Wall clock time and date at job start Tue Mar 31 2020 20:56:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86803 * 119.99913 * 2 1 4 4 H 1.48508 * 109.46816 * 240.00214 * 3 2 1 5 5 H 1.48496 * 109.47171 * 0.02562 * 3 2 1 6 6 H 1.48496 * 109.46950 * 120.00683 * 3 2 1 7 7 C 1.37874 * 120.00037 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00119 * 179.97438 * 7 2 1 9 9 C 1.50700 * 120.00094 * 359.97438 * 7 2 1 10 10 C 1.53003 * 109.47358 * 179.97438 * 9 7 2 11 11 C 1.52998 * 109.47127 * 179.97438 * 10 9 7 12 12 N 1.46903 * 109.46894 * 180.02562 * 11 10 9 13 13 C 1.46843 * 110.99968 * 293.95589 * 12 11 10 14 14 C 1.53039 * 109.52478 * 185.84133 * 13 12 11 15 15 C 1.53124 * 109.27437 * 300.82206 * 14 13 12 16 16 C 1.53115 * 109.16265 * 57.65584 * 15 14 13 17 17 H 1.09000 * 109.50492 * 62.32121 * 16 15 14 18 18 C 1.50697 * 109.50265 * 182.40748 * 16 15 14 19 19 O 1.21283 * 120.00521 * 119.64412 * 18 16 15 20 20 N 1.34784 * 119.99774 * 299.91518 * 18 16 15 21 21 C 1.46499 * 119.99893 * 179.72962 * 20 18 16 22 22 H 1.09002 * 109.47048 * 324.99733 * 21 20 18 23 23 C 1.52995 * 109.47258 * 85.00288 * 21 20 18 24 24 C 1.53000 * 109.46898 * 179.97438 * 23 21 20 25 25 C 1.52993 * 109.47512 * 299.99835 * 24 23 21 26 26 C 1.52997 * 109.47283 * 59.99789 * 25 24 23 27 27 H 1.08994 * 109.47626 * 180.02562 * 26 25 24 28 28 O 1.42901 * 109.46817 * 60.00336 * 26 25 24 29 29 C 1.53000 * 109.47018 * 300.00513 * 26 25 24 30 30 C 1.46852 * 110.99654 * 58.20920 * 12 11 10 31 31 H 0.96994 * 120.00145 * 359.97438 * 1 2 3 32 32 H 1.09003 * 109.47287 * 60.00222 * 9 7 2 33 33 H 1.08997 * 109.47100 * 300.00151 * 9 7 2 34 34 H 1.09003 * 109.46680 * 59.99924 * 10 9 7 35 35 H 1.08997 * 109.47199 * 300.00165 * 10 9 7 36 36 H 1.09003 * 109.47159 * 60.00516 * 11 10 9 37 37 H 1.08997 * 109.47460 * 300.00304 * 11 10 9 38 38 H 1.08995 * 109.46654 * 65.82636 * 13 12 11 39 39 H 1.09001 * 109.46660 * 305.85763 * 13 12 11 40 40 H 1.09000 * 109.50837 * 180.88139 * 14 13 12 41 41 H 1.09000 * 109.53411 * 60.78003 * 14 13 12 42 42 H 1.09003 * 109.52272 * 297.74549 * 15 14 13 43 43 H 1.09008 * 109.51961 * 177.56065 * 15 14 13 44 44 H 0.97005 * 119.99846 * 359.72750 * 20 18 16 45 45 H 1.09003 * 109.47025 * 299.99449 * 23 21 20 46 46 H 1.09002 * 109.47544 * 59.99749 * 23 21 20 47 47 H 1.09008 * 109.46672 * 179.97438 * 24 23 21 48 48 H 1.08997 * 109.47105 * 60.00145 * 24 23 21 49 49 H 1.09009 * 109.46813 * 300.00358 * 25 24 23 50 50 H 1.08998 * 109.47387 * 180.02562 * 25 24 23 51 51 H 0.96692 * 114.00313 * 60.00323 * 28 26 25 52 52 H 1.08997 * 109.47105 * 299.99317 * 29 26 25 53 53 H 1.09009 * 109.46927 * 179.97438 * 29 26 25 54 54 H 1.08996 * 109.49495 * 54.16222 * 30 12 11 55 55 H 1.09001 * 109.42288 * 294.19374 * 30 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6964 -1.2126 5 1 1.2841 2.7465 0.0006 6 1 3.1029 1.6963 1.2124 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 6 2.2453 -3.6621 -0.0018 11 6 1.4803 -4.9871 -0.0012 12 7 2.4349 -6.1036 -0.0018 13 6 3.1990 -6.1420 -1.2552 14 6 4.0754 -7.3963 -1.2818 15 6 5.0270 -7.3736 -0.0824 16 6 4.2075 -7.2848 1.2079 17 1 3.5782 -8.1699 1.3010 18 6 5.1381 -7.2024 2.3903 19 8 5.1034 -6.2366 3.1232 20 7 6.0128 -8.1994 2.6303 21 6 6.9215 -8.1165 3.7764 22 1 7.2183 -7.0790 3.9304 23 6 6.2119 -8.6353 5.0285 24 6 7.1612 -8.5493 6.2253 25 6 8.4031 -9.4005 5.9534 26 6 9.1128 -8.8817 4.7012 27 1 9.9973 -9.4884 4.5071 28 8 9.5024 -7.5218 4.9034 29 6 8.1635 -8.9677 3.5044 30 6 3.3267 -6.0341 1.1629 31 1 -0.4850 0.8400 0.0004 32 1 0.6240 -2.5567 -0.8903 33 1 0.6247 -2.5571 0.8896 34 1 2.8726 -3.6047 0.8877 35 1 2.8712 -3.6040 -0.8922 36 1 0.8527 -5.0447 -0.8905 37 1 0.8545 -5.0450 0.8894 38 1 3.8307 -5.2563 -1.3227 39 1 2.5105 -6.1620 -2.0999 40 1 4.6541 -7.4165 -2.2052 41 1 3.4440 -8.2832 -1.2286 42 1 5.6854 -6.5080 -0.1561 43 1 5.6233 -8.2861 -0.0732 44 1 6.0405 -8.9718 2.0441 45 1 5.3269 -8.0291 5.2221 46 1 5.9151 -9.6728 4.8745 47 1 6.6554 -8.9185 7.1175 48 1 7.4583 -7.5120 6.3795 49 1 8.1059 -10.4378 5.7991 50 1 9.0792 -9.3395 6.8062 51 1 10.1058 -7.3920 5.6476 52 1 7.8664 -10.0050 3.3501 53 1 8.6690 -8.5977 2.6123 54 1 2.7312 -5.9763 2.0740 55 1 3.9571 -5.1484 1.0843 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000879973774.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:56:21 Heat of formation + Delta-G solvation = -148.862718 kcal Electronic energy + Delta-G solvation = -30339.924495 eV Core-core repulsion = 26373.651637 eV Total energy + Delta-G solvation = -3966.272857 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 10.92 seconds Orbital eigenvalues (eV) -41.53622 -40.23392 -39.26549 -36.57389 -36.34706 -34.98174 -34.44207 -32.51485 -32.05067 -31.10927 -29.98811 -28.35056 -25.87218 -25.36128 -23.62380 -23.53990 -23.16492 -22.39647 -21.44551 -20.79666 -20.15449 -18.64270 -18.25408 -17.74798 -17.37832 -16.74614 -16.53090 -16.36039 -16.20814 -15.70853 -15.53915 -15.36263 -15.33901 -14.99251 -14.92644 -14.55260 -14.41577 -14.02052 -13.84666 -13.73006 -13.50683 -13.48008 -13.28684 -13.00828 -12.70422 -12.67446 -12.53873 -12.51043 -12.46869 -12.20716 -11.99695 -11.93335 -11.75147 -11.68466 -11.52100 -11.41300 -11.39055 -11.36038 -11.21220 -10.70177 -10.63349 -10.60015 -10.03528 -9.24753 -8.24382 -6.36691 1.33569 1.37471 1.45570 1.61300 2.09822 2.36075 3.01438 3.06885 3.38217 3.58723 3.69810 3.78071 3.86982 3.92731 3.97451 4.07649 4.15407 4.19249 4.24175 4.26381 4.33915 4.35144 4.43518 4.48394 4.56828 4.58828 4.59523 4.65608 4.75280 4.80662 4.82238 4.96900 4.97576 4.99203 5.02335 5.06983 5.08684 5.09909 5.12923 5.16588 5.20664 5.24581 5.30494 5.42243 5.42964 5.44252 5.56134 5.65140 5.78454 6.02440 6.15075 6.21291 6.56533 6.78291 6.94657 7.28587 7.32056 8.86422 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.012275 B = 0.002278 C = 0.002052 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2280.514957 B =12290.184397 C =13643.986781 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C 0.001 3.999 3 Si 0.964 3.036 4 H -0.265 1.265 5 H -0.276 1.276 6 H -0.272 1.272 7 C -0.549 4.549 8 H 0.049 0.951 9 C 0.030 3.970 10 C -0.127 4.127 11 C 0.064 3.936 12 N -0.526 5.526 13 C 0.039 3.961 14 C -0.103 4.103 15 C -0.105 4.105 16 C -0.092 4.092 17 H 0.129 0.871 18 C 0.516 3.484 19 O -0.589 6.589 20 N -0.710 5.710 21 C 0.149 3.851 22 H 0.051 0.949 23 C -0.125 4.125 24 C -0.114 4.114 25 C -0.146 4.146 26 C 0.104 3.896 27 H 0.082 0.918 28 O -0.590 6.590 29 C -0.115 4.115 30 C 0.076 3.924 31 H 0.266 0.734 32 H -0.002 1.002 33 H -0.010 1.010 34 H 0.035 0.965 35 H 0.047 0.953 36 H 0.080 0.920 37 H 0.065 0.935 38 H 0.017 0.983 39 H 0.082 0.918 40 H 0.091 0.909 41 H 0.089 0.911 42 H 0.045 0.955 43 H 0.106 0.894 44 H 0.417 0.583 45 H 0.033 0.967 46 H 0.084 0.916 47 H 0.070 0.930 48 H 0.047 0.953 49 H 0.090 0.910 50 H 0.080 0.920 51 H 0.391 0.609 52 H 0.112 0.888 53 H 0.071 0.929 54 H 0.057 0.943 55 H 0.014 0.986 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.887 -30.179 6.261 36.680 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.197 4.197 3 Si 0.788 3.212 4 H -0.190 1.190 5 H -0.201 1.201 6 H -0.197 1.197 7 C -0.587 4.587 8 H 0.068 0.932 9 C -0.007 4.007 10 C -0.166 4.166 11 C -0.064 4.064 12 N -0.249 5.249 13 C -0.088 4.088 14 C -0.141 4.141 15 C -0.143 4.143 16 C -0.113 4.113 17 H 0.146 0.854 18 C 0.303 3.697 19 O -0.468 6.468 20 N -0.362 5.362 21 C 0.045 3.955 22 H 0.069 0.931 23 C -0.164 4.164 24 C -0.152 4.152 25 C -0.183 4.183 26 C 0.045 3.955 27 H 0.100 0.900 28 O -0.398 6.398 29 C -0.153 4.153 30 C -0.053 4.053 31 H 0.074 0.926 32 H 0.017 0.983 33 H 0.008 0.992 34 H 0.053 0.947 35 H 0.066 0.934 36 H 0.098 0.902 37 H 0.084 0.916 38 H 0.035 0.965 39 H 0.100 0.900 40 H 0.109 0.891 41 H 0.108 0.892 42 H 0.064 0.936 43 H 0.125 0.875 44 H 0.255 0.745 45 H 0.052 0.948 46 H 0.102 0.898 47 H 0.089 0.911 48 H 0.066 0.934 49 H 0.109 0.891 50 H 0.099 0.901 51 H 0.241 0.759 52 H 0.130 0.870 53 H 0.090 0.910 54 H 0.076 0.924 55 H 0.032 0.968 Dipole moment (debyes) X Y Z Total from point charges 19.066 -29.760 6.284 35.897 hybrid contribution 0.622 2.169 0.522 2.316 sum 19.688 -27.590 6.807 34.571 Atomic orbital electron populations 1.70073 1.07611 1.27949 1.51263 1.25970 0.95875 1.03266 0.94552 0.85526 0.78403 0.78212 0.79081 1.19020 1.20074 1.19681 1.21624 0.93113 0.92812 1.51149 0.93225 1.18900 0.94182 0.92721 0.94925 1.21999 0.98830 0.96246 0.99537 1.22136 0.94632 0.87180 1.02477 1.62293 1.17594 1.42372 1.02609 1.22312 0.96568 0.98128 0.91840 1.21563 0.97023 0.97342 0.98172 1.21600 0.97389 1.03256 0.92085 1.21287 0.96030 1.00617 0.93396 0.85350 1.20993 0.81002 0.81868 0.85809 1.90731 1.70676 1.34331 1.51083 1.45929 1.37047 1.22724 1.30513 1.20828 0.89310 1.00077 0.85330 0.93076 1.21875 0.98001 1.01582 0.94915 1.21389 0.96214 1.00339 0.97234 1.22251 0.97075 1.00565 0.98421 1.21863 0.96487 0.82941 0.94163 0.90018 1.86557 1.69439 1.27728 1.56068 1.21861 0.93665 1.01357 0.98406 1.21698 0.94170 0.95941 0.93508 0.92570 0.98339 0.99162 0.94673 0.93427 0.90152 0.91640 0.96480 0.89996 0.89070 0.89201 0.93603 0.87516 0.74545 0.94785 0.89754 0.91145 0.93376 0.89123 0.90142 0.75946 0.87021 0.91020 0.92427 0.96762 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -58.94 13.29 21.45 0.28 -58.66 16 2 C 0.00 0.09 5.46 84.65 0.46 0.55 16 3 Si 0.96 46.94 29.54 68.60 2.03 48.97 16 4 H -0.27 -12.36 7.11 99.48 0.71 -11.65 16 5 H -0.28 -12.85 7.11 99.48 0.71 -12.14 16 6 H -0.27 -12.94 7.11 99.48 0.71 -12.24 16 7 C -0.55 -33.85 9.11 25.60 0.23 -33.61 16 8 H 0.05 3.00 7.74 -2.91 -0.02 2.98 16 9 C 0.03 1.73 4.97 29.85 0.15 1.88 16 10 C -0.13 -5.88 4.46 30.59 0.14 -5.74 16 11 C 0.06 2.40 5.36 86.30 0.46 2.86 16 12 N -0.53 -16.32 4.86 -896.36 -4.35 -20.67 16 13 C 0.04 1.04 5.05 86.33 0.44 1.48 16 14 C -0.10 -1.78 6.09 30.65 0.19 -1.59 16 15 C -0.11 -1.84 5.16 30.67 0.16 -1.68 16 16 C -0.09 -2.09 2.69 -11.49 -0.03 -2.12 16 17 H 0.13 2.30 8.14 -2.39 -0.02 2.28 16 18 C 0.52 13.62 7.12 87.65 0.62 14.24 16 19 O -0.59 -22.55 15.65 -3.04 -0.05 -22.60 16 20 N -0.71 -12.27 4.98 -442.53 -2.20 -14.47 16 21 C 0.15 2.76 2.31 44.99 0.10 2.86 16 22 H 0.05 1.45 7.12 -2.39 -0.02 1.44 16 23 C -0.13 -2.16 5.49 30.59 0.17 -2.00 16 24 C -0.11 -1.61 5.78 30.59 0.18 -1.44 16 25 C -0.15 -1.13 5.64 30.59 0.17 -0.95 16 26 C 0.10 0.99 3.77 30.59 0.12 1.10 16 27 H 0.08 0.43 8.14 -2.39 -0.02 0.41 16 28 O -0.59 -8.72 11.97 -148.98 -1.78 -10.50 16 29 C -0.12 -1.23 5.13 30.60 0.16 -1.07 16 30 C 0.08 2.47 3.41 86.33 0.29 2.77 16 31 H 0.27 15.74 8.31 -92.71 -0.77 14.96 16 32 H 0.00 -0.10 8.14 -2.39 -0.02 -0.12 16 33 H -0.01 -0.61 8.14 -2.39 -0.02 -0.63 16 34 H 0.03 1.71 6.50 -2.39 -0.02 1.70 16 35 H 0.05 2.16 6.68 -2.39 -0.02 2.15 16 36 H 0.08 2.88 8.06 -2.39 -0.02 2.86 16 37 H 0.07 2.53 8.14 -2.39 -0.02 2.51 16 38 H 0.02 0.53 6.76 -2.39 -0.02 0.51 16 39 H 0.08 2.05 8.06 -2.39 -0.02 2.03 16 40 H 0.09 1.23 8.14 -2.39 -0.02 1.21 16 41 H 0.09 1.29 8.14 -2.39 -0.02 1.27 16 42 H 0.05 1.01 8.14 -2.39 -0.02 0.99 16 43 H 0.11 1.02 7.66 -2.38 -0.02 1.00 16 44 H 0.42 3.73 8.08 -92.70 -0.75 2.99 16 45 H 0.03 0.82 8.14 -2.39 -0.02 0.80 16 46 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 47 H 0.07 0.89 8.14 -2.38 -0.02 0.87 16 48 H 0.05 0.90 7.68 -2.39 -0.02 0.89 16 49 H 0.09 0.42 8.14 -2.38 -0.02 0.40 16 50 H 0.08 0.43 8.14 -2.39 -0.02 0.41 16 51 H 0.39 2.67 9.08 -74.06 -0.67 2.00 16 52 H 0.11 0.49 8.14 -2.39 -0.02 0.47 16 53 H 0.07 0.85 8.14 -2.38 -0.02 0.83 16 54 H 0.06 2.09 8.10 -2.39 -0.02 2.08 16 55 H 0.01 0.56 6.54 -2.39 -0.02 0.55 16 Total: -1.00 -82.93 417.11 -2.63 -85.56 By element: Atomic # 1 Polarization: 15.40 SS G_CDS: -0.56 Total: 14.84 kcal Atomic # 6 Polarization: -26.46 SS G_CDS: 4.01 Total: -22.46 kcal Atomic # 7 Polarization: -87.54 SS G_CDS: -6.27 Total: -93.81 kcal Atomic # 8 Polarization: -31.27 SS G_CDS: -1.83 Total: -33.10 kcal Atomic # 14 Polarization: 46.94 SS G_CDS: 2.03 Total: 48.97 kcal Total: -82.93 -2.63 -85.56 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000879973774.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.300 kcal (2) G-P(sol) polarization free energy of solvation -82.931 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -146.231 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.631 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.562 kcal (6) G-S(sol) free energy of system = (1) + (5) -148.863 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 10.92 seconds