Wall clock time and date at job start Tue Mar 31 2020 21:00:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86805 * 119.99676 * 2 1 4 4 H 1.48505 * 109.46836 * 269.99353 * 3 2 1 5 5 H 1.48491 * 109.47582 * 29.99474 * 3 2 1 6 6 H 1.48498 * 109.47026 * 150.00170 * 3 2 1 7 7 C 1.37878 * 120.00476 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99271 * 0.02562 * 7 2 1 9 9 C 1.50694 * 120.00413 * 180.02562 * 7 2 1 10 10 C 1.52992 * 109.47256 * 180.02562 * 9 7 2 11 11 C 1.53000 * 109.47168 * 179.97438 * 10 9 7 12 12 C 1.53002 * 109.47157 * 180.02562 * 11 10 9 13 13 C 1.50703 * 109.47127 * 180.02562 * 12 11 10 14 14 O 1.21279 * 120.00112 * 0.02562 * 13 12 11 15 15 N 1.34776 * 120.00018 * 179.97438 * 13 12 11 16 16 C 1.46499 * 120.00020 * 179.97438 * 15 13 12 17 17 C 1.53117 * 109.52643 * 274.87658 * 16 15 13 18 18 C 1.53040 * 109.27487 * 182.50285 * 17 16 15 19 19 N 1.46840 * 109.57621 * 59.08879 * 18 17 16 20 20 C 1.46899 * 111.00258 * 174.19366 * 19 18 17 21 21 C 1.53001 * 109.47100 * 199.96750 * 20 19 18 22 22 H 1.08993 * 110.33444 * 304.59358 * 21 20 19 23 23 C 1.54485 * 110.36956 * 182.34451 * 21 20 19 24 24 C 1.54519 * 104.06009 * 217.18972 * 23 21 20 25 25 C 1.54477 * 104.06338 * 359.97438 * 24 23 21 26 26 O 1.44426 * 110.37070 * 66.96435 * 21 20 19 27 27 C 1.46852 * 111.19557 * 298.28501 * 19 18 17 28 28 C 1.53043 * 109.52196 * 61.74426 * 27 19 18 29 29 H 0.96996 * 119.99677 * 0.02562 * 1 2 3 30 30 H 1.09001 * 109.47318 * 59.99717 * 9 7 2 31 31 H 1.09001 * 109.47379 * 300.00479 * 9 7 2 32 32 H 1.08996 * 109.47306 * 299.99974 * 10 9 7 33 33 H 1.08997 * 109.47396 * 60.00060 * 10 9 7 34 34 H 1.08999 * 109.47687 * 299.99844 * 11 10 9 35 35 H 1.09004 * 109.47472 * 60.00393 * 11 10 9 36 36 H 1.09004 * 109.47198 * 299.99719 * 12 11 10 37 37 H 1.08997 * 109.47461 * 60.00102 * 12 11 10 38 38 H 0.96999 * 120.00073 * 0.02562 * 15 13 12 39 39 H 1.09005 * 109.52293 * 35.00858 * 16 15 13 40 40 H 1.09000 * 109.50430 * 302.38639 * 17 16 15 41 41 H 1.09001 * 109.49917 * 62.50267 * 17 16 15 42 42 H 1.09000 * 109.41220 * 299.06764 * 18 17 16 43 43 H 1.08999 * 109.45378 * 179.12905 * 18 17 16 44 44 H 1.09009 * 109.46981 * 319.96589 * 20 19 18 45 45 H 1.08994 * 109.47646 * 79.96439 * 20 19 18 46 46 H 1.08997 * 110.51295 * 335.82724 * 23 21 20 47 47 H 1.08994 * 110.51293 * 98.41052 * 23 21 20 48 48 H 1.08996 * 110.50761 * 118.64582 * 24 23 21 49 49 H 1.08995 * 110.50857 * 241.21698 * 24 23 21 50 50 H 1.08998 * 110.37394 * 142.80634 * 25 24 23 51 51 H 1.08993 * 110.37514 * 265.03587 * 25 24 23 52 52 H 1.08992 * 109.46278 * 301.72588 * 27 19 18 53 53 H 1.08999 * 109.45957 * 181.75586 * 27 19 18 54 54 H 1.08994 * 109.50089 * 180.87687 * 28 27 19 55 55 H 1.09005 * 109.53203 * 60.77797 * 28 27 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6528 0.6999 6 1 3.5467 1.4403 0.7000 7 6 2.0047 -1.1940 0.0005 8 1 1.4646 -2.1293 0.0005 9 6 3.5116 -1.1940 0.0011 10 6 4.0216 -2.6364 0.0010 11 6 5.5516 -2.6364 0.0009 12 6 6.0617 -4.0789 0.0002 13 6 7.5687 -4.0788 0.0008 14 8 8.1751 -3.0285 0.0022 15 7 8.2426 -5.2460 0.0008 16 6 9.7076 -5.2459 0.0008 17 