Wall clock time and date at job start Tue Mar 31 2020 20:57:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86797 * 119.99818 * 2 1 4 4 H 1.48497 * 109.47354 * 240.00097 * 3 2 1 5 5 H 1.48500 * 109.47146 * 0.02562 * 3 2 1 6 6 H 1.48508 * 109.46823 * 120.00602 * 3 2 1 7 7 C 1.37878 * 119.99902 * 180.02562 * 2 1 3 8 8 H 1.08008 * 119.99634 * 179.97438 * 7 2 1 9 9 C 1.50690 * 120.00141 * 359.97438 * 7 2 1 10 10 C 1.53000 * 109.47108 * 180.02562 * 9 7 2 11 11 C 1.53004 * 109.47328 * 180.02562 * 10 9 7 12 12 C 1.53000 * 109.47328 * 180.02562 * 11 10 9 13 13 C 1.50703 * 109.47049 * 180.02562 * 12 11 10 14 14 O 1.21279 * 120.00418 * 359.97438 * 13 12 11 15 15 N 1.34775 * 119.99986 * 180.02562 * 13 12 11 16 16 C 1.47601 * 118.64261 * 359.97438 * 15 13 12 17 17 C 1.53948 * 112.14400 * 222.13235 * 16 15 13 18 18 C 1.50876 * 110.09716 * 40.56385 * 17 16 15 19 19 C 1.52573 * 109.36141 * 268.11782 * 18 17 16 20 20 H 1.09000 * 108.51328 * 323.91303 * 19 18 17 21 21 N 1.46894 * 108.51330 * 206.26096 * 19 18 17 22 22 C 1.47022 * 111.00213 * 298.89839 * 21 19 18 23 23 C 1.53097 * 109.25938 * 177.60453 * 22 21 19 24 24 O 1.43018 * 109.25485 * 56.85574 * 23 22 21 25 25 C 1.43021 * 113.73649 * 301.32594 * 24 23 22 26 26 C 1.47013 * 111.00069 * 175.26735 * 21 19 18 27 27 C 1.47095 * 114.32112 * 85.00581 * 19 18 17 28 28 C 1.44579 * 118.64703 * 179.97438 * 15 13 12 29 29 H 0.97001 * 120.00488 * 359.97438 * 1 2 3 30 30 H 1.09006 * 109.47658 * 60.00415 * 9 7 2 31 31 H 1.08997 * 109.47574 * 300.00437 * 9 7 2 32 32 H 1.09001 * 109.47510 * 59.99958 * 10 9 7 33 33 H 1.08996 * 109.47247 * 299.99750 * 10 9 7 34 34 H 1.08997 * 109.47037 * 60.00020 * 11 10 9 35 35 H 1.09003 * 109.47099 * 299.99965 * 11 10 9 36 36 H 1.08997 * 109.47045 * 60.00025 * 12 11 10 37 37 H 1.09003 * 109.47002 * 300.00025 * 12 11 10 38 38 H 1.09002 * 108.95074 * 101.44898 * 16 15 13 39 39 H 1.09003 * 108.95161 * 342.81940 * 16 15 13 40 40 H 1.09008 * 109.36424 * 280.37193 * 17 16 15 41 41 H 1.08999 * 109.26471 * 160.69526 * 17 16 15 42 42 H 1.08999 * 109.49465 * 148.15140 * 18 17 16 43 43 H 1.09005 * 109.49044 * 28.08145 * 18 17 16 44 44 H 1.09008 * 109.50448 * 57.67155 * 22 21 19 45 45 H 1.09000 * 109.50808 * 297.54987 * 22 21 19 46 46 H 1.08998 * 109.50218 * 176.78403 * 23 22 21 47 47 H 1.08990 * 109.50772 * 296.87415 * 23 22 21 48 48 H 1.08994 * 109.50813 * 178.61200 * 25 24 23 49 49 H 1.09006 * 109.50405 * 298.73680 * 25 24 23 50 50 H 1.08998 * 109.51079 * 62.45589 * 26 21 19 51 51 H 1.09000 * 109.50621 * 302.32724 * 26 21 19 52 52 H 1.09005 * 109.33071 * 57.46281 * 27 19 18 53 53 H 1.09002 * 109.32647 * 176.93650 * 27 19 18 54 54 H 1.08994 * 109.45040 * 209.31105 * 28 15 13 55 55 H 1.08996 * 109.44399 * 329.25880 * 28 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2840 2.7464 0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 6 2.2453 -3.6620 -0.0005 11 6 1.4803 -4.9871 -0.0012 12 6 2.4746 -6.1500 -0.0005 13 6 1.7211 -7.4551 -0.0018 14 8 0.5083 -7.4552 -0.0026 15 7 2.3950 -8.6223 -0.0010 16 6 3.8705 -8.5873 0.0006 17 6 4.4767 -9.6308 -0.9552 18 6 3.6777 -9.6888 -2.2337 19 6 2.5954 -10.7566 -2.1058 20 1 2.9954 -11.5868 -1.5236 21 7 2.2642 -11.2484 -3.4498 22 6 1.7445 -10.1632 -4.2947 23 6 1.4693 -10.7049 -5.6999 24 8 0.5598 -11.8051 -5.6115 25 6 1.0344 -12.8804 -4.7967 26 6 1.3053 -12.3607 -3.3823 27 6 1.3582 -10.2910 -1.4607 28 6 1.6427 -9.8570 -0.0017 29 1 -0.4851 0.8400 0.0004 30 1 0.6240 -2.5568 -0.8903 31 1 0.6247 -2.5571 0.8896 32 1 2.8720 -3.6043 0.8894 33 1 2.8719 -3.6043 -0.8905 34 1 0.8540 -5.0446 -0.8914 35 1 0.8534 -5.0451 0.8886 36 1 3.1006 -6.0923 0.8899 37 1 3.1019 -6.0922 -0.8901 38 1 4.2282 -8.7834 1.0114 39 1 4.2015 -7.5943 -0.3037 40 1 4.4642 -10.6100 -0.4764 41 1 5.5057 -9.3538 -1.1843 42 1 4.3380 -9.9380 -3.0644 43 1 3.2128 -8.7199 -2.4163 44 1 2.4810 -9.3616 -4.3514 45 1 0.8195 -9.7786 -3.8651 46 1 1.0305 -9.9183 -6.3137 47 1 2.4037 -11.0395 -6.1504 48 1 0.2812 -13.6672 -4.7573 49 1 1.9561 -13.2790 -5.2207 50 1 0.3732 -12.0114 -2.9382 51 1 1.7211 -13.1632 -2.7731 52 1 0.9577 -9.4438 -2.0176 53 1 0.6256 -11.0981 -1.4607 54 1 2.2186 -10.6332 0.5021 55 1 0.6990 -9.7071 0.5227 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597618016.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:57:07 Heat of formation + Delta-G solvation = -112.155825 kcal Electronic energy + Delta-G solvation = -30610.952289 eV Core-core repulsion = 26646.271162 eV Total energy + Delta-G solvation = -3964.681127 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 2.49 seconds Orbital eigenvalues (eV) -41.81753 -40.67851 -38.79062 -36.77671 -36.59944 -34.67865 -33.85679 -33.08214 -32.18772 -31.37843 -28.79700 -27.42055 -27.20213 -25.43391 -25.02738 -24.03094 -22.90946 -21.88659 -21.74132 -20.42911 -19.61238 -18.44135 -18.25086 -17.64832 -17.32575 -17.12665 -16.92100 -16.50237 -16.17270 -16.00919 -15.96837 -15.61502 -15.38709 -15.16183 -14.89766 -14.55479 -14.49484 -14.20795 -13.88515 -13.74109 -13.54530 -13.31535 -13.24976 -13.13312 -12.78656 -12.59318 -12.47804 -12.39451 -12.28532 -12.20422 -12.15144 -12.10528 -11.87438 -11.76354 -11.48887 -11.39501 -11.36477 -11.31867 -11.13811 -10.69778 -10.67986 -10.55168 -9.69142 -9.33804 -8.18992 -6.31540 1.39912 1.44223 1.52072 1.61488 2.04338 2.41676 2.71918 2.94447 3.13457 3.48034 3.60640 3.83673 3.89639 3.97289 3.99227 4.05893 4.08721 4.09352 4.11613 4.21649 4.22262 4.28584 4.34888 4.45900 4.53466 4.60492 4.62522 4.65168 4.66028 4.69458 4.76850 4.79479 4.81708 4.83596 4.88467 4.94172 4.99618 5.04402 5.11010 5.16159 5.20525 5.31736 5.32144 5.34359 5.38392 5.55095 5.70711 5.76305 5.86760 5.91871 5.99782 6.15837 6.24207 6.33269 6.86706 7.20487 7.38072 8.93111 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.015479 B = 0.002059 C = 0.001950 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1808.462603 B =13597.981770 C =14355.226087 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.939 5.939 2 C -0.009 4.009 3 Si 0.971 3.029 4 H -0.264 1.264 5 H -0.286 1.286 6 H -0.263 1.263 7 C -0.541 4.541 8 H 0.067 0.933 9 C 0.019 3.981 10 C -0.094 4.094 11 C -0.095 4.095 12 C -0.127 4.127 13 C 0.503 3.497 14 O -0.589 