.94824 0.85317 0.79213 0.78349 0.77654 1.18026 1.20482 1.20513 1.21782 0.93773 0.92164 1.50083 0.91502 1.19068 0.94713 0.93857 0.94304 1.21443 0.97798 0.92638 1.01340 1.21245 0.97470 0.93727 1.00875 1.21684 0.98941 0.89732 1.06207 1.21216 0.87552 0.86721 0.74612 1.90671 1.16473 1.88042 1.52116 1.48274 1.08268 1.05173 1.72668 1.21607 0.96913 0.83424 0.99495 1.21864 0.96133 1.00156 0.97726 1.21096 0.93408 0.95833 0.99053 1.22112 0.86576 0.98249 0.99308 1.62204 1.13894 1.47182 1.02938 1.22852 0.97358 0.96117 0.94752 1.22798 0.91881 0.99350 0.87639 1.87961 1.78086 1.50197 1.16645 1.22763 0.94046 0.96785 0.87903 1.22788 0.96127 0.98080 0.93961 1.21798 1.01799 0.94093 0.97446 1.22073 0.77215 1.02802 1.00169 0.92891 0.99723 0.99754 0.92055 0.91992 0.93969 0.94071 0.86700 0.86533 0.90107 0.91686 0.89482 0.92693 0.89886 0.90768 0.94591 0.94787 0.88113 0.91934 0.87369 0.92044 0.87377 0.88750 0.94684 0.92744 0.88565 0.89593 0.88436 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.43 13.29 21.45 0.28 -59.14 16 2 C -0.01 -0.49 5.46 84.65 0.46 -0.03 16 3 Si 0.97 45.05 29.54 68.60 2.03 47.07 16 4 H -0.26 -11.13 7.11 99.48 0.71 -10.42 16 5 H -0.28 -12.63 7.11 99.48 0.71 -11.93 16 6 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 7 C -0.54 -31.56 9.11 25.60 0.23 -31.32 16 8 H 0.07 3.66 7.74 -2.91 -0.02 3.64 16 9 C 0.02 0.99 4.97 29.85 0.15 1.13 16 10 C -0.09 -3.93 5.15 30.60 0.16 -3.77 16 11 C -0.09 -3.54 4.50 30.59 0.14 -3.40 16 12 C -0.13 -3.28 4.05 29.85 0.12 -3.16 16 13 C 0.51 14.62 7.70 87.66 0.67 15.29 16 14 O -0.59 -23.03 15.39 -3.01 -0.05 -23.08 16 15 N -0.61 -12.25 2.97 -819.01 -2.43 -14.69 16 16 C 0.11 1.92 6.43 86.36 0.56 2.48 16 17 C -0.12 -1.52 5.36 30.67 0.16 -1.35 16 18 C -0.08 -0.71 2.08 -10.76 -0.02 -0.73 16 19 C 0.07 0.61 4.35 86.30 0.38 0.99 16 20 N -0.54 -5.22 4.15 -895.22 -3.72 -8.94 16 21 C 0.02 0.15 5.44 86.32 0.47 0.62 16 22 C 0.06 0.57 7.01 72.02 0.50 1.08 16 23 O -0.41 -5.77 10.83 -148.98 -1.61 -7.38 16 24 C 0.06 0.61 7.01 72.01 0.50 1.12 16 25 C 0.02 0.18 5.64 86.31 0.49 0.66 16 26 C -0.11 -1.20 5.26 30.65 0.16 -1.04 16 27 C 0.10 1.23 6.34 86.34 0.55 1.77 16 28 H 0.26 15.53 8.31 -92.71 -0.77 14.76 16 29 H -0.02 -0.95 8.14 -2.39 -0.02 -0.97 16 30 H -0.02 -0.97 8.14 -2.39 -0.02 -0.99 16 31 H 0.06 2.36 8.14 -2.39 -0.02 2.34 16 32 H 0.06 2.38 8.14 -2.39 -0.02 2.36 16 33 H 0.04 1.72 8.10 -2.39 -0.02 1.70 16 34 H 0.04 1.68 8.10 -2.39 -0.02 1.66 16 35 H 0.11 2.43 7.69 -2.39 -0.02 2.41 16 36 H 0.12 2.43 7.94 -2.39 -0.02 2.41 16 37 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 38 H 0.06 1.55 7.01 -2.38 -0.02 1.53 16 39 H 0.09 0.86 8.14 -2.39 -0.02 0.84 16 40 H 0.05 0.87 8.14 -2.39 -0.02 0.85 16 41 H 0.08 0.67 6.30 -2.39 -0.02 0.65 16 42 H 0.07 0.77 8.04 -2.38 -0.02 0.75 16 43 H 0.04 0.35 8.12 -2.39 -0.02 0.33 16 44 H 0.03 0.36 8.14 -2.39 -0.02 0.34 16 45 H 0.10 0.65 6.29 -2.38 -0.01 0.63 16 46 H 0.06 0.57 8.14 -2.38 -0.02 0.55 16 47 H 0.11 0.73 8.14 -2.39 -0.02 0.71 16 48 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 49 H 0.11 0.77 8.14 -2.38 -0.02 0.75 16 50 H 0.09 0.74 8.09 -2.38 -0.02 0.72 16 51 H 0.03 0.38 8.14 -2.38 -0.02 0.36 16 52 H 0.05 0.73 8.14 -2.39 -0.02 0.71 16 53 H 0.10 0.90 7.71 -2.39 -0.02 0.88 16 54 H 0.09 0.80 8.14 -2.39 -0.02 0.78 16 55 H 0.10 1.10 5.93 -2.39 -0.01 1.08 16 Total: -1.00 -77.61 420.86 1.00 -76.60 By element: Atomic # 1 Polarization: 8.38 SS G_CDS: 0.82 Total: 9.20 kcal Atomic # 6 Polarization: -25.34 SS G_CDS: 5.68 Total: -19.65 kcal Atomic # 7 Polarization: -76.90 SS G_CDS: -5.87 Total: -82.77 kcal Atomic # 8 Polarization: -28.80 SS G_CDS: -1.66 Total: -30.46 kcal Atomic # 14 Polarization: 45.05 SS G_CDS: 2.03 Total: 47.07 kcal Total: -77.61 1.00 -76.60 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588295723.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.991 kcal (2) G-P(sol) polarization free energy of solvation -77.607 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.598 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.003 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.604 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.595 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds