Wall clock time and date at job start Tue Mar 31 2020 20:57:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86801 * 120.00124 * 2 1 4 4 H 1.48500 * 109.47190 * 240.00297 * 3 2 1 5 5 H 1.48505 * 109.46794 * 0.02562 * 3 2 1 6 6 H 1.48497 * 109.46802 * 119.99923 * 3 2 1 7 7 C 1.37872 * 119.99893 * 180.02562 * 2 1 3 8 8 H 1.08006 * 120.00288 * 179.97438 * 7 2 1 9 9 C 1.50701 * 120.00394 * 359.97438 * 7 2 1 10 10 C 1.52992 * 109.47771 * 179.97438 * 9 7 2 11 11 C 1.52995 * 109.47559 * 180.02562 * 10 9 7 12 12 C 1.53001 * 109.47332 * 180.02562 * 11 10 9 13 13 H 1.08996 * 109.47352 * 54.99600 * 12 11 10 14 14 N 1.46905 * 109.46947 * 294.99830 * 12 11 10 15 15 C 1.50697 * 109.47213 * 174.99878 * 12 11 10 16 16 O 1.21286 * 119.99959 * 100.00048 * 15 12 11 17 17 N 1.34775 * 119.99977 * 279.99847 * 15 12 11 18 18 C 1.47605 * 118.64448 * 359.97438 * 17 15 12 19 19 C 1.53949 * 112.14200 * 137.87061 * 18 17 15 20 20 C 1.50887 * 110.09326 * 319.43440 * 19 18 17 21 21 C 1.52566 * 109.35066 * 91.88834 * 20 19 18 22 22 H 1.09002 * 108.51488 * 36.23832 * 21 20 19 23 23 O 1.42907 * 108.50910 * 153.72711 * 21 20 19 24 24 C 1.42904 * 113.99761 * 210.00376 * 23 21 20 25 25 C 1.53787 * 113.61021 * 249.13417 * 24 23 21 26 26 C 1.53955 * 87.01813 * 220.04999 * 25 24 23 27 27 C 1.53779 * 113.61388 * 151.52901 * 24 23 21 28 28 C 1.47090 * 114.32972 * 274.97957 * 21 20 19 29 29 C 1.44583 * 118.64168 * 179.73698 * 17 15 12 30 30 H 0.96998 * 119.99680 * 359.97438 * 1 2 3 31 31 H 1.09001 * 109.46777 * 59.99626 * 9 7 2 32 32 H 1.09004 * 109.46825 * 300.00381 * 9 7 2 33 33 H 1.09001 * 109.47157 * 60.00004 * 10 9 7 34 34 H 1.09004 * 109.47376 * 300.00189 * 10 9 7 35 35 H 1.08997 * 109.47653 * 59.99989 * 11 10 9 36 36 H 1.09001 * 109.47049 * 299.99937 * 11 10 9 37 37 H 1.00901 * 110.99869 * 176.04901 * 14 12 11 38 38 H 1.00896 * 110.99543 * 300.00023 * 14 12 11 39 39 H 1.09000 * 108.94667 * 258.55250 * 18 17 15 40 40 H 1.08994 * 108.94541 * 17.18073 * 18 17 15 41 41 H 1.08991 * 109.36899 * 79.62650 * 19 18 17 42 42 H 1.09001 * 109.36442 * 199.37695 * 19 18 17 43 43 H 1.08996 * 109.48883 * 211.85009 * 20 19 18 44 44 H 1.09000 * 109.48971 * 331.92747 * 20 19 18 45 45 H 1.08995 * 112.84908 * 20.32867 * 24 23 21 46 46 H 1.08999 * 113.61499 * 334.56871 * 25 24 23 47 47 H 1.08999 * 113.60972 * 105.47065 * 25 24 23 48 48 H 1.08999 * 113.53503 * 270.81489 * 26 25 24 49 49 H 1.08994 * 113.74455 * 139.94472 * 26 25 24 50 50 H 1.08997 * 113.61295 * 254.52290 * 27 24 23 51 51 H 1.08997 * 113.61668 * 25.34749 * 27 24 23 52 52 H 1.09001 * 109.32963 * 183.06871 * 28 21 20 53 53 H 1.08997 * 109.32938 * 302.71844 * 28 21 20 54 54 H 1.08997 * 109.45113 * 30.75986 * 29 17 15 55 55 H 1.08995 * 109.45065 * 150.68311 * 29 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2841 2.7464 0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 6 2.2452 -3.6621 -0.0018 11 6 1.4802 -4.9871 -0.0025 12 6 2.4744 -6.1500 -0.0031 13 1 3.1586 -6.0436 0.8386 14 7 3.2374 -6.1412 -1.2584 15 6 1.7251 -7.4516 0.1201 16 8 1.5127 -8.1248 -0.8662 17 7 1.2909 -7.8677 1.3263 18 6 1.5663 -7.0253 2.5066 19 6 0.3529 -6.9329 3.4495 20 6 -0.9179 -6.7981 2.6472 21 6 -1.5016 -8.1836 2.3880 22 1 -1.3244 -8.8038 3.2668 23 8 -2.9132 -8.0546 2.2067 24 6 -3.6595 -9.2012 2.6198 25 6 -4.2980 -9.9736 1.4533 26 6 -5.5357 -10.1483 2.3520 27 6 -5.0881 -8.8719 3.0838 28 6 -0.9404 -8.8675 1.2129 29 6 0.5700 -9.1182 1.4098 30 1 -0.4849 0.8400 0.0004 31 1 0.6240 -2.5567 -0.8903 32 1 0.6247 -2.5571 0.8897 33 1 2.8725 -3.6048 0.8877 34 1 2.8712 -3.6040 -0.8923 35 1 0.8532 -5.0443 -0.8922 36 1 0.8539 -5.0455 0.8878 37 1 3.9451 -6.8605 -1.2565 38 1 2.6251 -6.2386 -2.0544 39 1 2.4087 -7.4479 3.0543 40 1 1.8314 -6.0225 2.1716 41 1 0.3006 -7.8339 4.0606 42 1 0.4635 -6.0629 4.0968 43 1 -1.6378 -6.1986 3.2044 44 1 -0.6980 -6.3124 1.6965 45 1 -3.1099 -9.8359 3.3149 46 1 -4.4818 -9.3595 0.5717 47 1 -3.7909 -10.9098 1.2201 48 1 -5.4996 -11.0431 2.9733 49 1 -6.4818 -10.0388 1.8221 50 1 -5.2180 -8.9202 4.1649 51 1 -5.4878 -7.9554 2.6499 52 1 -1.4502 -9.8206 1.0725 53 1 -1.0874 -8.2462 0.3295 54 1 0.9256 -9.7948 0.6328 55 1 0.7377 -9.5691 2.3878 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000872286545.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:57:30 Heat of formation + Delta-G solvation = -100.993768 kcal Electronic energy + Delta-G solvation = -31034.300069 eV Core-core repulsion = 27070.102965 eV Total energy + Delta-G solvation = -3964.197104 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 2.77 seconds Orbital eigenvalues (eV) -41.80688 -40.45975 -38.76251 -37.25628 -36.78184 -35.28127 -33.91712 -33.28114 -33.05323 -29.68890 -28.13842 -27.03258 -26.53328 -25.97896 -25.31186 -24.02484 -22.52236 -21.87195 -21.59696 -20.47695 -19.77613 -18.69592 -18.43309 -18.13394 -17.33238 -16.99670 -16.65016 -16.52606 -16.45881 -16.08819 -15.64785 -15.51250 -15.30856 -14.74684 -14.68689 -14.46332 -14.27462 -13.99189 -13.73533 -13.60184 -13.45151 -13.36056 -13.11692 -12.98463 -12.84850 -12.67730 -12.50947 -12.42776 -12.38767 -12.23061 -12.19375 -11.95603 -11.89077 -11.51898 -11.46664 -11.37077 -11.32984 -11.24794 -11.20802 -10.93921 -10.50925 -10.39114 -9.71013 -9.65446 -8.15883 -6.26711 1.41515 1.44980 1.45241 1.52914 2.01479 2.44108 2.70660 3.17020 3.36516 3.55413 3.60945 3.65540 3.73745 3.86322 3.93012 3.93821 3.97574 4.00668 4.08508 4.11239 4.17698 4.24824 4.39045 4.43713 4.48881 4.53321 4.58482 4.65237 4.74860 4.79301 4.81912 4.83360 4.94413 4.96036 5.00174 5.00747 5.04357 5.11593 5.14722 5.22747 5.23181 5.26051 5.33033 5.34150 5.41671 5.60661 5.64435 5.83762 5.93808 6.01089 6.26228 6.30640 6.42900 6.46299 6.90941 7.06891 7.42372 8.95765 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.010727 B = 0.002729 C = 0.002349 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2609.705196 B =10259.527375 C =11917.830225 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.003 4.003 3 Si 0.964 3.036 4 H -0.269 1.269 5 H -0.285 1.285 6 H -0.263 1.263 7 C -0.538 4.538 8 H 0.061 0.939 9 C 0.024 3.976 10 C -0.081 4.081 11 C -0.094 4.094 12 C 0.085 3.915 13 H 0.124 0.876 14 N -0.818 5.818 15 C 0.478 3.522 16 O -0.582 6.582 17 N -0.596 5.596 18 C 0.090 3.910 19 C -0.121 4.121 20 C -0.119 4.119 21 C 0.100 3.900 22 H 0.079 0.921 23 O -0.399 6.399 24 C 0.055 3.945 25 C -0.163 4.163 26 C -0.132 4.132 27 C -0.142 4.142 28 C -0.148 4.148 29 C 0.119 3.881 30 H 0.262 0.738 31 H -0.021 1.021 32 H -0.008 1.008 33 H 0.059 0.941 34 H 0.055 0.945 35 H 0.038 0.962 36 H 0.071 0.929 37 H 0.349 0.651 38 H 0.344 0.656 39 H 0.100 0.900 40 H 0.084 0.916 41 H 0.093 0.907 42 H 0.096 0.904 43 H 0.069 0.931 44 H 0.042 0.958 45 H 0.105 0.895 46 H 0.067 0.933 47 H 0.077 0.923 48 H 0.100 0.900 49 H 0.074 0.926 50 H 0.084 0.916 51 H 0.072 0.928 52 H 0.084 0.916 53 H 0.033 0.967 54 H 0.071 0.929 55 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.378 -25.354 11.969 28.138 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.201 4.201 3 Si 0.788 3.212 4 H -0.194 1.194 5 H -0.211 1.211 6 H -0.188 1.188 7 C -0.576 4.576 8 H 0.080 0.920 9 C -0.013 4.013 10 C -0.119 4.119 11 C -0.132 4.132 12 C -0.030 4.030 13 H 0.141 0.859 14 N -0.347 5.347 15 C 0.265 3.735 16 O -0.463 6.463 17 N -0.328 5.328 18 C -0.031 4.031 19 C -0.159 4.159 20 C -0.157 4.157 21 C 0.043 3.957 22 H 0.097 0.903 23 O -0.319 6.319 24 C -0.003 4.003 25 C -0.201 4.201 26 C -0.169 4.169 27 C -0.180 4.180 28 C -0.187 4.187 29 C -0.004 4.004 30 H 0.071 0.929 31 H -0.003 1.003 32 H 0.010 0.990 33 H 0.078 0.922 34 H 0.074 0.926 35 H 0.057 0.943 36 H 0.089 0.911 37 H 0.163 0.837 38 H 0.157 0.843 39 H 0.118 0.882 40 H 0.103 0.897 41 H 0.112 0.888 42 H 0.114 0.886 43 H 0.087 0.913 44 H 0.061 0.939 45 H 0.123 0.877 46 H 0.086 0.914 47 H 0.096 0.904 48 H 0.119 0.881 49 H 0.093 0.907 50 H 0.102 0.898 51 H 0.090 0.910 52 H 0.102 0.898 53 H 0.052 0.948 54 H 0.090 0.910 55 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -2.482 -24.701 11.626 27.413 hybrid contribution -0.586 0.057 -0.732 0.939 sum -3.068 -24.644 10.894 27.119 Atomic orbital electron populations 1.70109 1.07872 1.27672 1.52015 1.26002 0.95733 1.03406 0.94911 0.85524 0.78267 0.78131 0.79274 1.19387 1.21057 1.18757 1.21689 0.93579 0.92327 1.50018 0.92041 1.19025 0.94492 0.93559 0.94248 1.21269 0.97462 0.91800 1.01378 1.21492 0.96724 0.93692 1.01271 1.21653 0.95482 0.89895 0.96019 0.85881 1.59055 1.17583 1.54884 1.03152 1.22485 0.79290 0.88670 0.83040 1.90643 1.59457 1.58219 1.37945 1.47904 1.54754 1.22374 1.07741 1.22432 0.99035 0.95584 0.86023 1.21689 0.91837 1.04968 0.97403 1.21185 0.97953 0.96035 1.00518 1.21197 0.80505 0.96757 0.97258 0.90275 1.88059 1.18576 1.39998 1.85234 1.24044 0.92060 0.87563 0.96591 1.23528 0.98146 1.00449 0.98003 1.22694 0.97718 0.98046 0.98458 1.23208 0.94631 0.98750 1.01362 1.21588 0.97107 1.01290 0.98717 1.21282 0.89659 0.85584 1.03873 0.92932 1.00259 0.98978 0.92191 0.92579 0.94332 0.91096 0.83739 0.84315 0.88216 0.89729 0.88826 0.88555 0.91250 0.93866 0.87708 0.91445 0.90449 0.88116 0.90678 0.89784 0.90970 0.89793 0.94772 0.91037 0.87207 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.40 13.29 21.45 0.28 -58.11 16 2 C 0.00 -0.19 5.46 84.65 0.46 0.27 16 3 Si 0.96 44.95 29.54 68.60 2.03 46.98 16 4 H -0.27 -12.12 7.11 99.48 0.71 -11.41 16 5 H -0.29 -13.05 7.11 99.48 0.71 -12.34 16 6 H -0.26 -11.59 7.11 99.48 0.71 -10.88 16 7 C -0.54 -31.16 9.11 25.60 0.23 -30.92 16 8 H 0.06 3.39 7.74 -2.91 -0.02 3.37 16 9 C 0.02 1.28 4.97 29.85 0.15 1.43 16 10 C -0.08 -3.34 5.04 30.59 0.15 -3.19 16 11 C -0.09 -3.20 4.44 30.59 0.14 -3.06 16 12 C 0.09 2.30 2.28 44.17 0.10 2.40 16 13 H 0.12 2.77 6.89 -2.39 -0.02 2.75 16 14 N -0.82 -22.59 8.44 -171.80 -1.45 -24.04 16 15 C 0.48 13.11 6.86 87.66 0.60 13.72 16 16 O -0.58 -19.83 15.68 -3.05 -0.05 -19.87 16 17 N -0.60 -12.36 2.25 -819.20 -1.84 -14.21 16 18 C 0.09 1.42 5.47 86.49 0.47 1.90 16 19 C -0.12 -1.72 5.71 30.23 0.17 -1.55 16 20 C -0.12 -2.56 5.16 29.76 0.15 -2.41 16 21 C 0.10 1.93 2.08 28.61 0.06 1.99 16 22 H 0.08 1.08 6.62 -2.39 -0.02 1.06 16 23 O -0.40 -9.47 9.85 -148.98 -1.47 -10.93 16 24 C 0.05 0.93 3.90 31.12 0.12 1.05 16 25 C -0.16 -2.66 7.83 31.18 0.24 -2.42 16 26 C -0.13 -1.66 8.09 31.18 0.25 -1.41 16 27 C -0.14 -2.22 7.91 31.12 0.25 -1.97 16 28 C -0.15 -3.11 5.21 29.22 0.15 -2.96 16 29 C 0.12 2.17 5.34 87.20 0.47 2.64 16 30 H 0.26 15.39 8.31 -92.71 -0.77 14.62 16 31 H -0.02 -1.26 8.14 -2.39 -0.02 -1.28 16 32 H -0.01 -0.47 8.14 -2.38 -0.02 -0.49 16 33 H 0.06 2.27 8.14 -2.39 -0.02 2.25 16 34 H 0.06 2.38 7.75 -2.38 -0.02 2.37 16 35 H 0.04 1.49 8.14 -2.39 -0.02 1.47 16 36 H 0.07 2.33 5.77 -2.39 -0.01 2.31 16 37 H 0.35 8.14 9.06 -89.69 -0.81 7.33 16 38 H 0.34 10.32 8.58 -89.70 -0.77 9.55 16 39 H 0.10 1.01 8.14 -2.39 -0.02 0.99 16 40 H 0.08 1.58 4.40 -2.39 -0.01 1.57 16 41 H 0.09 0.85 7.32 -2.39 -0.02 0.84 16 42 H 0.10 1.26 8.14 -2.39 -0.02 1.24 16 43 H 0.07 1.61 8.07 -2.39 -0.02 1.59 16 44 H 0.04 1.21 6.58 -2.39 -0.02 1.20 16 45 H 0.11 1.28 7.46 -2.39 -0.02 1.26 16 46 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 47 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16 48 H 0.10 0.88 8.14 -2.39 -0.02 0.86 16 49 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 50 H 0.08 1.05 8.14 -2.39 -0.02 1.04 16 51 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 52 H 0.08 1.55 7.74 -2.39 -0.02 1.53 16 53 H 0.03 1.01 8.14 -2.39 -0.02 0.99 16 54 H 0.07 1.53 7.30 -2.39 -0.02 1.51 16 55 H 0.11 1.22 8.06 -2.39 -0.02 1.20 16 Total: -1.00 -74.47 418.74 0.97 -73.49 By element: Atomic # 1 Polarization: 31.87 SS G_CDS: -0.71 Total: 31.17 kcal Atomic # 6 Polarization: -28.66 SS G_CDS: 4.18 Total: -24.48 kcal Atomic # 7 Polarization: -93.35 SS G_CDS: -3.01 Total: -96.35 kcal Atomic # 8 Polarization: -29.29 SS G_CDS: -1.52 Total: -30.81 kcal Atomic # 14 Polarization: 44.95 SS G_CDS: 2.03 Total: 46.98 kcal Total: -74.47 0.97 -73.49 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000872286545.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.499 kcal (2) G-P(sol) polarization free energy of solvation -74.466 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.966 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.972 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.494 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.994 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.77 seconds