6 10.2194 -5.1232 -1.4371 18 6 11.7485 -5.1866 -1.4363 19 7 12.1879 -6.4577 -0.8469 20 6 13.6447 -6.6124 -0.9550 21 6 14.0130 -8.0901 -0.8076 22 1 13.6157 -8.4882 0.1260 23 6 15.5465 -8.2699 -0.8595 24 6 15.7434 -9.5924 -1.6340 25 6 14.3057 -10.0554 -1.9578 26 8 13.5144 -8.8470 -1.9321 27 6 11.7485 -6.5755 0.5494 28 6 10.2193 -6.5552 0.6077 29 1 -0.4849 0.8400 -0.0004 30 1 3.8746 -0.6799 0.8911 31 1 3.8753 -0.6803 -0.8888 32 1 3.6580 -3.1504 0.8907 33 1 3.6587 -3.1501 -0.8892 34 1 5.9150 -2.1225 -0.8890 35 1 5.9151 -2.1226 0.8910 36 1 5.6984 -4.5932 0.8900 37 1 5.6984 -4.5923 -0.8900 38 1 7.7577 -6.0860 0.0000 39 1 10.0719 -4.4044 0.5902 40 1 9.8224 -5.9429 -2.0359 41 1 9.8939 -4.1725 -1.8593 42 1 12.1451 -4.3579 -0.8497 43 1 12.1154 -5.1150 -2.4602 44 1 13.9774 -6.2503 -1.9279 45 1 14.1308 -6.0366 -0.1675 46 1 16.0103 -7.4413 -1.3946 47 1 15.9559 -8.3500 0.1475 48 1 16.3046 -9.4174 -2.5518 49 1 16.2521 -10.3278 -1.0107 50 1 14.2678 -10.5121 -2.9467 51 1 13.9541 -10.7581 -1.2024 52 1 12.1451 -5.7404 1.1267 53 1 12.1154 -7.5127 0.9677 54 1 9.8938 -6.6270 1.6455 55 1 9.8218 -7.3982 0.0424 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000806861458.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:00:47 Heat of formation + Delta-G solvation = -132.935929 kcal Electronic energy + Delta-G solvation = -28914.496243 eV Core-core repulsion = 24948.914023 eV Total energy + Delta-G solvation = -3965.582220 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.29 seconds Orbital eigenvalues (eV) -41.17306 -40.43923 -39.34091 -36.76586 -36.10760 -34.60074 -33.37838 -32.83839 -31.93771 -31.76778 -30.30247 -27.77515 -26.26901 -24.58832 -24.15582 -23.34525 -22.41778 -21.76983 -21.67678 -21.34436 -20.72114 -18.85304 -17.92208 -17.66799 -17.22761 -16.87992 -16.79064 -16.47979 -16.35156 -16.19698 -15.68251 -15.54824 -15.14883 -14.90115 -14.68567 -14.59674 -14.48099 -14.33276 -13.82061 -13.69387 -13.49028 -13.36060 -13.28728 -12.90358 -12.84603 -12.65885 -12.52366 -12.33017 -12.21589 -12.06959 -12.04180 -11.89410 -11.77604 -11.75498 -11.58141 -11.50341 -11.37756 -11.34037 -11.26128 -10.76007 -10.73430 -10.60934 -10.04144 -9.27074 -8.29721 -6.32776 1.34572 1.35944 1.48922 1.68236 2.21440 2.35896 2.77909 3.05775 3.08415 3.66663 3.69812 3.78155 3.87821 3.91765 4.01020 4.04610 4.09319 4.14034 4.16865 4.22546 4.31433 4.38178 4.43043 4.49439 4.57605 4.60937 4.65920 4.66536 4.68120 4.71292 4.78354 4.83990 4.86810 4.88023 4.90447 4.98944 4.99576 5.02843 5.12622 5.15139 5.15665 5.20596 5.20857 5.25756 5.30551 5.54752 5.61536 5.66028 5.68907 5.96620 6.07062 6.18036 6.29717 6.60532 6.75186 7.31445 7.32274 8.86921 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.038981 B = 0.001422 C = 0.001403 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 718.120140 B =19692.451762 C =19954.291845 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.950 5.950 2 C 0.006 3.994 3 Si 0.947 3.053 4 H -0.267 1.267 5 H -0.281 1.281 6 H -0.253 1.253 7 C -0.532 4.532 8 H 0.037 0.963 9 C -0.017 4.017 10 C -0.094 4.094 11 C -0.097 4.097 12 C -0.132 4.132 13 C 0.513 3.487 14 O -0.587 6.587 15 N -0.715 5.715 16 C 0.145 3.855 17 C -0.120 4.120 18 C 0.065 3.935 19 N -0.540 5.540 20 C 0.060 3.940 21 C 0.080 3.920 22 H 0.070 0.930 23 C -0.150 4.150 24 C -0.152 4.152 25 C 0.034 3.966 26 O -0.384 6.384 27 C 0.058 3.942 28 C -0.113 4.113 29 H 0.266 0.734 30 H 0.014 0.986 31 H 0.012 0.988 32 H 0.057 0.943 33 H 0.056 0.944 34 H 0.050 0.950 35 H 0.050 0.950 36 H 0.116 0.884 37 H 0.115 0.885 38 H 0.416 0.584 39 H 0.060 0.940 40 H 0.074 0.926 41 H 0.050 0.950 42 H 0.031 0.969 43 H 0.079 0.921 44 H 0.076 0.924 45 H 0.062 0.938 46 H 0.077 0.923 47 H 0.090 0.910 48 H 0.075 0.925 49 H 0.089 0.911 50 H 0.092 0.908 51 H 0.063 0.937 52 H 0.035 0.965 53 H 0.092 0.908 54 H 0.085 0.915 55 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 37.445 -23.992 -0.217 44.472 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.591 5.591 2 C -0.191 4.191 3 Si 0.770 3.230 4 H -0.192 1.192 5 H -0.206 1.206 6 H -0.177 1.177 7 C -0.570 4.570 8 H 0.056 0.944 9 C -0.054 4.054 10 C -0.132 4.132 11 C -0.135 4.135 12 C -0.171 4.171 13 C 0.301 3.699 14 O -0.467 6.467 15 N -0.367 5.367 16 C 0.040 3.960 17 C -0.159 4.159 18 C -0.063 4.063 19 N -0.264 5.264 20 C -0.067 4.067 21 C 0.022 3.978 22 H 0.088 0.912 23 C -0.188 4.188 24 C -0.190 4.190 25 C -0.043 4.043 26 O -0.304 6.304 27 C -0.070 4.070 28 C -0.151 4.151 29 H 0.075 0.925 30 H 0.032 0.968 31 H 0.030 0.970 32 H 0.076 0.924 33 H 0.075 0.925 34 H 0.069 0.931 35 H 0.069 0.931 36 H 0.134 0.866 37 H 0.133 0.867 38 H 0.254 0.746 39 H 0.079 0.921 40 H 0.093 0.907 41 H 0.069 0.931 42 H 0.049 0.951 43 H 0.097 0.903 44 H 0.095 0.905 45 H 0.080 0.920 46 H 0.095 0.905 47 H 0.109 0.891 48 H 0.094 0.906 49 H 0.108 0.892 50 H 0.111 0.889 51 H 0.081 0.919 52 H 0.053 0.947 53 H 0.110 0.890 54 H 0.104 0.896 55 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 37.333 -23.462 -0.618 44.098 hybrid contribution -0.032 1.267 0.390 1.326 sum 37.301 -22.195 -0.228 43.406 Atomic orbital electron populations 1.70060 1.08117 1.28077 1.52879 1.25972 0.95584 1.03321 0.94227 0.85705 0.79383 0.78689 0.79174 1.19247 1.20622 1.17686 1.21555 0.92126 0.93258 1.50031 0.94446 1.19574 0.93902 0.95913 0.96052 1.21341 0.93762 0.96714 1.01347 1.21272 0.94759 0.95815 1.01657 1.21686 0.89907 0.99034 1.06510 1.21154 0.91087 0.83384 0.74251 1.90678 1.71466 1.33196 1.51330 1.45998 1.06971 1.08784 1.74974 1.20969 0.79699 0.99033 0.96308 1.21875 0.95398 1.01639 0.96979 1.21961 0.94724 0.89653 0.99962 1.61868 1.12729 1.33765 1.18077 1.22202 0.87359 0.94867 1.02305 1.23058 0.92991 0.91718 0.89990 0.91201 1.22989 0.95129 0.98522 1.02204 1.22923 0.97317 0.97399 1.01321 1.23549 0.90097 0.88002 1.02614 1.89242 1.59219 1.32327 1.49581 1.22124 0.94911 1.01756 0.88253 1.21788 0.95382 0.96021 1.01891 0.92507 0.96812 0.96974 0.92411 0.92477 0.93112 0.93080 0.86582 0.86728 0.74649 0.92133 0.90683 0.93133 0.95124 0.90284 0.90502 0.91971 0.90457 0.89120 0.90598 0.89217 0.88945 0.91887 0.94665 0.89016 0.89601 0.89763 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.96 13.96 21.45 0.30 -60.66 16 2 C 0.01 0.34 5.47 84.65 0.46 0.80 16 3 Si 0.95 46.41 27.47 68.60 1.88 48.30 16 4 H -0.27 -12.62 7.11 99.48 0.71 -11.91 16 5 H -0.28 -13.31 7.11 99.48 0.71 -12.61 16 6 H -0.25 -11.84 6.54 99.48 0.65 -11.18 16 7 C -0.53 -31.70 9.66 25.60 0.25 -31.46 16 8 H 0.04 2.40 7.99 -2.91 -0.02 2.38 16 9 C -0.02 -0.84 4.04 29.84 0.12 -0.72 16 10 C -0.09 -3.68 5.15 30.59 0.16 -3.52 16 11 C -0.10 -3.21 4.50 30.60 0.14 -3.08 16 12 C -0.13 -3.09 5.70 29.85 0.17 -2.92 16 13 C 0.51 13.18 7.80 87.66 0.68 13.87 16 14 O -0.59 -20.68 15.65 -3.02 -0.05 -20.73 16 15 N -0.72 -12.81 5.08 -442.16 -2.25 -15.05 16 16 C 0.14 2.59 2.52 45.07 0.11 2.71 16 17 C -0.12 -2.25 5.68 30.65 0.17 -2.08 16 18 C 0.07 1.07 5.42 86.33 0.47 1.54 16 19 N -0.54 -7.78 4.57 -896.36 -4.10 -11.88 16 20 C 0.06 0.71 4.61 86.30 0.40 1.10 16 21 C 0.08 0.88 3.35 31.10 0.10 0.99 16 22 H 0.07 0.71 6.77 -2.39 -0.02 0.69 16 23 C -0.15 -1.03 6.63 31.62 0.21 -0.82 16 24 C -0.15 -0.98 7.09 31.61 0.22 -0.75 16 25 C 0.03 0.34 7.63 72.48 0.55 0.89 16 26 O -0.38 -6.23 11.33 -148.98 -1.69 -7.91 16 27 C 0.06 0.69 5.29 86.33 0.46 1.14 16 28 C -0.11 -1.36 5.57 30.65 0.17 -1.19 16 29 H 0.27 15.89 8.31 -92.71 -0.77 15.12 16 30 H 0.01 0.67 7.20 -2.39 -0.02 0.66 16 31 H 0.01 0.59 7.57 -2.39 -0.02 0.57 16 32 H 0.06 2.19 8.14 -2.39 -0.02 2.17 16 33 H 0.06 2.17 8.14 -2.39 -0.02 2.15 16 34 H 0.05 1.80 8.10 -2.39 -0.02 1.78 16 35 H 0.05 1.81 8.10 -2.39 -0.02 1.79 16 36 H 0.12 2.19 8.14 -2.38 -0.02 2.17 16 37 H 0.11 2.21 8.14 -2.39 -0.02 2.19 16 38 H 0.42 4.77 8.60 -92.71 -0.80 3.97 16 39 H 0.06 1.40 7.58 -2.38 -0.02 1.38 16 40 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 41 H 0.05 1.19 8.14 -2.39 -0.02 1.17 16 42 H 0.03 0.52 8.14 -2.39 -0.02 0.50 16 43 H 0.08 1.26 7.93 -2.39 -0.02 1.24 16 44 H 0.08 0.98 7.79 -2.38 -0.02 0.96 16 45 H 0.06 0.57 8.00 -2.39 -0.02 0.55 16 46 H 0.08 0.52 7.87 -2.39 -0.02 0.50 16 47 H 0.09 0.37 8.14 -2.39 -0.02 0.35 16 48 H 0.08 0.47 8.14 -2.39 -0.02 0.45 16 49 H 0.09 0.32 8.14 -2.39 -0.02 0.30 16 50 H 0.09 0.80 8.14 -2.39 -0.02 0.78 16 51 H 0.06 0.52 8.14 -2.39 -0.02 0.50 16 52 H 0.04 0.43 8.14 -2.39 -0.02 0.41 16 53 H 0.09 0.86 6.68 -2.39 -0.02 0.85 16 54 H 0.09 0.86 8.14 -2.39 -0.02 0.84 16 55 H 0.08 0.97 8.14 -2.38 -0.02 0.95 16 Total: -1.00 -77.31 425.55 -1.06 -78.37 By element: Atomic # 1 Polarization: 13.08 SS G_CDS: -0.02 Total: 13.07 kcal Atomic # 6 Polarization: -28.36 SS G_CDS: 4.85 Total: -23.51 kcal Atomic # 7 Polarization: -81.54 SS G_CDS: -6.05 Total: -87.59 kcal Atomic # 8 Polarization: -26.91 SS G_CDS: -1.74 Total: -28.64 kcal Atomic # 14 Polarization: 46.41 SS G_CDS: 1.88 Total: 48.30 kcal Total: -77.31 -1.06 -78.37 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000806861458.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.566 kcal (2) G-P(sol) polarization free energy of solvation -77.305 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.871 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.065 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.370 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.936 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.29 seconds