Wall clock time and date at job start Tue Mar 31 2020 20:52:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86802 * 119.99731 * 2 1 4 4 H 1.48499 * 109.47005 * 240.00301 * 3 2 1 5 5 H 1.48499 * 109.47378 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.47304 * 120.00337 * 3 2 1 7 7 C 1.37881 * 120.00454 * 180.02562 * 2 1 3 8 8 H 1.07994 * 119.99850 * 179.97438 * 7 2 1 9 9 C 1.50693 * 119.99654 * 359.71942 * 7 2 1 10 10 N 1.46897 * 109.47196 * 175.09226 * 9 7 2 11 11 C 1.46898 * 111.00247 * 67.61344 * 10 9 7 12 12 C 1.53003 * 109.46827 * 76.85625 * 11 10 9 13 13 N 1.46900 * 109.47123 * 184.32164 * 12 11 10 14 14 C 1.47018 * 110.99796 * 293.63619 * 13 12 11 15 15 C 1.53099 * 109.25640 * 177.60585 * 14 13 12 16 16 O 1.43019 * 109.25910 * 56.85211 * 15 14 13 17 17 C 1.43018 * 113.73439 * 301.33192 * 16 15 14 18 18 C 1.47013 * 110.99947 * 170.00408 * 13 12 11 19 19 C 1.46905 * 110.99824 * 303.66463 * 10 9 7 20 20 C 1.53002 * 109.46780 * 282.50971 * 19 10 9 21 21 H 1.08992 * 110.01968 * 302.65554 * 20 19 10 22 22 C 1.55905 * 110.02939 * 181.26267 * 20 19 10 23 23 C 1.51594 * 102.20128 * 245.80857 * 22 20 19 24 24 H 1.08998 * 110.62595 * 84.62070 * 23 22 20 25 25 C 1.51073 * 122.76231 * 218.99638 * 23 22 20 26 26 C 1.55703 * 104.51833 * 142.66316 * 25 23 22 27 27 C 1.56247 * 105.89179 * 352.88082 * 26 25 23 28 28 C 1.50702 * 101.85988 * 335.46619 * 27 26 25 29 29 H 1.09001 * 108.85133 * 291.98054 * 28 27 26 30 30 O 1.39685 * 127.82681 * 158.71842 * 28 27 26 31 31 H 0.97001 * 120.00290 * 359.97438 * 1 2 3 32 32 H 1.09003 * 109.47391 * 295.09612 * 9 7 2 33 33 H 1.09004 * 109.47032 * 55.09265 * 9 7 2 34 34 H 1.08999 * 109.47514 * 196.85831 * 11 10 9 35 35 H 1.08999 * 109.47237 * 316.86163 * 11 10 9 36 36 H 1.08998 * 109.47460 * 304.32136 * 12 11 10 37 37 H 1.08999 * 109.47093 * 64.32095 * 12 11 10 38 38 H 1.08994 * 109.50703 * 297.54280 * 14 13 12 39 39 H 1.09000 * 109.50822 * 57.67449 * 14 13 12 40 40 H 1.08999 * 109.51087 * 296.91622 * 15 14 13 41 41 H 1.09002 * 109.54349 * 176.80041 * 15 14 13 42 42 H 1.08998 * 109.50294 * 298.72941 * 17 16 15 43 43 H 1.09007 * 109.50329 * 178.60332 * 17 16 15 44 44 H 1.08997 * 109.50728 * 302.32410 * 18 13 12 45 45 H 1.09005 * 109.50904 * 62.41421 * 18 13 12 46 46 H 1.09000 * 109.47389 * 42.51107 * 19 10 9 47 47 H 1.08996 * 109.47079 * 162.51701 * 19 10 9 48 48 H 1.09005 * 110.86212 * 3.98599 * 22 20 19 49 49 H 1.09003 * 110.85739 * 127.43335 * 22 20 19 50 50 H 1.09002 * 110.42490 * 261.42144 * 25 23 22 51 51 H 1.09001 * 110.43064 * 23.90405 * 25 23 22 52 52 H 1.08995 * 110.16856 * 233.77116 * 26 25 23 53 53 H 1.09008 * 110.16458 * 111.98792 * 26 25 23 54 54 H 1.09000 * 110.95014 * 217.31984 * 27 26 25 55 55 H 1.09001 * 110.94917 * 93.60581 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.1027 1.6965 -1.2125 5 1 1.2840 2.7465 0.0006 6 1 3.1028 1.6965 1.2124 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1939 -0.0010 9 6 1.2512 -2.4991 0.0053 10 7 2.2009 -3.6133 -0.1150 11 6 3.0369 -3.7247 1.0877 12 6 2.2278 -4.3730 2.2129 13 7 3.0285 -4.3904 3.4444 14 6 4.1924 -5.2774 3.3036 15 6 5.0292 -5.2197 4.5844 16 8 4.2088 -5.5761 5.7003 17 6 3.0661 -4.7324 5.8675 18 6 2.2095 -4.7851 4.5997 19 6 3.0287 -3.4716 -1.3203 20 6 2.2167 -3.8875 -2.5485 21 1 1.8594 -4.9104 -2.4307 22 6 3.0936 -3.7725 -3.8324 23 6 2.3991 -2.6625 -4.5964 24 1 2.7466 -1.6868 -4.2567 25 6 2.2277 -2.6861 -6.0972 26 6 0.8187 -2.0692 -6.3389 27 6 0.1806 -1.8923 -4.9237 28 6 0.9208 -2.9288 -4.1184 29 1 0.6267 -3.9197 -4.4643 30 8 1.0863 -2.9792 -2.7323 31 1 -0.4850 0.8400 0.0004 32 1 0.6959 -2.5940 0.9385 33 1 0.5566 -2.5214 -0.8345 34 1 3.9101 -4.3388 0.8677 35 1 3.3603 -2.7313 1.3986 36 1 1.3155 -3.8006 2.3808 37 1 1.9696 -5.3942 1.9329 38 1 3.8529 -6.2996 3.1364 39 1 4.7982 -4.9515 2.4581 40 1 5.4132 -4.2091 4.7230 41 1 5.8623 -5.9184 4.5074 42 1 3.3931 -3.7076 6.0435 43 1 2.4791 -5.0790 6.7181 44 1 1.3679 -4.0998 4.7004 45 1 1.8377 -5.7992 4.4529 46 1 3.3416 -2.4328 -1.4262 47 1 3.9086 -4.1090 -1.2337 48 1 4.1156 -3.4895 -3.5804 49 1 3.0788 -4.7046 -4.3972 50 1 2.9959 -2.0798 -6.5773 51 1 2.2633 -3.7104 -6.4681 52 1 0.2119 -2.7436 -6.9431 53 1 0.9117 -1.1020 -6.8329 54 1 -0.8877 -2.1074 -4.9482 55 1 0.3662 -0.8910 -4.5350 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000878159806.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:52:27 Heat of formation + Delta-G solvation = -83.747150 kcal Electronic energy + Delta-G solvation = -31464.978111 eV Core-core repulsion = 27501.528877 eV Total energy + Delta-G solvation = -3963.449235 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -41.57767 -40.54982 -38.71972 -36.90737 -36.26285 -34.48133 -33.09009 -32.17791 -30.99039 -29.65591 -28.58242 -28.25166 -26.49334 -25.49063 -24.93419 -23.77016 -22.12212 -21.64386 -21.25850 -21.18923 -20.82726 -18.47646 -17.84121 -17.45547 -17.13061 -17.02472 -16.45112 -16.28732 -16.15095 -15.97746 -15.91595 -15.66565 -15.37498 -15.25664 -14.95303 -14.54177 -14.38904 -13.93128 -13.69503 -13.32839 -13.20848 -13.18680 -13.09933 -12.89503 -12.78182 -12.61793 -12.50072 -12.38167 -12.29797 -12.14645 -12.07117 -11.95544 -11.80157 -11.56273 -11.51826 -11.41978 -11.34962 -11.21273 -10.93652 -10.65320 -10.45178 -10.20034 -9.37098 -8.94368 -8.05298 -6.19063 1.33334 1.34791 1.41726 2.40180 2.62585 2.68512 2.95561 3.20870 3.44525 3.70853 3.77148 3.87851 3.91033 3.97164 4.03775 4.12699 4.16124 4.20459 4.27698 4.31359 4.34757 4.41091 4.45117 4.48531 4.53738 4.58459 4.60529 4.66623 4.68496 4.73271 4.77527 4.82053 4.89921 4.91818 4.94728 4.98266 5.02813 5.09216 5.11497 5.15352 5.20883 5.26344 5.34551 5.39602 5.39899 5.50102 5.58805 5.94360 5.99147 6.01870 6.16502 6.18345 6.32460 6.36977 6.67225 7.00969 7.47534 8.97900 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.011556 B = 0.003266 C = 0.002771 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2422.406266 B = 8571.954007 C =10102.694686 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.924 5.924 2 C 0.016 3.984 3 Si 0.942 3.058 4 H -0.274 1.274 5 H -0.284 1.284 6 H -0.273 1.273 7 C -0.531 4.531 8 H 0.048 0.952 9 C 0.207 3.793 10 N -0.540 5.540 11 C 0.071 3.929 12 C 0.082 3.918 13 N -0.550 5.550 14 C 0.017 3.983 15 C 0.064 3.936 16 O -0.401 6.401 17 C 0.068 3.932 18 C 0.018 3.982 19 C 0.062 3.938 20 C 0.083 3.917 21 H 0.073 0.927 22 C -0.121 4.121 23 C -0.141 4.141 24 H 0.052 0.948 25 C -0.099 4.099 26 C -0.108 4.108 27 C -0.112 4.112 28 C 0.042 3.958 29 H 0.055 0.945 30 O -0.364 6.364 31 H 0.259 0.741 32 H -0.013 1.013 33 H 0.035 0.965 34 H 0.075 0.925 35 H 0.024 0.976 36 H 0.049 0.951 37 H 0.037 0.963 38 H 0.041 0.959 39 H 0.091 0.909 40 H 0.056 0.944 41 H 0.121 0.879 42 H 0.056 0.944 43 H 0.119 0.881 44 H 0.080 0.920 45 H 0.041 0.959 46 H 0.030 0.970 47 H 0.092 0.908 48 H 0.082 0.918 49 H 0.100 0.900 50 H 0.076 0.924 51 H 0.086 0.914 52 H 0.088 0.912 53 H 0.077 0.923 54 H 0.071 0.929 55 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.341 -11.490 -4.352 14.851 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.564 5.564 2 C -0.183 4.183 3 Si 0.768 3.232 4 H -0.199 1.199 5 H -0.210 1.210 6 H -0.198 1.198 7 C -0.570 4.570 8 H 0.066 0.934 9 C 0.080 3.920 10 N -0.263 5.263 11 C -0.057 4.057 12 C -0.046 4.046 13 N -0.276 5.276 14 C -0.111 4.111 15 C -0.012 4.012 16 O -0.320 6.320 17 C -0.009 4.009 18 C -0.110 4.110 19 C -0.066 4.066 20 C 0.026 3.974 21 H 0.091 0.909 22 C -0.159 4.159 23 C -0.160 4.160 24 H 0.071 0.929 25 C -0.136 4.136 26 C -0.146 4.146 27 C -0.150 4.150 28 C -0.017 4.017 29 H 0.073 0.927 30 O -0.283 6.283 31 H 0.068 0.932 32 H 0.005 0.995 33 H 0.053 0.947 34 H 0.093 0.907 35 H 0.042 0.958 36 H 0.067 0.933 37 H 0.055 0.945 38 H 0.060 0.940 39 H 0.110 0.890 40 H 0.075 0.925 41 H 0.139 0.861 42 H 0.075 0.925 43 H 0.137 0.863 44 H 0.099 0.901 45 H 0.059 0.941 46 H 0.049 0.951 47 H 0.110 0.890 48 H 0.101 0.899 49 H 0.118 0.882 50 H 0.095 0.905 51 H 0.105 0.895 52 H 0.106 0.894 53 H 0.095 0.905 54 H 0.089 0.911 55 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 8.010 -11.392 -4.015 14.494 hybrid contribution -0.074 1.560 -0.011 1.562 sum 7.935 -9.832 -4.026 13.261 Atomic orbital electron populations 1.70070 1.07326 1.27058 1.51987 1.25616 0.95397 1.02024 0.95276 0.85863 0.78618 0.80097 0.78604 1.19899 1.20955 1.19785 1.21759 0.92574 0.93114 1.49602 0.93435 1.19471 0.91557 0.85829 0.95103 1.62344 1.17626 1.44430 1.01878 1.21854 0.94923 0.98755 0.90206 1.21771 0.95602 0.98581 0.88687 1.62113 1.09561 1.52173 1.03796 1.22871 0.93191 0.94842 1.00148 1.22793 0.92905 1.01734 0.83791 1.87928 1.38330 1.56458 1.49241 1.22735 0.86622 0.95049 0.96495 1.22797 0.96889 0.99708 0.91588 1.22236 0.94743 1.00020 0.89609 1.23745 0.85896 0.92837 0.94890 0.90905 1.22352 0.99204 0.99511 0.94831 1.22775 0.96927 0.98830 0.97453 0.92925 1.21587 0.97075 1.02418 0.92561 1.22816 0.95581 1.02071 0.94108 1.21839 0.99641 0.97640 0.95837 1.22735 0.96934 0.98761 0.83271 0.92700 1.88864 1.50841 1.67326 1.21242 0.93235 0.99517 0.94691 0.90659 0.95804 0.93264 0.94458 0.94047 0.89038 0.92534 0.86085 0.92537 0.86278 0.90126 0.94058 0.95122 0.88973 0.89939 0.88184 0.90526 0.89534 0.89373 0.90465 0.91078 0.93509 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -57.43 13.29 21.45 0.28 -57.15 16 2 C 0.02 0.91 5.46 84.66 0.46 1.37 16 3 Si 