6.589 15 N -0.601 5.601 16 C 0.095 3.905 17 C -0.121 4.121 18 C -0.105 4.105 19 C 0.092 3.908 20 H 0.096 0.904 21 N -0.529 5.529 22 C 0.016 3.984 23 C 0.064 3.936 24 O -0.411 6.411 25 C 0.061 3.939 26 C 0.011 3.989 27 C -0.159 4.159 28 C 0.123 3.877 29 H 0.263 0.737 30 H -0.018 1.018 31 H -0.017 1.017 32 H 0.062 0.938 33 H 0.061 0.939 34 H 0.038 0.962 35 H 0.040 0.960 36 H 0.118 0.882 37 H 0.115 0.885 38 H 0.086 0.914 39 H 0.094 0.906 40 H 0.082 0.918 41 H 0.101 0.899 42 H 0.081 0.919 43 H 0.043 0.957 44 H 0.090 0.910 45 H 0.021 0.979 46 H 0.100 0.900 47 H 0.069 0.931 48 H 0.110 0.890 49 H 0.066 0.934 50 H 0.033 0.967 51 H 0.105 0.895 52 H 0.035 0.965 53 H 0.074 0.926 54 H 0.106 0.894 55 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.366 -31.533 -5.523 34.692 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.206 4.206 3 Si 0.795 3.205 4 H -0.188 1.188 5 H -0.211 1.211 6 H -0.188 1.188 7 C -0.579 4.579 8 H 0.086 0.914 9 C -0.018 4.018 10 C -0.131 4.131 11 C -0.133 4.133 12 C -0.167 4.167 13 C 0.293 3.707 14 O -0.470 6.470 15 N -0.333 5.333 16 C -0.026 4.026 17 C -0.159 4.159 18 C -0.143 4.143 19 C -0.016 4.016 20 H 0.114 0.886 21 N -0.253 5.253 22 C -0.113 4.113 23 C -0.013 4.013 24 O -0.330 6.330 25 C -0.016 4.016 26 C -0.117 4.117 27 C -0.199 4.199 28 C -0.001 4.001 29 H 0.071 0.929 30 H 0.001 0.999 31 H 0.002 0.998 32 H 0.081 0.919 33 H 0.080 0.920 34 H 0.057 0.943 35 H 0.059 0.941 36 H 0.136 0.864 37 H 0.133 0.867 38 H 0.105 0.895 39 H 0.112 0.888 40 H 0.100 0.900 41 H 0.119 0.881 42 H 0.100 0.900 43 H 0.062 0.938 44 H 0.109 0.891 45 H 0.039 0.961 46 H 0.119 0.881 47 H 0.087 0.913 48 H 0.128 0.872 49 H 0.085 0.915 50 H 0.051 0.949 51 H 0.123 0.877 52 H 0.054 0.946 53 H 0.093 0.907 54 H 0.124 0.876 55 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 12.881 -31.664 -5.840 34.679 hybrid contribution -1.272 1.525 0.485 2.044 sum 11.609 -30.139 -5.355 32.739 Atomic orbital electron populations 1.70131 1.08124 1.27828 1.51820 1.26126 0.95803 1.03847 0.94785 0.85417 0.78147 0.77567 0.79403 1.18830 1.21145 1.18815 1.21717 0.93766 0.92123 1.50324 0.91439 1.19050 0.94685 0.93910 0.94174 1.21437 0.97772 0.92578 1.01360 1.21239 0.97477 0.93870 1.00695 1.21718 0.98912 0.89830 1.06200 1.21284 0.87614 0.87048 0.74762 1.90683 1.16552 1.88171 1.51584 1.47846 1.07972 1.04983 1.72524 1.22393 0.76453 1.02235 1.01537 1.21696 1.00182 0.99819 0.94211 1.21094 0.96767 0.97221 0.99231 1.20737 0.94183 0.98385 0.88249 0.88591 1.62769 1.41771 1.08343 1.12461 1.22764 0.98772 0.95028 0.94697 1.22733 0.94073 0.89121 0.95378 1.87969 1.45617 1.29086 1.70316 1.22821 1.00807 0.89090 0.88868 1.22902 0.94814 0.95222 0.98739 1.21833 0.99809 1.00838 0.97403 1.21280 0.96702 0.86319 0.95817 0.92864 0.99926 0.99842 0.91910 0.92047 0.94333 0.94083 0.86410 0.86704 0.89544 0.88814 0.89980 0.88052 0.90046 0.93775 0.89124 0.96114 0.88145 0.91297 0.87203 0.91527 0.94901 0.87655 0.94575 0.90738 0.87587 0.92577 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.67 13.29 21.45 0.28 -59.39 16 2 C -0.01 -0.50 5.46 84.66 0.46 -0.04 16 3 Si 0.97 44.96 29.54 68.60 2.03 46.99 16 4 H -0.26 -11.57 7.11 99.48 0.71 -10.86 16 5 H -0.29 -13.05 7.11 99.48 0.71 -12.35 16 6 H -0.26 -11.55 7.11 99.48 0.71 -10.85 16 7 C -0.54 -31.59 9.11 25.60 0.23 -31.36 16 8 H 0.07 3.66 7.74 -2.91 -0.02 3.64 16 9 C 0.02 1.06 4.97 29.84 0.15 1.20 16 10 C -0.09 -3.88 5.15 30.60 0.16 -3.72 16 11 C -0.09 -3.52 4.50 30.60 0.14 -3.38 16 12 C -0.13 -3.24 4.03 29.85 0.12 -3.12 16 13 C 0.50 14.13 7.62 87.66 0.67 14.80 16 14 O -0.59 -22.82 15.42 -3.03 -0.05 -22.87 16 15 N -0.60 -11.39 2.24 -818.20 -1.83 -13.22 16 16 C 0.09 1.00 5.95 86.49 0.51 1.51 16 17 C -0.12 -0.86 5.71 30.22 0.17 -0.68 16 18 C -0.11 -1.24 3.74 29.76 0.11 -1.13 16 19 C 0.09 1.20 1.73 42.94 0.07 1.28 16 20 H 0.10 0.96 7.34 -2.39 -0.02 0.94 16 21 N -0.53 -7.78 4.63 -881.67 -4.09 -11.86 16 22 C 0.02 0.28 4.97 86.31 0.43 0.71 16 23 C 0.06 1.05 7.01 72.01 0.50 1.56 16 24 O -0.41 -8.11 10.83 -148.98 -1.61 -9.72 16 25 C 0.06 0.82 7.01 72.01 0.50 1.33 16 26 C 0.01 0.15 5.14 86.31 0.44 0.59 16 27 C -0.16 -2.86 4.36 29.39 0.13 -2.73 16 28 C 0.12 2.20 5.38 87.37 0.47 2.67 16 29 H 0.26 15.67 8.31 -92.71 -0.77 14.90 16 30 H -0.02 -1.08 8.14 -2.38 -0.02 -1.10 16 31 H -0.02 -1.03 8.14 -2.39 -0.02 -1.05 16 32 H 0.06 2.40 8.14 -2.39 -0.02 2.38 16 33 H 0.06 2.35 8.14 -2.39 -0.02 2.33 16 34 H 0.04 1.59 8.10 -2.39 -0.02 1.57 16 35 H 0.04 1.68 8.10 -2.39 -0.02 1.66 16 36 H 0.12 2.37 8.03 -2.39 -0.02 2.35 16 37 H 0.11 2.36 7.41 -2.39 -0.02 2.34 16 38 H 0.09 0.65 8.14 -2.39 -0.02 0.63 16 39 H 0.09 0.92 5.82 -2.39 -0.01 0.90 16 40 H 0.08 0.41 7.32 -2.38 -0.02 0.39 16 41 H 0.10 0.41 8.14 -2.39 -0.02 0.39 16 42 H 0.08 0.93 8.04 -2.39 -0.02 0.91 16 43 H 0.04 0.73 7.12 -2.38 -0.02 0.71 16 44 H 0.09 1.52 6.77 -2.38 -0.02 1.50 16 45 H 0.02 0.48 6.53 -2.39 -0.02 0.46 16 46 H 0.10 1.53 8.14 -2.39 -0.02 1.51 16 47 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 48 H 0.11 1.12 8.14 -2.39 -0.02 1.10 16 49 H 0.07 0.79 8.14 -2.38 -0.02 0.77 16 50 H 0.03 0.55 6.28 -2.39 -0.01 0.53 16 51 H 0.11 0.96 8.14 -2.39 -0.02 0.94 16 52 H 0.04 0.92 6.52 -2.38 -0.02 0.91 16 53 H 0.07 1.31 5.99 -2.39 -0.01 1.30 16 54 H 0.11 1.20 8.06 -2.39 -0.02 1.18 16 55 H 0.06 1.34 7.30 -2.39 -0.02 1.32 16 Total: -1.00 -79.13 409.43 0.85 -78.27 By element: Atomic # 1 Polarization: 11.47 SS G_CDS: 0.84 Total: 12.32 kcal Atomic # 6 Polarization: -25.79 SS G_CDS: 5.28 Total: -20.51 kcal Atomic # 7 Polarization: -78.85 SS G_CDS: -5.63 Total: -84.48 kcal Atomic # 8 Polarization: -30.93 SS G_CDS: -1.66 Total: -32.59 kcal Atomic # 14 Polarization: 44.96 SS G_CDS: 2.03 Total: 46.99 kcal Total: -79.13 0.85 -78.27 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597618016.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.883 kcal (2) G-P(sol) polarization free energy of solvation -79.128 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.011 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.855 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.273 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.156 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.49 seconds