Wall clock time and date at job start Tue Mar 31 2020 21:48:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52996 * 109.57401 * 2 1 4 4 C 1.53182 * 109.51914 * 239.84443 * 2 1 3 5 5 C 1.53180 * 109.03441 * 297.07688 * 4 2 1 6 6 C 1.53094 * 109.16331 * 303.01897 * 5 4 2 7 7 H 1.08999 * 109.48341 * 297.62841 * 6 5 4 8 8 C 1.52999 * 109.47993 * 177.60219 * 6 5 4 9 9 C 1.50701 * 109.47212 * 175.00032 * 8 6 5 10 10 O 1.21289 * 119.99729 * 0.02562 * 9 8 6 11 11 N 1.34773 * 120.00505 * 180.02562 * 9 8 6 12 12 C 1.46497 * 120.00449 * 180.02562 * 11 9 8 13 13 C 1.52999 * 109.47156 * 179.97438 * 12 11 9 14 14 H 1.08999 * 109.49925 * 304.93977 * 13 12 11 15 15 C 1.53045 * 109.49786 * 184.83625 * 13 12 11 16 16 C 1.53036 * 109.53902 * 178.68613 * 15 13 12 17 17 C 1.53192 * 109.31194 * 61.36524 * 16 15 13 18 18 N 1.46921 * 108.77688 * 305.36481 * 17 16 15 19 19 C 1.36944 * 120.63232 * 233.58453 * 18 17 16 20 20 H 1.08002 * 119.99978 * 151.84581 * 19 18 17 21 21 C 1.38809 * 119.99622 * 331.84762 * 19 18 17 22 22 N 1.31615 * 120.00425 * 343.06789 * 21 19 18 23 23 Si 1.86804 * 119.99478 * 163.07426 * 21 19 18 24 24 H 1.48498 * 109.47403 * 60.00143 * 23 21 19 25 25 H 1.48505 * 109.46882 * 179.97438 * 23 21 19 26 26 H 1.48500 * 109.47106 * 299.99641 * 23 21 19 27 27 C 1.46923 * 118.73948 * 53.61064 * 18 17 16 28 28 O 1.42906 * 109.41363 * 57.61308 * 6 5 4 29 29 C 1.42903 * 114.09558 * 298.84094 * 28 6 5 30 30 H 1.09002 * 109.47033 * 299.84212 * 1 2 3 31 31 H 1.09003 * 109.46859 * 59.83901 * 1 2 3 32 32 H 1.08999 * 109.47771 * 179.83823 * 1 2 3 33 33 H 1.09000 * 109.46786 * 180.15581 * 3 2 1 34 34 H 1.08996 * 109.47376 * 300.15506 * 3 2 1 35 35 H 1.08997 * 109.47385 * 60.16179 * 3 2 1 36 36 H 1.08996 * 109.54478 * 56.94461 * 4 2 1 37 37 H 1.08998 * 109.54038 * 177.12320 * 4 2 1 38 38 H 1.08999 * 109.52375 * 62.92667 * 5 4 2 39 39 H 1.09003 * 109.52022 * 183.12024 * 5 4 2 40 40 H 1.08993 * 109.47540 * 295.00261 * 8 6 5 41 41 H 1.09004 * 109.46819 * 55.00787 * 8 6 5 42 42 H 0.97005 * 119.99785 * 359.97438 * 11 9 8 43 43 H 1.08993 * 109.46959 * 300.00063 * 12 11 9 44 44 H 1.09004 * 109.46763 * 60.00199 * 12 11 9 45 45 H 1.09000 * 109.45834 * 298.70684 * 15 13 12 46 46 H 1.08996 * 109.45630 * 58.66508 * 15 13 12 47 47 H 1.09004 * 109.49930 * 301.41909 * 16 15 13 48 48 H 1.08994 * 109.52706 * 181.33553 * 16 15 13 49 49 H 1.09007 * 109.58850 * 185.57736 * 17 16 15 50 50 H 1.08997 * 109.58562 * 65.15451 * 17 16 15 51 51 H 0.97002 * 120.00139 * 180.02562 * 22 21 19 52 52 H 1.08997 * 109.59023 * 186.60191 * 27 18 17 53 53 H 1.09005 * 109.59065 * 66.17425 * 27 18 17 54 54 H 1.09003 * 109.48107 * 301.17229 * 29 28 6 55 55 H 1.09000 * 109.47984 * 181.14260 * 29 28 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0426 1.4415 0.0000 4 6 2.0418 -0.7253 -1.2484 5 6 1.5875 -2.1873 -1.1983 6 6 2.0969 -2.8278 0.0956 7 1 3.1869 -2.8197 0.1006 8 6 1.5969 -4.2712 0.1817 9 6 2.1975 -4.9396 1.3915 10 8 2.9509 -4.3221 2.1140 11 7 1.8974 -6.2235 1.6706 12 6 2.4809 -6.8731 2.8469 13 6 1.9809 -8.3166 2.9330 14 1 0.8910 -8.3249 2.9290 15 6 2.4928 -8.9583 4.2246 16 6 1.9663 -10.3916 4.3276 17 6 2.4878 -11.2093 3.1417 18 7 2.1237 -10.5208 1.8959 19 6 1.4447 -11.1808 0.9067 20 1 0.7983 -10.6327 0.2372 21 6 1.5870 -12.5542 0.7646 22 7 2.5985 -13.1736 1.3353 23 14 0.3431 -13.5235 -0.2367 24 1 0.3296 -13.0179 -1.6329 25 1 0.7179 -14.9604 -0.2348 26 1 -1.0067 -13.3627 0.3611 27 6 2.5026 -9.1108 1.7313 28 8 1.6097 -2.0868 1.2162 29 6 2.0415 -0.7250 1.2476 30 1 -0.3633 0.5114 0.8914 31 1 -0.3633 0.5164 -0.8886 32 1 -0.3634 -1.0276 -0.0029 33 1 3.1326 1.4395 -0.0028 34 1 1.6780 1.9569 -0.8885 35 1 1.6826 1.9552 0.8914 36 1 1.6356 -0.2476 -2.1399 37 1 3.1306 -0.6811 -1.2750 38 1 0.4987 -2.2314 -1.2224 39 1 1.9940 -2.7246 -2.0551 40 1 0.5102 -4.2748 0.2666 41 1 1.8930 -4.8125 -0.7169 42 1 1.2945 -6.7173 1.0930 43 1 3.5675 -6.8690 2.7627 44 1 2.1840 -6.3320 3.7454 45 1 3.5827 -8.9715 4.2164 46 1 2.1433 -8.3807 5.0803 47 1 0.8765 -10.3809 4.3108 48 1 2.3115 -10.8405 5.2589 49 1 2.0372 -12.2018 3.1558 50 1 3.5722 -11.2972 3.2072 51 1 2.6982 -14.1333 1.2357 52 1 2.0618 -8.7186 0.8149 53 1 3.5883 -9.0275 1.6818 54 1 3.1308 -0.6894 1.2677 55 1 1.6453 -0.2384 2.1388 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000878948657.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:48:52 Heat of formation + Delta-G solvation = -113.137245 kcal Electronic energy + Delta-G solvation = -30322.785804 eV Core-core repulsion = 26358.062119 eV Total energy + Delta-G solvation = -3964.723685 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.35 seconds Orbital eigenvalues (eV) -41.24111 -40.35585 -39.26957 -36.40330 -36.04295 -34.64213 -34.11974 -32.29676 -32.04412 -30.48120 -28.16511 -27.34993 -27.15357 -26.52306 -24.96265 -23.80969 -22.78998 -22.29289 -21.35402 -20.52331 -19.79913 -18.67649 -17.82817 -17.44961 -17.11441 -16.79104 -16.49025 -16.30629 -15.93578 -15.73090 -15.49282 -15.21208 -15.07135 -15.01382 -14.54253 -14.46277 -14.05680 -13.94737 -13.74766 -13.61345 -13.51602 -13.03505 -13.00901 -12.88257 -12.84547 -12.79129 -12.74069 -12.48242 -12.41392 -12.29017 -11.97059 -11.92855 -11.81381 -11.75128 -11.57501 -11.34672 -11.32399 -11.10374 -11.09234 -10.73521 -10.51183 -10.19168 -9.98775 -8.66284 -7.85173 -5.31265 1.48367 1.51033 1.57409 1.76637 2.29987 2.52545 2.88691 3.29526 3.61259 3.68912 3.76716 3.81105 3.85344 4.00616 4.02761 4.06581 4.07602 4.19275 4.30022 4.40763 4.42756 4.56910 4.59515 4.62161 4.65101 4.68343 4.74247 4.78329 4.81676 4.84131 4.88912 4.90992 4.93205 4.97278 5.02156 5.04417 5.08045 5.10892 5.15124 5.24794 5.25173 5.32516 5.33986 5.40849 5.41242 5.53874 5.55668 5.59218 5.68018 5.78703 6.38742 6.40499 6.64886 7.16273 7.35541 7.87723 8.40281 9.21012 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.018971 B = 0.002069 C = 0.001923 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1475.606086 B =13530.590571 C =14559.930366 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.100 4.100 3 C -0.138 4.138 4 C -0.111 4.111 5 C -0.146 4.146 6 C 0.105 3.895 7 H 0.044 0.956 8 C -0.131 4.131 9 C 0.509 3.491 10 O -0.579 6.579 11 N -0.723 5.723 12 C 0.140 3.860 13 C -0.099 4.099 14 H 0.076 0.924 15 C -0.098 4.098 16 C -0.130 4.130 17 C 0.173 3.827 18 N -0.609 5.609 19 C -0.260 4.260 20 H 0.072 0.928 21 C -0.054 4.054 22 N -0.937 5.937 23 Si 0.967 3.033 24 H -0.273 1.273 25 H -0.298 1.298 26 H -0.278 1.278 27 C 0.153 3.847 28 O -0.388 6.388 29 C 0.070 3.930 30 H 0.052 0.948 31 H 0.063 0.937 32 H 0.054 0.946 33 H 0.055 0.945 34 H 0.067 0.933 35 H 0.059 0.941 36 H 0.081 0.919 37 H 0.060 0.940 38 H 0.081 0.919 39 H 0.089 0.911 40 H 0.118 0.882 41 H 0.134 0.866 42 H 0.411 0.589 43 H 0.052 0.948 44 H 0.064 0.936 45 H 0.053 0.947 46 H 0.077 0.923 47 H 0.053 0.947 48 H 0.068 0.932 49 H 0.051 0.949 50 H -0.008 1.008 51 H 0.249 0.751 52 H 0.060 0.940 53 H 0.004 0.996 54 H 0.039 0.961 55 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.384 26.494 -3.626 27.098 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.100 4.100 3 C -0.195 4.195 4 C -0.148 4.148 5 C -0.184 4.184 6 C 0.046 3.954 7 H 0.062 0.938 8 C -0.171 4.171 9 C 0.297 3.703 10 O -0.459 6.459 11 N -0.375 5.375 12 C 0.015 3.985 13 C -0.119 4.119 14 H 0.095 0.905 15 C -0.136 4.136 16 C -0.169 4.169 17 C 0.047 3.953 18 N -0.332 5.332 19 C -0.390 4.390 20 H 0.090 0.910 21 C -0.249 4.249 22 N -0.583 5.583 23 Si 0.796 3.204 24 H -0.199 1.199 25 H -0.225 1.225 26 H -0.204 1.204 27 C 0.028 3.972 28 O -0.307 6.307 29 C -0.007 4.007 30 H 0.071 0.929 31 H 0.082 0.918 32 H 0.073 0.927 33 H 0.074 0.926 34 H 0.086 0.914 35 H 0.078 0.922 36 H 0.100 0.900 37 H 0.079 0.921 38 H 0.100 0.900 39 H 0.108 0.892 40 H 0.136 0.864 41 H 0.152 0.848 42 H 0.248 0.752 43 H 0.071 0.929 44 H 0.083 0.917 45 H 0.072 0.928 46 H 0.096 0.904 47 H 0.072 0.928 48 H 0.087 0.913 49 H 0.070 0.930 50 H 0.010 0.990 51 H 0.058 0.942 52 H 0.078 0.922 53 H 0.022 0.978 54 H 0.057 0.943 55 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -3.923 26.672 -2.994 27.125 hybrid contribution -0.135 -1.244 -0.664 1.417 sum -4.058 25.428 -3.657 26.008 Atomic orbital electron populations 1.21783 0.93536 1.01942 1.01823 1.21202 0.97034 0.96288 0.95480 1.21772 1.00960 0.94122 1.02629 1.21669 1.00636 0.94797 0.97714 1.22245 1.02649 0.96522 0.96983 1.21814 0.97014 0.89929 0.86597 0.93807 1.21834 1.03789 0.94469 0.96974 1.21139 0.80695 0.81293 0.87200 1.90678 1.38216 1.64762 1.52213 1.46061 1.49674 1.12626 1.29142 1.21176 0.97451 0.91668 0.88215 1.21703 1.00830 0.92468 0.96922 0.90547 1.21343 1.00084 0.95503 0.96692 1.21999 1.00287 0.96272 0.98336 1.20623 0.94815 0.95455 0.84370 1.44307 1.65933 1.07885 1.15107 1.19511 1.18593 0.90956 1.09989 0.91023 1.25839 0.98826 0.99112 1.01172 1.70194 1.29924 1.08652 1.49531 0.85341 0.79085 0.77080 0.78933 1.19890 1.22464 1.20353 1.21021 0.95613 0.84353 0.96254 1.87932 1.73667 1.22830 1.46252 1.22661 0.97894 0.81785 0.98316 0.92922 0.91779 0.92735 0.92637 0.91378 0.92196 0.90017 0.92125 0.90037 0.89245 0.86408 0.84790 0.75223 0.92946 0.91732 0.92798 0.90413 0.92810 0.91335 0.93012 0.99022 0.94241 0.92165 0.97791 0.94279 0.89219 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.75 8.08 71.98 0.58 -1.17 16 2 C -0.10 -1.37 0.78 -52.09 -0.04 -1.41 16 3 C -0.14 -1.48 8.49 71.98 0.61 -0.87 16 4 C -0.11 -1.39 4.81 30.72 0.15 -1.25 16 5 C -0.15 -1.95 5.05 30.69 0.16 -1.80 16 6 C 0.10 2.06 2.19 30.63 0.07 2.13 16 7 H 0.04 1.03 7.95 -2.39 -0.02 1.01 16 8 C -0.13 -2.36 5.41 29.85 0.16 -2.20 16 9 C 0.51 13.56 7.71 87.66 0.68 14.23 16 10 O -0.58 -20.42 15.42 10.67 0.16 -20.25 16 11 N -0.72 -18.12 5.33 -463.07 -2.47 -20.59 16 12 C 0.14 3.95 5.07 86.38 0.44 4.39 16 13 C -0.10 -3.10 2.38 -10.71 -0.03 -3.12 16 14 H 0.08 2.39 8.14 -2.39 -0.02 2.37 16 15 C -0.10 -3.08 5.17 30.62 0.16 -2.92 16 16 C -0.13 -4.77 6.08 30.67 0.19 -4.58 16 17 C 0.17 8.34 5.30 86.36 0.46 8.79 16 18 N -0.61 -29.86 2.99 -699.09 -2.09 -31.96 16 19 C -0.26 -13.90 9.58 84.03 0.81 -13.09 16 20 H 0.07 3.63 7.89 -2.91 -0.02 3.61 16 21 C -0.05 -2.99 4.92 84.86 0.42 -2.58 16 22 N -0.94 -55.39 11.20 21.65 0.24 -55.15 16 23 Si 0.97 44.06 29.59 68.60 2.03 46.09 16 24 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 25 H -0.30 -13.83 7.11 99.48 0.71 -13.12 16 26 H -0.28 -12.23 7.11 99.48 0.71 -11.52 16 27 C 0.15 6.03 5.60 86.36 0.48 6.51 16 28 O -0.39 -9.31 9.07 -135.25 -1.23 -10.54 16 29 C 0.07 1.34 5.54 72.01 0.40 1.74 16 30 H 0.05 0.69 8.14 -2.39 -0.02 0.67 16 31 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 32 H 0.05 0.83 6.13 -2.39 -0.01 0.81 16 33 H 0.05 0.60 8.14 -2.39 -0.02 0.58 16 34 H 0.07 0.61 8.14 -2.39 -0.02 0.59 16 35 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 36 H 0.08 0.81 8.14 -2.39 -0.02 0.79 16 37 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 38 H 0.08 1.02 6.62 -2.39 -0.02 1.00 16 39 H 0.09 0.93 8.14 -2.39 -0.02 0.91 16 40 H 0.12 1.74 8.14 -2.39 -0.02 1.73 16 41 H 0.13 1.67 8.14 -2.38 -0.02 1.65 16 42 H 0.41 8.74 7.70 -92.70 -0.71 8.03 16 43 H 0.05 1.63 8.14 -2.39 -0.02 1.61 16 44 H 0.06 1.82 8.14 -2.38 -0.02 1.80 16 45 H 0.05 1.74 8.14 -2.39 -0.02 1.72 16 46 H 0.08 2.03 8.14 -2.39 -0.02 2.01 16 47 H 0.05 1.98 8.14 -2.39 -0.02 1.96 16 48 H 0.07 2.25 8.14 -2.39 -0.02 2.23 16 49 H 0.05 2.83 6.06 -2.38 -0.01 2.82 16 50 H -0.01 -0.43 8.14 -2.39 -0.02 -0.45 16 51 H 0.25 14.31 8.31 -92.71 -0.77 13.54 16 52 H 0.06 2.21 7.13 -2.39 -0.02 2.19 16 53 H 0.00 0.17 8.14 -2.38 -0.02 0.15 16 54 H 0.04 0.79 8.14 -2.39 -0.02 0.77 16 55 H 0.09 1.63 8.14 -2.39 -0.02 1.61 16 Total: -1.00 -70.12 415.84 2.45 -67.67 By element: Atomic # 1 Polarization: 21.79 SS G_CDS: 0.12 Total: 21.91 kcal Atomic # 6 Polarization: -2.86 SS G_CDS: 5.68 Total: 2.82 kcal Atomic # 7 Polarization: -103.38 SS G_CDS: -4.32 Total: -107.70 kcal Atomic # 8 Polarization: -29.73 SS G_CDS: -1.06 Total: -30.79 kcal Atomic # 14 Polarization: 44.06 SS G_CDS: 2.03 Total: 46.09 kcal Total: -70.12 2.45 -67.67 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000878948657.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.472 kcal (2) G-P(sol) polarization free energy of solvation -70.120 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.591 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.454 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.665 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.137 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.35 seconds