0.94 46.02 29.54 68.60 2.03 48.05 16 4 H -0.27 -13.00 7.11 99.48 0.71 -12.29 16 5 H -0.28 -13.61 7.11 99.48 0.71 -12.91 16 6 H -0.27 -12.94 7.11 99.48 0.71 -12.24 16 7 C -0.53 -30.37 7.09 25.60 0.18 -30.19 16 8 H 0.05 2.69 6.17 -2.91 -0.02 2.67 16 9 C 0.21 11.22 4.72 85.56 0.40 11.63 16 10 N -0.54 -23.30 4.55 -900.79 -4.10 -27.40 16 11 C 0.07 2.74 4.68 86.30 0.40 3.14 16 12 C 0.08 2.94 5.13 86.30 0.44 3.38 16 13 N -0.55 -17.05 4.73 -895.21 -4.23 -21.28 16 14 C 0.02 0.43 5.44 86.31 0.47 0.90 16 15 C 0.06 1.40 7.01 72.02 0.50 1.91 16 16 O -0.40 -9.94 10.83 -148.98 -1.61 -11.56 16 17 C 0.07 1.56 7.01 72.01 0.50 2.06 16 18 C 0.02 0.50 5.64 86.31 0.49 0.98 16 19 C 0.06 2.38 4.50 86.30 0.39 2.76 16 20 C 0.08 2.92 3.60 31.60 0.11 3.04 16 21 H 0.07 2.42 8.14 -2.39 -0.02 2.40 16 22 C -0.12 -3.18 6.41 31.14 0.20 -2.98 16 23 C -0.14 -4.06 3.19 -10.25 -0.03 -4.10 16 24 H 0.05 1.85 8.14 -2.39 -0.02 1.83 16 25 C -0.10 -2.05 6.62 30.90 0.20 -1.85 16 26 C -0.11 -2.31 6.94 32.66 0.23 -2.08 16 27 C -0.11 -3.46 6.75 30.98 0.21 -3.25 16 28 C 0.04 1.43 3.42 31.49 0.11 1.54 16 29 H 0.06 1.69 7.98 -2.39 -0.02 1.67 16 30 O -0.36 -15.99 8.41 -137.65 -1.16 -17.15 16 31 H 0.26 15.32 8.31 -92.71 -0.77 14.55 16 32 H -0.01 -0.79 6.69 -2.39 -0.02 -0.80 16 33 H 0.04 2.13 5.61 -2.38 -0.01 2.11 16 34 H 0.08 2.42 6.13 -2.39 -0.01 2.41 16 35 H 0.02 1.07 6.61 -2.39 -0.02 1.06 16 36 H 0.05 2.08 6.66 -2.39 -0.02 2.06 16 37 H 0.04 1.28 8.12 -2.39 -0.02 1.26 16 38 H 0.04 1.02 8.14 -2.39 -0.02 1.00 16 39 H 0.09 2.18 6.48 -2.39 -0.02 2.16 16 40 H 0.06 1.26 8.14 -2.39 -0.02 1.25 16 41 H 0.12 1.96 8.14 -2.39 -0.02 1.94 16 42 H 0.06 1.33 8.14 -2.39 -0.02 1.32 16 43 H 0.12 2.12 8.14 -2.38 -0.02 2.10 16 44 H 0.08 2.24 8.09 -2.39 -0.02 2.22 16 45 H 0.04 1.09 8.14 -2.38 -0.02 1.07 16 46 H 0.03 1.38 5.93 -2.39 -0.01 1.36 16 47 H 0.09 2.83 7.55 -2.39 -0.02 2.81 16 48 H 0.08 2.02 7.76 -2.38 -0.02 2.00 16 49 H 0.10 2.02 8.14 -2.39 -0.02 2.00 16 50 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 51 H 0.09 1.44 8.14 -2.39 -0.02 1.42 16 52 H 0.09 1.50 8.14 -2.39 -0.02 1.48 16 53 H 0.08 1.50 8.14 -2.38 -0.02 1.48 16 54 H 0.07 2.09 8.14 -2.39 -0.02 2.08 16 55 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 Total: -1.00 -70.99 406.50 -2.67 -73.67 By element: Atomic # 1 Polarization: 23.71 SS G_CDS: 0.84 Total: 24.55 kcal Atomic # 6 Polarization: -17.00 SS G_CDS: 5.28 Total: -11.72 kcal Atomic # 7 Polarization: -97.79 SS G_CDS: -8.05 Total: -105.83 kcal Atomic # 8 Polarization: -25.94 SS G_CDS: -2.77 Total: -28.71 kcal Atomic # 14 Polarization: 46.02 SS G_CDS: 2.03 Total: 48.05 kcal Total: -70.99 -2.67 -73.67 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000878159806.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.082 kcal (2) G-P(sol) polarization free energy of solvation -70.992 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.074 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.673 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.665 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.747 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds